genome.fa.s4.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  135  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43139794--43139938	50	3.0	48	84	5	184	29	16	27	26	1.97
43141111--43141469	47	7.6	46	74	12	252	23	30	18	27	1.98
43141151--43141464	94	3.4	93	79	10	338	23	29	18	28	1.98
43150564--43150776	47	4.6	47	75	9	170	26	27	17	28	1.98
43150626--43150820	94	2.1	95	82	4	234	23	28	17	30	1.97
43151168--43151228	30	2.0	30	87	0	86	26	27	14	31	1.95
43159575--43159813	50	4.8	50	80	6	254	31	18	25	23	1.98
43159575--43159813	100	2.4	98	82	4	291	31	18	25	23	1.98
43168088--43168112	12	2.1	12	100	0	50	28	8	16	48	1.74
43171818--43171902	43	2.0	43	88	0	125	22	20	28	29	1.98
43175624--43175676	15	3.6	14	87	5	70	11	15	18	54	1.70
43178177--43178235	30	2.0	30	83	6	75	40	5	27	27	1.77
43186626--43186851	40	5.7	40	90	2	348	26	26	22	24	2.00
43194750--43194976	40	5.7	40	91	4	370	25	27	21	24	1.99
43194750--43194976	79	2.9	80	91	2	370	25	27	21	24	1.99
43194750--43194976	119	1.9	119	91	1	375	25	27	21	24	1.99
43202249--43202352	42	2.4	43	85	1	129	18	18	31	31	1.95
43202249--43202363	43	2.7	42	84	1	131	20	16	31	32	1.94
43228951--43228981	16	1.9	16	93	0	53	35	22	0	41	1.54
43228948--43228987	20	2.0	20	85	0	53	37	22	0	40	1.54
43229189--43229427	55	4.5	54	77	8	233	21	23	17	36	1.94
43239866--43239939	32	2.4	31	83	2	85	21	29	31	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43239882--43239941	31	1.9	32	89	3	95	21	33	28	16	1.95
43255710--43255735	12	2.2	12	100	0	52	23	38	23	15	1.92
43263814--43264003	50	3.8	49	78	4	193	31	26	16	26	1.96
43267978--43268098	46	2.6	46	93	0	197	28	28	22	19	1.98
43267970--43268104	46	3.0	45	85	4	155	28	30	21	19	1.97
43270916--43270968	22	2.4	22	87	6	72	43	22	5	28	1.76
43276416--43276802	37	10.6	37	75	7	283	26	19	14	39	1.91
43276400--43276798	73	5.5	72	78	7	315	25	19	15	39	1.91
43276498--43276794	110	2.7	108	82	8	307	25	20	15	38	1.92
43276749--43276828	38	2.1	38	83	0	97	22	26	18	32	1.97
43278688--43278835	74	2.0	75	89	4	228	26	21	28	23	1.99
43279073--43279124	26	2.0	26	96	0	95	30	13	19	36	1.90
43285401--43285439	21	1.9	20	85	15	53	33	17	5	43	1.72
43297593--43297733	48	3.0	46	80	11	160	36	18	21	23	1.95
43297592--43297717	23	5.3	23	75	11	121	36	19	22	22	1.95
43301508--43301546	20	2.0	20	100	0	78	35	23	10	30	1.88
43301523--43301585	27	2.3	28	91	2	101	33	28	7	30	1.86
43301691--43301779	28	3.2	27	85	10	119	20	23	23	32	1.98
43301691--43301779	26	3.2	27	85	7	117	20	23	23	32	1.98
43302714--43302750	15	2.4	15	90	4	56	54	5	5	35	1.47
43302805--43302838	10	3.3	10	84	8	50	29	8	8	52	1.62
43308787--43308831	23	2.0	22	83	8	56	20	15	31	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43309316--43309380	28	2.3	28	91	0	103	35	27	7	29	1.85
43309486--43309575	28	3.2	27	84	10	103	21	23	22	33	1.97
43309496--43309586	27	3.2	28	81	7	78	23	25	18	32	1.97
43309486--43309600	55	2.1	56	80	11	130	20	23	20	35	1.96
43315895--43316023	23	5.6	23	76	8	93	34	16	20	28	1.94
43315883--43316026	46	3.1	46	77	9	148	36	16	19	27	1.93
43315981--43316026	24	1.9	24	86	0	65	39	19	19	21	1.93
43319778--43319955	27	6.6	27	83	3	196	30	27	15	26	1.96
43325763--43325820	30	1.9	30	82	10	73	34	8	22	34	1.85
43327421--43327516	27	3.5	26	80	17	106	31	30	14	23	1.95
43327421--43327597	55	3.2	53	78	14	157	29	28	15	25	1.96
43327447--43327597	27	5.5	27	83	4	160	29	27	15	27	1.96
43335299--43335486	40	4.7	40	86	5	256	26	26	21	26	2.00
43345446--43345543	27	3.5	28	90	2	135	26	13	28	31	1.94
43345474--43345556	27	3.0	27	87	5	96	30	12	25	32	1.92
