genome.fa.s4.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  162  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52421642--52421866	79	2.8	80	83	3	285	24	22	27	26	2.00
52421639--52421889	40	6.3	40	84	5	246	24	22	26	26	2.00
52421683--52421889	79	2.6	78	82	5	254	24	22	26	26	2.00
52423652--52423701	20	2.5	20	86	3	64	50	2	12	36	1.51
52426442--52426588	40	3.7	40	89	5	226	25	27	22	24	2.00
52429702--52429858	43	3.7	42	71	10	126	30	25	16	27	1.97
52433178--52433204	14	1.9	14	100	0	54	44	22	3	29	1.70
52435450--52435511	30	2.1	30	93	0	106	40	16	16	27	1.89
52436845--52436984	37	3.8	37	94	0	235	25	30	20	25	1.99
52437125--52437612	48	10.2	48	97	0	850	29	28	7	34	1.85
52442775--52442856	23	3.6	23	81	1	103	32	19	21	25	1.97
52447520--52447562	17	2.5	17	92	0	68	27	27	30	13	1.95
52454265--52454337	19	3.7	20	75	14	71	63	5	2	28	1.31
52454257--52454347	20	4.8	18	71	21	53	61	4	4	29	1.35
52454867--52454941	9	8.4	9	68	8	55	33	1	1	64	1.11
52458250--52458289	19	2.0	20	85	4	55	32	2	0	65	1.06
52459749--52459874	43	3.0	43	88	3	175	34	27	15	23	1.94
52461899--52461986	30	2.9	30	73	13	81	39	5	3	51	1.43
52464205--52464308	41	2.6	41	85	1	147	25	22	14	38	1.91
52466116--52466157	21	2.0	21	100	0	84	28	14	14	42	1.84
52466173--52466567	126	3.1	125	86	2	547	29	17	16	37	1.91
52466680--52466710	6	5.2	6	92	0	53	32	48	0	19	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52474564--52474708	76	1.9	73	90	4	227	22	24	25	28	1.99
52482414--52482442	12	2.3	13	94	5	51	72	0	3	24	1.00
52483378--52483472	25	3.8	25	91	0	145	27	22	23	27	1.99
52483353--52483472	50	2.4	49	80	6	143	26	22	22	28	1.99
52485766--52485790	3	8.3	3	100	0	50	64	0	0	36	0.94
52490503--52490541	21	1.9	20	84	5	51	33	2	20	43	1.65
52502264--52502487	40	5.7	40	83	7	237	25	22	27	25	2.00
52502264--52502487	79	2.8	80	81	6	258	25	22	27	25	2.00
52502317--52502494	39	4.5	38	86	3	185	25	21	27	24	2.00
52502317--52502520	79	2.6	79	82	5	200	26	21	26	25	1.99
52510355--52510483	39	3.2	41	84	7	176	24	20	27	27	1.99
52510363--52510517	79	2.0	78	80	8	172	25	20	27	25	1.99
52511834--52511978	40	3.7	40	83	5	172	26	20	28	24	1.99
52514187--52514257	24	3.0	24	89	0	106	36	2	36	23	1.70
52533709--52534005	40	7.4	40	81	3	278	32	15	29	22	1.95
52533685--52533984	80	3.8	80	79	3	318	33	15	28	23	1.94
52533685--52534001	119	2.7	119	84	3	388	33	14	29	23	1.94
52537685--52537709	11	2.3	11	100	0	50	20	0	24	56	1.43
52540515--52540547	14	2.4	14	100	0	66	24	24	21	30	1.99
52542455--52542518	15	4.4	15	75	13	62	64	14	12	9	1.50
52545182--52545359	49	3.6	49	89	0	248	29	29	16	24	1.97
52558561--52558745	40	4.6	40	89	3	273	23	26	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52559933--52560007	37	2.0	38	97	2	143	30	24	13	32	1.93
52566634--52566783	39	3.8	40	87	2	115	25	28	23	22	1.99
52566657--52566839	79	2.3	80	86	5	255	24	26	24	25	2.00
52566657--52566839	40	4.6	40	88	4	255	24	26	24	25	2.00
52568027--52568102	38	2.0	38	100	0	152	31	23	13	31	1.93
52568656--52568685	8	3.8	8	90	0	51	50	23	23	3	1.64
52569103--52569214	27	4.2	26	83	7	134	16	24	22	36	1.94
52569103--52569214	54	2.1	54	88	3	163	16	24	22	36	1.94
52570216--52570244	13	2.2	13	100	0	58	72	0	13	13	1.13
52579624--52579725	37	2.8	37	95	0	177	26	30	18	24	1.98
52579844--52580533	47	14.6	47	93	2	1157	29	29	8	33	1.86
52579844--52580533	96	7.3	94	94	1	1157	29	29	8	33	1.86
52579844--52580533	143	4.9	141	94	1	1157	29	29	8	33	1.86
52589295--52589518	40	5.6	39	87	6	258	23	22	28	26	1.99
52589294--52589518	79	2.8	80	85	3	294	23	22	28	26	1.99
52589337--52589541	79	2.6	79	85	3	243	24	21	27	26	2.00
