genome.fa.s4.2.7.7.80.10.50.1000.232.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  232  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75648512--75648582	9	8.3	9	79	13	62	80	2	16	0	0.83
75649450--75649997	206	2.7	205	88	1	799	31	17	21	29	1.96
75655769--75655813	23	2.0	23	82	8	56	15	4	2	77	1.02
75662535--75662582	20	2.5	19	83	16	71	25	4	4	66	1.27
75664261--75664339	6	13.3	6	88	6	99	15	5	1	78	0.99
75670500--75670581	10	8.3	10	77	12	53	59	0	3	36	1.15
75670817--75670903	19	4.6	19	69	19	58	41	2	2	54	1.26
75671829--75672146	128	2.5	128	84	1	415	35	18	16	28	1.93
75677309--75677357	25	1.9	25	84	12	64	30	4	12	53	1.57
75678465--75678509	23	2.0	23	90	0	72	51	0	2	46	1.13
75678463--75678572	36	3.2	32	73	20	89	47	2	1	48	1.27
75678467--75678516	23	2.2	23	81	0	55	54	4	2	40	1.31
75678774--75678835	29	2.1	28	85	11	81	30	0	12	56	1.37
75678772--75678835	31	2.1	29	88	5	92	31	0	12	56	1.37
75680099--75680136	18	2.1	18	95	0	67	42	47	2	7	1.46
75680113--75680137	13	1.9	13	100	0	50	40	48	0	12	1.40
75680162--75680194	6	5.5	6	100	0	66	84	0	0	15	0.61
75688031--75688208	73	2.5	72	90	3	277	46	9	5	38	1.60
75689197--75689247	26	2.0	26	88	7	77	25	13	9	50	1.72
75691488--75691520	13	2.6	13	90	4	50	48	12	0	39	1.40
75694416--75694480	6	10.8	6	89	0	103	81	1	3	13	0.88
75696637--75696671	15	2.3	15	100	0	70	5	34	31	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75698284--75698347	30	2.2	29	81	10	76	29	28	6	35	1.82
75698291--75698347	30	1.9	30	85	3	80	29	24	7	38	1.82
75701559--75701591	13	2.6	13	90	4	50	48	12	0	39	1.40
75707073--75707129	23	2.5	23	83	8	80	14	7	5	73	1.21
75709283--75709499	39	5.5	39	84	1	263	27	17	26	28	1.98
75709283--75709499	78	2.8	78	89	0	308	27	17	26	28	1.98
75717037--75717253	39	5.5	39	82	1	227	29	17	24	29	1.97
75717037--75717253	78	2.8	78	82	0	254	29	17	24	29	1.97
75719032--75719080	20	2.5	20	96	0	89	34	32	12	20	1.90
75725233--75725313	27	3.1	26	80	8	85	43	9	16	30	1.80
75727755--75727798	23	1.9	23	85	0	61	47	4	6	40	1.50
75730049--75730126	17	4.4	17	70	20	70	43	1	3	51	1.28
75730105--75730219	62	1.9	62	87	5	173	41	2	5	50	1.38
75730445--75730478	15	2.2	15	89	5	50	0	29	0	70	0.87
75731294--75731333	21	1.9	21	85	10	55	77	0	20	2	0.88
75736705--75736937	73	3.2	73	88	0	331	60	3	8	27	1.44
75738137--75738178	7	6.4	7	86	10	54	23	0	2	73	0.94
75738134--75738189	21	2.7	21	81	15	71	23	0	3	73	0.99
75740709--75740764	15	3.8	15	81	13	71	28	17	1	51	1.56
75741506--75741540	17	2.1	17	100	0	70	34	20	0	45	1.51
75741512--75741551	17	2.4	17	87	4	55	45	12	2	40	1.56
75745270--75745310	22	1.9	21	85	5	55	65	0	4	29	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75750426--75750466	12	3.3	13	83	6	50	58	7	14	19	1.59
75753828--75753915	37	2.4	37	80	0	104	25	9	23	42	1.83
75758435--75758469	15	2.3	15	90	9	54	51	22	0	25	1.48
75759115--75759315	41	4.9	41	81	4	172	34	27	17	19	1.95
75759433--75759613	64	2.9	63	89	8	262	41	17	8	32	1.79
75764880--75764914	15	2.3	15	90	9	54	51	22	0	25	1.48
75765559--75765759	41	4.9	41	81	4	172	34	27	17	19	1.95
75765877--75766057	64	2.9	63	89	8	262	41	17	8	32	1.79
75775123--75775629	254	2.0	254	92	0	852	40	16	18	25	1.90
75777220--75779027	614	2.9	614	83	5	2282	35	15	15	33	1.90
75781805--75781943	47	3.0	47	91	0	215	33	11	28	25	1.91
75781909--75782246	48	7.0	48	96	1	599	34	9	28	28	1.88
75782393--75782501	37	2.9	37	95	0	191	22	19	31	26	1.98
75783382--75783429	20	2.6	19	84	12	64	20	14	4	60	1.51
75783383--75783421	20	2.0	20	94	0	69	23	17	5	53	1.63
