genome.fa.s4.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  125  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39662074--39662298	40	5.7	40	87	5	278	26	27	21	24	1.99
39662074--39662298	119	1.9	120	83	6	296	26	27	21	24	1.99
39668869--39669053	79	2.3	82	84	7	238	25	27	22	24	2.00
39668850--39669053	40	5.1	40	82	8	238	25	27	22	25	2.00
39676795--39676979	79	2.3	82	84	7	238	25	27	22	24	2.00
39676776--39676979	40	5.1	40	82	8	238	25	27	22	25	2.00
39682446--39682945	132	3.8	132	90	1	745	25	15	25	33	1.95
39683249--39683283	15	2.4	15	90	4	54	8	0	34	57	1.29
39683240--39683317	37	2.1	37	83	4	95	15	0	30	53	1.42
39683268--39683333	22	3.0	22	82	4	71	13	0	34	51	1.41
39683251--39683332	37	2.2	37	82	4	94	13	0	32	53	1.40
39683424--39683465	22	1.9	22	85	9	59	14	0	35	50	1.43
39683446--39683489	15	2.9	15	82	0	61	25	0	25	50	1.50
39683950--39684122	47	3.7	47	95	0	301	35	16	15	32	1.91
39686786--39686824	6	6.2	6	85	5	51	33	0	2	64	1.08
39686936--39687366	38	11.7	37	70	10	132	25	21	14	38	1.91
39686975--39687366	37	10.7	35	77	10	304	25	21	15	36	1.93
39686975--39687366	73	5.3	73	78	6	407	25	21	15	36	1.93
39686965--39687371	147	2.8	145	81	5	444	26	21	14	37	1.92
39686935--39687366	220	2.0	222	82	6	538	25	21	14	38	1.92
39687645--39687677	16	2.0	17	88	5	50	21	6	3	69	1.24
39692690--39692728	17	2.3	17	86	0	51	23	0	5	71	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39697922--39698041	56	2.1	56	98	0	231	45	9	23	22	1.81
39699989--39700110	22	5.3	22	62	21	61	33	11	29	25	1.91
39699494--39700137	47	13.6	47	93	2	940	33	9	29	28	1.88
39713360--39713575	40	5.4	40	88	3	296	25	23	26	24	2.00
39721215--39721435	79	2.8	80	84	4	279	26	21	26	25	2.00
39721219--39721435	119	1.8	119	83	5	287	25	22	26	25	2.00
39721219--39721435	40	5.5	40	85	3	271	25	22	26	25	2.00
39727733--39727771	20	1.9	20	84	5	51	10	25	15	48	1.76
39730704--39730887	40	4.6	39	79	9	185	25	22	27	25	2.00
39730756--39730910	79	2.0	79	83	7	199	26	21	27	25	1.99
39733971--39734088	62	1.9	62	87	1	175	29	20	22	27	1.98
39736975--39737035	20	3.0	20	80	0	68	32	34	18	14	1.91
39741923--39742086	43	3.8	43	73	9	118	33	23	18	24	1.97
39762474--39762565	45	2.0	45	89	0	139	52	7	6	33	1.56
39770535--39770728	47	4.1	47	90	0	289	32	10	29	26	1.90
39770564--39770635	22	3.1	22	64	24	58	33	13	29	23	1.93
39770609--39770684	23	3.2	25	62	24	63	28	13	34	23	1.92
39770698--39770879	48	3.8	48	90	4	294	35	7	25	31	1.84
39770699--39770882	98	1.9	96	93	4	316	35	7	25	30	1.84
39771028--39771099	37	1.9	37	91	0	117	23	19	29	27	1.98
39775124--39775337	48	4.5	47	75	11	193	30	18	28	22	1.98
39782593--39782656	25	2.4	27	79	10	69	31	1	23	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39782735--39782931	48	4.1	48	80	8	213	28	19	27	23	1.98
39782732--39782908	96	1.8	96	85	4	250	28	19	28	24	1.98
39783420--39783511	48	1.9	48	82	8	116	27	31	15	26	1.95
39783319--39783687	196	1.9	196	89	2	571	31	23	18	27	1.97
39785684--39785786	39	2.6	40	93	1	172	28	28	18	25	1.98
39785656--39785840	40	4.7	40	80	7	198	27	27	21	24	1.99
39796890--39797070	39	4.7	40	82	9	198	25	27	21	25	1.99
39797399--39797462	32	2.0	32	100	0	128	12	28	28	31	1.93
39798710--39798853	40	3.6	40	84	6	184	25	24	26	23	2.00
39806724--39806868	40	3.6	40	85	4	193	25	24	26	23	2.00
39808989--39809038	3	17.0	3	95	4	93	66	0	0	34	0.92
39810398--39810477	37	2.2	37	88	0	115	23	31	18	26	1.98
39810595--39811242	47	13.4	47	90	5	963	29	28	8	33	1.87
39810595--39811240	98	6.7	97	89	5	954	29	28	8	33	1.87
39810610--39811242	145	4.4	145	94	2	1103	29	28	8	32	1.87
