genome.fa.s4.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  94  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29354830--29355069	51	4.8	50	89	3	313	27	19	25	28	1.98
29354828--29355069	101	2.4	100	84	3	317	27	19	24	28	1.99
29356960--29357009	26	1.9	26	87	0	73	26	14	20	40	1.90
29356960--29357016	26	2.2	26	83	3	69	26	17	19	36	1.94
29359282--29359325	19	2.4	18	85	7	54	40	9	0	50	1.34
29361956--29362338	48	8.0	48	86	2	450	29	28	15	26	1.96
29368601--29368640	21	1.9	21	84	0	53	37	5	22	35	1.76
29372484--29372543	27	2.3	26	85	2	75	35	20	23	21	1.96
29380750--29380934	40	4.6	39	83	6	212	24	22	27	25	2.00
29380750--29380934	79	2.3	81	83	7	227	24	22	27	25	2.00
29380803--29380967	79	2.1	79	83	6	201	26	20	27	26	1.99
29385052--29385225	26	6.6	27	79	9	151	29	28	14	27	1.96
29385107--29385224	25	4.5	25	80	7	110	28	28	16	26	1.97
29409138--29409315	27	6.6	27	83	3	196	29	28	14	27	1.95
29409159--29409314	82	1.9	81	86	3	224	29	28	14	27	1.95
29421571--29421678	28	3.9	28	91	2	166	17	24	22	36	1.95
29421571--29421678	55	2.0	55	90	3	173	17	24	22	36	1.95
29428661--29428745	40	2.2	39	82	2	98	28	30	22	18	1.97
29428816--29428924	47	2.3	46	84	7	141	27	28	10	33	1.89
29431476--29431516	20	2.0	20	85	9	55	46	17	7	29	1.74
29441124--29441195	19	3.8	18	87	7	83	36	15	8	40	1.77
29441144--29441199	17	3.2	17	92	5	85	33	12	10	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29441556--29441667	45	2.5	45	89	1	172	23	31	13	32	1.93
29441741--29442454	205	3.5	205	92	0	1187	28	21	19	30	1.98
29442441--29442533	44	2.1	44	89	0	141	25	25	16	32	1.96
29442508--29442695	43	4.3	42	75	11	157	28	25	18	28	1.98
29442528--29442694	43	3.8	43	77	7	176	26	25	17	29	1.98
29443553--29443627	7	10.7	7	73	21	68	4	14	0	81	0.83
29443554--29443616	11	5.2	12	77	19	53	4	12	0	82	0.82
29443553--29443627	21	3.6	20	79	13	80	4	14	0	81	0.83
29449142--29449202	19	3.0	21	85	9	63	37	18	9	34	1.83
29449154--29449251	19	5.2	19	91	7	155	35	15	10	38	1.81
29449176--29449232	17	3.5	15	88	11	53	35	15	10	38	1.82
29449154--29449251	36	2.6	37	88	9	144	35	15	10	38	1.81
29455267--29455427	40	4.0	40	89	1	241	22	20	26	29	1.99
29463354--29463519	40	4.2	40	92	0	262	23	20	27	28	1.99
29465331--29465437	51	2.1	51	89	0	160	30	22	32	14	1.93
29469648--29469777	49	2.7	47	83	3	170	30	20	27	22	1.98
29473097--29473198	51	2.0	51	100	0	204	33	13	17	35	1.89
29490674--29490808	70	1.9	70	87	0	198	33	12	18	35	1.89
29500529--29500644	49	2.4	47	85	4	142	30	17	28	24	1.97
29507533--29507709	48	3.7	48	91	0	282	25	27	19	26	1.99
29513421--29513491	35	2.0	35	86	0	97	42	21	7	29	1.79
29517087--29517118	10	3.2	10	95	0	55	0	15	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29517087--29517117	14	2.2	14	94	0	53	0	16	0	83	0.64
29519525--29519738	114	1.9	114	81	2	261	37	16	14	31	1.89
29523542--29523763	40	5.6	40	88	1	304	23	20	26	29	1.99
29528223--29528274	27	2.0	26	84	3	68	34	21	26	17	1.95
29528926--29529260	27	12.4	27	87	0	472	25	20	19	35	1.96
29533696--29533748	27	2.0	27	92	0	88	26	5	16	50	1.67
29536605--29536643	18	2.2	18	86	9	53	61	0	7	30	1.24
29540919--29541011	47	2.0	47	97	0	177	29	13	19	37	1.90
29557835--29558006	46	3.8	45	80	11	215	21	21	27	29	1.99
29557832--29558001	92	1.8	92	96	0	313	21	21	28	28	1.99
29574898--29574989	39	2.4	39	90	1	141	22	28	22	26	1.99
29575634--29575674	21	2.0	21	95	0	73	46	12	2	39	1.54
29577636--29577674	18	2.2	18	86	9	53	61	0	7	30	1.24
29582134--29582229	28	3.4	28	88	1	120	27	13	27	32	1.94
29583783--29583872	18	5.1	18	79	5	76	46	15	17	20	1.84
29584174--29584277	27	3.9	27	89	0	163	39	20	14	25	1.90