43345446--43345557	28	4.0	27	83	6	98	28	12	25	33	1.92
43351179--43351353	39	4.5	40	87	7	227	24	27	22	25	2.00
43353852--43353944	42	2.2	42	98	0	177	22	27	27	21	1.99
43356709--43356761	21	2.5	22	78	9	56	35	28	5	30	1.80
43359059--43359108	25	2.0	25	96	0	91	44	16	6	34	1.72
43359240--43359357	19	6.2	19	82	3	132	39	26	16	16	1.90
43361722--43361784	25	2.5	25	76	0	72	30	23	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43371497--43371680	40	4.6	40	85	5	205	22	21	27	27	1.99
43371539--43371680	40	3.6	39	91	1	212	23	22	27	26	2.00
43371493--43371703	40	5.3	40	77	11	193	24	21	27	27	1.99
43371493--43371703	79	2.7	79	78	8	248	24	21	27	27	1.99
43379554--43379773	40	5.6	39	89	6	281	23	22	28	25	2.00
43379550--43379805	39	6.6	40	85	7	174	25	22	27	25	2.00
43385993--43386024	8	4.0	8	91	0	55	46	25	25	3	1.67
43386270--43386334	28	2.3	28	94	0	112	33	27	7	30	1.85
43386460--43386554	27	3.5	28	82	5	106	17	23	21	37	1.94
43386440--43386554	55	2.1	56	85	8	155	19	23	21	35	1.96
43386993--43387031	19	2.1	19	85	0	51	15	5	7	71	1.26
43394203--43394292	28	3.2	27	85	7	119	20	24	23	32	1.98
43394215--43394303	27	3.2	28	82	4	81	23	26	17	31	1.97
43394755--43394793	19	2.1	19	85	0	51	15	5	7	71	1.26
43402585--43402612	14	2.0	14	100	0	56	50	35	0	14	1.43
43407589--43407764	46	3.8	46	78	12	207	20	20	29	29	1.98
43407586--43407757	93	1.8	93	94	0	308	20	20	29	28	1.98
43415007--43415182	46	3.8	46	79	12	216	20	21	29	28	1.98
43415004--43415175	93	1.8	93	96	0	317	20	21	29	27	1.98
43423372--43423592	39	5.7	40	80	11	228	24	23	27	24	2.00
43423424--43423592	81	2.2	78	84	8	211	24	22	27	25	2.00
43433393--43433568	46	3.8	46	79	12	216	20	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43433390--43433561	93	1.8	93	96	0	317	20	21	29	27	1.98
43435426--43435468	20	2.2	20	83	8	52	46	2	16	34	1.60
43445686--43445755	16	4.4	16	79	0	68	52	24	17	5	1.65
43445970--43446082	29	3.9	29	80	5	113	25	12	30	31	1.92
43450555--43450650	29	3.3	29	82	1	122	26	12	31	30	1.93
43453740--43453825	23	3.7	22	77	10	84	22	23	17	37	1.94
43457352--43457447	45	2.1	45	88	1	147	21	17	16	43	1.87
43458149--43458256	43	2.5	42	76	8	110	32	13	23	30	1.93
43463829--43463900	27	2.7	27	84	0	90	36	19	19	25	1.95
43464036--43464139	27	3.9	27	75	8	79	23	22	19	35	1.96
43466557--43466593	18	2.1	18	100	0	74	37	0	10	51	1.37
43466993--43467061	34	2.0	34	94	0	120	30	23	20	26	1.98
43475204--43475426	119	1.9	120	84	6	301	25	27	22	24	2.00
43475202--43475426	40	5.7	40	85	6	287	25	28	22	24	2.00
43488516--43488691	27	6.5	27	84	3	201	26	15	27	30	1.96
43488516--43488670	82	1.9	81	88	4	231	27	15	27	29	1.96
43488511--43488691	82	2.2	81	82	2	220	27	15	27	29	1.96
43491279--43491339	30	2.0	30	83	0	77	42	4	22	29	1.75
43503783--43503834	21	2.5	21	83	0	68	34	38	17	9	1.82
43504275--43504365	45	2.0	45	87	4	130	37	14	8	39	1.77
43504363--43504434	36	2.0	36	86	0	99	31	8	8	51	1.62
43508040--43508082	22	2.0	22	86	4	61	34	0	11	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43510748--43510843	40	2.5	38	77	9	104	39	37	8	14	1.76
43515728--43516666	468	2.0	468	94	0	1637	28	24	14	32	1.94
43520882--43521102	40	5.6	40	87	4	297	26	28	22	23	1.99
43521099--43521144	21	2.1	23	84	15	62	43	19	8	28	1.80
43532606--43532753	56	2.7	55	82	4	181	29	33	18	18	1.95
43540227--43540318	40	2.4	39	74	5	96	40	36	9	13	1.77
43543006--43543047	20	2.0	22	86	9	61	45	0	0	54	0.99
43543035--43543103	19	3.9	18	75	15	56	47	1	0	50	1.09
43543540--43543587	14	3.5	13	83	11	60	37	16	8	37	1.79
43549726--43549802	29	2.6	28	86	10	102	25	15	29	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253