39815321--39815588	97	2.8	95	81	5	304	27	22	17	32	1.97
39815359--39815540	51	3.7	50	74	12	162	28	22	18	30	1.97
39815321--39815751	44	9.3	45	70	11	192	28	24	16	30	1.97
39815502--39815753	133	1.9	133	84	1	335	30	25	15	28	1.96
39815871--39816097	111	2.0	111	98	0	436	28	14	16	40	1.88
39816384--39816475	45	2.0	44	82	12	107	50	10	14	25	1.75
39826798--39826839	19	2.2	19	100	0	84	33	28	19	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39828728--39828759	14	2.4	13	94	5	55	84	0	9	6	0.78
39828782--39828810	14	2.0	15	93	6	51	6	6	10	75	1.17
39849000--39849029	16	1.9	15	93	6	51	33	23	0	43	1.54
39849220--39849467	50	5.0	50	81	2	273	29	28	17	25	1.98
39853946--39854713	47	16.1	47	92	2	1221	32	9	29	28	1.89
39853946--39854713	96	8.0	96	93	2	1278	32	9	29	28	1.89
39853946--39854713	143	5.4	143	93	2	1260	32	9	29	28	1.89
39854832--39854908	35	2.1	37	88	4	113	24	19	29	25	1.98
39863029--39863067	21	1.9	20	94	5	69	33	10	25	30	1.89
39865727--39865755	14	2.1	14	100	0	58	34	13	6	44	1.71
39865833--39865871	21	1.9	20	89	5	60	35	10	23	30	1.88
39865985--39866023	20	2.0	20	94	0	69	23	0	7	69	1.14
39866035--39866101	14	4.6	15	78	12	68	53	0	0	46	1.00
39866062--39866105	11	4.2	11	80	11	56	59	0	0	40	0.98
39866062--39866105	20	2.3	19	85	14	63	59	0	0	40	0.98
39869913--39870044	12	11.2	12	71	18	59	30	3	1	64	1.20
39869913--39870075	15	10.9	15	73	21	64	31	3	2	63	1.23
39870011--39870038	11	2.5	11	100	0	56	28	0	7	64	1.20
39870003--39870070	26	2.5	27	80	15	70	29	1	5	63	1.27
39870029--39870136	31	3.4	32	78	11	114	45	0	4	50	1.22
39871083--39871120	17	2.2	17	86	9	51	23	2	5	68	1.23
39871175--39871234	31	1.9	31	100	0	120	43	0	8	48	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39871281--39871312	15	2.0	17	88	11	50	31	3	6	59	1.38
39871410--39871466	27	2.1	28	90	3	89	43	7	7	42	1.58
39871861--39871898	17	2.2	17	86	9	51	23	2	5	68	1.23
39880604--39880940	168	2.0	168	94	1	586	34	13	13	38	1.84
39882542--39882623	39	2.1	39	93	0	137	29	7	21	41	1.80
39884269--39884441	93	1.9	93	93	0	301	27	30	21	20	1.98
39884262--39884437	46	3.8	46	78	12	198	28	29	21	20	1.98
39894069--39894130	30	2.1	30	100	0	124	46	12	6	33	1.68
39897692--39897835	49	2.9	48	81	6	189	29	29	15	25	1.96
39897698--39897839	50	2.8	51	84	3	191	30	30	14	24	1.95
39907933--39908002	31	2.3	31	85	5	88	32	18	7	41	1.78
39908548--39908614	31	2.2	31	86	0	89	52	7	7	32	1.58
39911254--39911305	16	3.3	17	82	12	58	40	0	0	59	0.97
39912269--39912320	24	2.2	24	89	0	77	55	9	1	32	1.43
39914238--39914289	24	2.2	24	89	0	77	55	9	1	32	1.43
39915234--39915277	18	2.4	19	84	7	63	65	0	0	34	0.93
39917098--39917173	29	2.7	27	82	8	73	30	3	3	61	1.32
39917116--39917173	27	2.1	27	87	6	80	32	5	3	58	1.37
39917111--39917174	29	2.2	31	78	16	82	31	4	3	60	1.32
39917802--39918037	130	1.8	128	90	2	384	26	12	22	38	1.90
39925797--39925987	103	1.8	105	94	4	343	18	19	30	30	1.96
39926016--39926067	26	2.0	26	92	0	86	15	21	34	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39925907--39926055	71	2.1	70	90	4	230	22	16	29	30	1.96
39933217--39933539	101	3.2	104	92	4	541	18	19	31	30	1.96
39933458--39933609	71	2.1	72	92	1	252	23	17	29	30	1.97
39938891--39939122	40	5.8	40	83	3	279	26	28	21	24	1.99
39938871--39939121	80	3.2	80	87	3	337	27	27	20	23	1.99
39938898--39939118	120	1.8	120	93	0	379	25	28	21	24	1.99
39943253--39943547	132	2.2	132	90	0	464	29	18	21	29	1.97
39943385--39943790	177	2.3	176	87	0	578	29	19	21	29	1.98
39943761--39943846	44	2.0	44	83	4	111	30	20	20	27	1.98
39943385--39943846	177	2.6	177	83	3	493	29	19	21	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253