29584146--29584277	54	2.4	54	85	0	174	38	19	15	26	1.91
29592477--29592582	43	2.5	43	83	4	126	28	18	21	31	1.97
29594478--29594626	29	5.3	30	74	8	109	39	20	14	26	1.90
29596118--29596309	40	4.8	40	87	2	287	27	27	21	23	1.99
29601463--29601508	24	1.9	24	82	8	58	41	4	30	23	1.74
29602853--29602977	27	4.6	27	76	5	110	40	20	9	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29605565--29605673	27	4.1	26	81	5	119	40	21	22	16	1.91
29605567--29605672	54	2.0	53	84	1	140	40	21	20	16	1.91
29607094--29607177	24	3.5	24	93	0	132	27	38	1	33	1.65
29613416--29613530	27	4.3	27	85	5	144	39	20	23	16	1.92
29614937--29615013	24	3.2	24	84	0	109	23	38	2	35	1.69
29617786--29617825	21	2.0	20	90	5	62	35	0	22	42	1.54
29617791--29617833	21	2.1	21	83	12	54	32	2	20	44	1.65
29618323--29618432	42	2.6	42	82	1	141	20	15	25	39	1.91
29624732--29624890	45	3.7	44	70	16	127	28	28	18	23	1.98
29630102--29630214	43	2.7	42	82	5	138	32	25	17	23	1.97
29632231--29632295	34	1.9	34	87	6	96	30	23	20	26	1.98
29636547--29636801	55	4.8	54	78	10	253	36	17	24	21	1.94
29636554--29636754	108	1.8	110	87	4	300	34	17	24	22	1.96
29636993--29637023	16	1.9	16	93	0	53	41	0	22	35	1.54
29645717--29645860	27	5.4	27	83	0	173	36	15	20	26	1.93
29653287--29653485	27	7.4	27	82	2	238	35	18	21	24	1.95
29654138--29654188	27	1.9	26	84	4	66	17	27	19	35	1.94
29659555--29660060	49	10.6	49	94	2	847	29	29	8	32	1.86
29659555--29660060	145	3.5	144	94	2	840	29	29	8	32	1.86
29663394--29663660	40	6.7	40	89	2	369	24	27	23	25	2.00
29665883--29666242	49	7.6	49	92	3	553	29	30	8	32	1.87
29674223--29674322	50	2.0	50	96	0	182	33	19	21	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29675475--29675853	48	7.9	48	78	8	387	27	18	28	25	1.98
29675488--29675853	144	2.5	144	90	0	536	27	18	28	25	1.98
29675475--29675896	96	4.4	91	76	13	339	28	18	27	25	1.98
29675475--29675896	48	8.8	47	74	11	293	28	18	27	25	1.98
29675488--29675896	144	2.8	140	80	11	457	28	18	27	25	1.98
29678646--29678819	46	3.7	46	83	7	194	25	20	31	22	1.98
29681247--29681417	45	3.7	46	79	14	201	28	28	21	21	1.98
29681252--29681420	92	1.8	92	93	2	295	27	29	21	21	1.98
29681839--29681898	30	2.0	30	90	0	93	30	25	8	36	1.85
29687676--29687846	93	1.8	93	89	2	272	28	29	21	21	1.98
29687673--29687843	46	3.7	45	75	16	163	29	28	21	21	1.98
29688266--29688325	30	2.0	30	93	0	102	28	25	8	38	1.84
29694871--29694929	30	2.0	30	86	0	82	32	15	25	27	1.95
29695271--29695436	46	3.6	44	76	11	147	26	19	29	24	1.98
29697217--29697295	34	2.3	35	82	6	90	49	15	5	30	1.66
29703240--29703295	19	3.1	19	72	15	64	32	7	17	42	1.77
29703239--29703304	35	1.9	35	87	6	100	31	6	15	46	1.70
29704057--29704263	40	5.2	40	97	0	378	22	22	25	28	1.99
29707644--29707676	16	2.0	17	88	5	50	30	3	9	57	1.45
29707788--29707885	44	2.3	43	83	5	126	28	18	25	27	1.98
29707788--29707896	44	2.5	44	82	4	123	28	20	25	25	1.99
29715718--29715901	40	4.6	40	81	10	216	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29715718--29715901	79	2.3	81	84	7	234	25	27	22	24	2.00
29718125--29718298	45	3.9	45	82	3	176	26	21	25	26	1.99
29730511--29730608	27	3.5	28	88	5	128	25	13	28	32	1.93
29730539--29730623	27	3.0	27	87	5	98	30	11	24	32	1.91
29737043--29737160	45	2.7	45	81	7	136	26	22	26	25	2.00
29738482--29738689	45	4.6	45	86	0	254	24	13	26	34	1.93
29739400--29739439	20	2.0	20	95	0	71	35	2	15	47	1.58
29750832--29750901	28	2.6	27	86	2	86	28	20	28	22	1.98
29750777--29750928	55	2.8	53	81	4	178	28	16	27	26	1.97
29750778--29750933	27	5.7	27	78	6	145	28	16	28	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253