75783889--75783930	21	2.0	21	85	0	57	59	0	2	38	1.10
75784320--75784350	15	2.1	15	100	0	62	19	35	19	25	1.95
75790079--75790139	30	2.0	30	90	0	95	59	0	0	40	0.98
75790406--75790450	24	1.9	24	81	4	56	42	2	15	40	1.59
75793880--75793907	13	2.2	13	100	0	56	21	14	7	57	1.61
75794208--75794238	15	2.1	15	93	0	53	61	6	0	32	1.21
75795949--75796009	30	2.0	30	90	0	95	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75796276--75796320	24	1.9	24	81	4	56	42	2	15	40	1.59
75799750--75799777	13	2.2	13	100	0	56	21	14	7	57	1.61
75800078--75800108	15	2.1	15	93	0	53	61	6	0	32	1.21
75805059--75805102	20	2.2	20	84	8	54	29	13	4	52	1.60
75807513--75807616	49	2.1	49	83	3	129	31	29	15	23	1.95
75814493--75814522	16	1.9	15	93	6	51	33	23	0	43	1.54
75814727--75814958	50	4.7	49	77	8	218	30	25	18	25	1.98
75814772--75814953	101	1.8	101	88	0	283	29	24	19	26	1.98
75817149--75817186	20	2.0	19	90	10	60	50	15	28	5	1.66
75817331--75817357	13	2.1	13	100	0	54	14	33	37	14	1.88
75818410--75818444	5	7.4	5	87	12	56	42	0	0	57	0.99
75818400--75818443	13	3.5	13	79	14	56	38	0	0	61	0.96
75818399--75818444	18	2.6	18	92	0	74	39	0	0	60	0.97
75818410--75818455	23	2.0	23	82	0	56	50	0	2	47	1.13
75818444--75818497	17	3.2	16	80	12	56	74	1	11	12	1.16
75820458--75820520	31	2.0	31	90	0	99	22	17	23	36	1.95
75820465--75820531	31	2.2	31	86	0	89	22	17	17	41	1.90
75820792--75820820	11	2.7	11	94	5	51	41	10	0	48	1.37
75820823--75820876	6	8.7	6	76	15	56	74	3	1	20	1.07
75820823--75820900	31	2.5	31	82	15	90	70	2	2	24	1.12
75823940--75823992	6	8.8	6	93	0	79	50	39	0	9	1.35
75823940--75823992	18	2.9	18	94	0	88	50	39	0	9	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75827064--75827098	16	2.1	17	94	5	63	68	5	0	25	1.11
75827841--75827881	15	2.9	14	82	7	55	48	26	2	21	1.63
75828025--75828055	14	2.2	14	94	0	53	19	0	22	58	1.40
75828008--75828120	38	2.7	44	73	17	121	18	0	29	52	1.46
75828125--75828213	41	2.1	42	89	2	135	22	23	16	37	1.94
75828147--75828279	70	2.0	66	88	5	194	21	22	18	37	1.94
75828646--75828671	8	3.2	8	100	0	52	34	42	11	11	1.77
75834068--75834144	40	1.9	40	83	0	100	36	32	16	14	1.89
75837713--75837767	24	2.3	24	80	0	65	21	3	5	69	1.25
75837716--75837767	20	2.8	18	80	16	54	21	3	5	69	1.26
75862486--75862546	30	2.0	30	83	0	77	31	22	8	37	1.84
75868805--75869261	133	3.4	133	75	7	430	32	15	21	30	1.94
75868792--75869950	44	25.6	45	70	11	363	32	16	20	30	1.94
75868791--75869917	89	12.4	88	71	12	431	32	15	20	30	1.94
75869371--75869560	95	2.0	95	83	0	236	35	16	17	30	1.92
75869206--75869549	139	2.5	140	77	7	383	34	14	19	31	1.92
75871706--75871757	3	17.3	3	78	7	52	26	0	3	69	1.06
75872456--75872496	19	2.3	19	84	12	52	53	9	7	29	1.60
75873427--75873455	14	2.0	15	93	6	51	48	20	3	27	1.66
75874674--75874764	43	2.1	43	86	8	123	37	3	1	58	1.22
75875259--75875306	25	1.9	25	82	0	60	35	14	29	20	1.93
75875387--75875448	24	2.5	24	82	7	63	35	17	25	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75881143--75881255	27	4.2	27	72	12	81	57	0	1	39	1.15
75881667--75881700	17	2.1	17	88	5	52	38	0	2	58	1.13
75884811--75884840	15	2.0	15	93	0	51	30	0	0	70	0.88
75892424--75892593	46	3.7	46	75	12	168	29	27	20	22	1.98
75892429--75892599	93	1.8	93	91	2	281	28	28	21	22	1.99
75893020--75893079	30	2.0	30	90	0	93	30	25	8	36	1.85
75901675--75901725	25	2.0	25	100	0	102	37	15	19	27	1.92
75906316--75906369	19	2.9	19	86	2	65	66	1	0	31	1.02
75906521--75906573	27	2.0	27	81	7	63	62	1	3	32	1.24
75911357--75911423	17	4.1	17	70	14	52	19	2	2	74	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253