52592779--52592882	27	3.9	26	81	9	111	19	22	21	37	1.94
52592782--52592856	26	2.8	26	86	9	91	18	22	21	37	1.94
52592782--52592884	53	1.9	53	84	3	136	19	22	19	38	1.93
52606928--52606981	25	2.2	25	100	0	108	44	7	24	24	1.79
52608736--52609133	43	9.5	43	79	8	365	31	23	19	25	1.98
52608736--52609128	86	4.7	86	81	7	434	31	23	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52608937--52609083	78	1.9	78	95	0	267	31	20	19	29	1.97
52609005--52609128	44	2.9	43	82	7	169	32	22	19	25	1.97
52609433--52609473	21	2.0	21	100	0	82	0	53	19	26	1.45
52610033--52610070	19	2.1	18	85	9	51	52	0	7	39	1.31
52617258--52617509	133	1.9	133	97	0	477	51	18	9	20	1.74
52620111--52620142	15	2.1	15	94	0	55	31	9	0	59	1.29
52620997--52621036	14	2.9	14	88	0	53	47	22	0	30	1.52
52622871--52622943	28	2.6	29	89	6	105	26	16	31	26	1.96
52628557--52628630	29	2.6	29	89	4	105	25	16	32	25	1.96
52630236--52630318	40	2.0	41	86	2	114	21	22	22	32	1.98
52630756--52630794	19	2.1	19	85	0	51	71	7	5	15	1.26
52631232--52631346	55	2.1	56	82	8	137	34	22	24	18	1.96
52631257--52631346	27	3.2	27	81	7	101	32	24	24	18	1.97
52631452--52631513	28	2.3	28	89	8	94	29	8	29	33	1.86
52631467--52631521	28	2.0	28	89	3	85	30	9	23	36	1.86
52637685--52638262	48	12.0	48	91	1	917	37	6	25	31	1.82
52638392--52638542	37	4.1	37	93	1	250	25	17	31	25	1.97
52642956--52642994	19	2.1	19	85	0	51	71	7	5	15	1.26
52643458--52643544	27	3.1	27	75	8	86	34	24	21	19	1.96
52643653--52643716	28	2.3	28	91	5	103	29	7	29	32	1.86
52645416--52645628	41	5.2	40	82	3	255	20	22	23	34	1.96
52645416--52645634	82	2.7	80	85	2	294	21	21	23	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52650298--52650461	40	4.1	40	92	1	249	22	24	28	24	1.99
52657982--52658019	7	5.4	7	93	0	67	42	42	0	15	1.47
52662287--52662380	40	2.3	40	83	7	111	26	17	29	26	1.97
52671763--52671822	15	4.1	14	76	6	57	11	13	16	58	1.63
52673967--52674139	49	3.5	49	88	2	249	24	15	28	31	1.96
52673960--52674152	49	3.9	49	86	2	244	24	16	28	30	1.97
52676823--52676900	41	1.9	41	97	0	147	44	23	6	25	1.76
52685288--52685390	38	2.7	38	90	0	152	22	24	25	28	1.99
52685388--52685499	43	2.6	43	95	2	199	10	25	33	31	1.90
52690802--52690909	38	2.8	38	87	0	144	22	24	25	27	2.00
52690847--52690977	43	3.2	41	81	5	133	14	23	29	32	1.94
52690954--52690986	16	2.1	16	100	0	66	12	33	30	24	1.91
52702425--52702600	46	3.8	45	80	10	203	21	21	28	28	1.98
52702422--52702592	93	1.8	93	92	2	290	21	21	28	28	1.99
52715589--52715864	39	7.1	39	89	0	408	22	30	23	23	1.99
52715584--52715864	117	2.4	117	93	0	472	22	29	23	24	1.99
52731556--52731861	47	6.5	47	94	0	513	32	8	29	29	1.86
52735025--52735104	25	3.2	25	79	10	92	26	25	20	28	1.99
52735039--52735116	25	3.1	25	76	10	79	29	24	15	30	1.95
52738678--52738739	31	2.1	30	82	17	76	45	8	17	29	1.77
52754533--52754562	15	2.0	15	100	0	60	20	20	13	46	1.83
52756781--52756849	33	2.1	33	100	0	138	42	34	5	17	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52764467--52764698	40	5.8	41	85	3	303	24	21	28	25	1.99
52764467--52764718	120	2.1	119	85	2	344	24	20	28	26	1.99
52764467--52764698	80	2.9	80	90	1	349	24	21	28	25	1.99
52768698--52768963	47	5.7	47	73	15	176	22	28	19	28	1.98
52768698--52768962	94	2.8	93	77	11	274	22	29	19	28	1.98
52772850--52772933	28	3.0	28	91	0	132	36	14	16	32	1.89
52774692--52774989	40	7.5	40	79	0	265	18	26	17	37	1.92
52774692--52774979	80	3.6	80	82	1	301	18	26	17	38	1.92
52776433--52776474	20	2.1	20	95	0	75	30	7	14	47	1.71
52782063--52782326	134	2.0	133	86	3	370	29	15	14	41	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253