genome.fa.s4.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  164  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53104533--53104639	42	2.5	42	77	7	117	24	18	25	31	1.98
53120788--53120822	17	2.1	17	94	0	61	54	0	14	31	1.40
53123129--53123170	22	2.0	21	85	4	57	21	28	30	19	1.97
53135812--53135946	40	3.4	40	91	3	220	22	22	31	24	1.99
53136173--53136216	22	2.0	22	82	8	54	31	11	13	43	1.80
53143935--53144110	40	4.4	40	87	2	257	22	22	29	26	1.99
53144337--53144380	22	2.0	22	82	8	54	31	11	13	43	1.80
53155650--53155750	51	2.0	51	98	0	193	33	24	21	19	1.97
53158555--53158592	20	2.0	18	90	10	58	55	0	39	5	1.23
53165762--53165935	87	2.0	87	94	0	303	44	13	23	18	1.85
53177925--53178052	46	2.7	48	82	4	179	22	31	21	25	1.98
53177928--53178103	47	3.7	47	74	18	161	22	30	21	26	1.98
53177925--53178100	94	1.9	94	88	4	266	23	30	19	26	1.98
53182557--53182799	50	4.8	51	76	7	210	30	27	17	24	1.97
53188294--53188336	23	1.9	22	95	0	68	34	23	23	18	1.96
53194253--53194289	17	2.2	17	100	0	74	35	5	0	59	1.20
53201182--53201206	8	3.1	8	100	0	50	88	0	0	12	0.53
53201202--53201239	12	3.2	12	85	3	51	78	0	21	0	0.74
53201242--53201285	6	7.2	6	97	2	79	34	15	0	50	1.45
53201654--53201714	31	2.0	31	83	0	77	37	3	8	50	1.48
53201841--53201899	29	2.0	30	83	9	77	49	15	6	28	1.70
53202339--53202375	13	2.9	12	88	11	56	32	2	0	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53203029--53203072	18	2.4	18	76	0	52	29	9	18	43	1.80
53205892--53206030	37	3.8	37	94	0	233	25	31	19	23	1.98
53206149--53206514	47	7.7	47	91	1	590	29	29	7	33	1.86
53206149--53206514	143	2.6	141	91	3	592	29	29	7	33	1.86
53208372--53208491	56	2.1	56	98	0	231	22	23	9	45	1.81
53210502--53212110	802	2.0	802	99	0	3182	32	21	16	29	1.95
53221863--53221905	20	2.2	20	87	8	61	39	11	0	48	1.40
53246923--53246962	19	2.1	19	100	0	80	20	30	10	40	1.85
53250652--53250789	43	3.2	41	74	12	118	35	21	14	28	1.93
53253479--53253579	20	5.1	19	79	11	89	42	22	25	8	1.83
53253453--53253579	40	3.2	39	80	9	139	40	21	27	11	1.87
53258860--53259047	38	5.0	38	79	6	177	38	17	14	29	1.90
53260475--53260744	39	6.9	39	77	5	215	16	28	19	35	1.94
53262929--53263081	42	3.5	42	75	10	121	25	16	26	32	1.96
53268097--53268216	43	2.8	41	80	10	127	24	21	27	26	1.99
53280191--53280367	40	4.4	40	83	4	225	25	27	22	24	2.00
53280191--53280355	80	2.1	79	89	3	251	26	27	22	23	2.00
53288183--53288359	40	4.4	40	85	4	234	25	27	22	23	2.00
53293626--53293781	40	3.9	40	77	5	172	28	26	19	25	1.98
53293618--53293774	80	2.0	79	85	6	210	28	26	19	25	1.99
53300039--53300141	44	2.4	42	84	10	145	25	17	25	32	1.97
53302228--53302402	46	3.8	46	78	13	205	20	20	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53302225--53302396	93	1.8	93	94	0	308	20	20	29	28	1.98
53305198--53305227	14	2.1	14	100	0	60	33	33	0	33	1.58
53305417--53305957	50	10.7	50	80	3	593	31	26	17	24	1.97
53305417--53305952	101	5.3	101	84	1	671	31	26	17	24	1.97
53305417--53305952	203	2.7	201	86	2	754	31	26	17	24	1.97
53305418--53305978	304	1.8	303	90	1	899	31	26	16	24	1.97
53310746--53310803	22	2.6	22	97	0	107	24	37	27	10	1.88
53312559--53312733	50	3.5	50	86	2	217	33	26	16	24	1.95
53315794--53316015	67	3.4	64	76	9	214	32	15	29	22	1.95
53320003--53320157	42	3.7	42	83	3	177	29	23	16	30	1.96
53327284--53327441	51	3.1	51	95	0	271	31	15	24	28	1.96
53328625--53328779	42	3.7	41	81	5	157	28	22	16	32	1.96
53330082--53330173	17	5.4	17	67	27	52	41	5	2	51	1.37
53331148--53331200	27	2.0	27	84	0	70	15	22	22	39	1.91
53331729--53331829	50	2.0	50	100	0	202	15	37	0	46	1.47
53332126--53332168	20	2.2	20	100	0	86	16	25	13	44	1.85
53335233--53335346	61	1.9	58	87	5	165	50	2	5	42	1.39
53335229--53335370	61	2.4	58	77	10	153	50	3	4	41	1.39
53335319--53335392	17	4.2	17	78	11	78	52	2	1	43	1.23
53336475--53336553	22	3.6	22	100	0	158	22	32	30	13	1.93
53341915--53341970	23	2.4	23	93	0	94	51	16	5	26	1.65
53345236--53345286	23	2.2	23	96	0	93	29	13	25	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53347541--53347578	18	2.1	19	85	5	51	44	7	13	34	1.72
53348413--53348464	25	2.1	24	82	3	59	50	5	1	42	1.37
53348767--53348815	26	1.9	25	84	12	64	36	0	2	61	1.08
53369675--53369745	35	2.0	35	100	0	142	39	25	19	15	1.91
53371323--53371366	17	2.8	16	83	10	54	54	0	0	45	0.99
53374252--53374287	16	2.2	16	90	0	54	63	0	5	30	1.17
53384705--53384802	40	2.4	41	82	3	126	27	27	22	22	1.99
53390587--53390767	96	1.9	96	83	5	238	24	29	18	26	1.98
53390587--53390948	46	7.6	47	75	12	221	24	29	18	27	1.98
53390682--53390956	94	2.9	94	76	10	278	24	30	18	26	1.98
53399599--53399868	40	6.8	40	82	2	301	17	28	16	37	1.92
53399599--53399878	80	3.5	80	83	2	332	17	28	16	37	1.92
53399615--53399839	20	11.3	20	64	6	71	16	29	16	37	1.91
53403243--53403322	40	2.0	40	85	0	106	21	15	28	35	1.93
53403332--53403402	28	2.5	28	83	0	97	30	8	29	30	1.87
53418035--53418260	47	4.8	47	77	9	187	26	19	29	24	1.98
53421680--53421811	40	3.3	40	86	5	171	25	21	27	25	2.00
53421680--53421844	40	4.2	39	82	7	158	26	21	26	25	1.99
53421680--53421844	79	2.1	79	81	8	185	26	21	26	25	1.99
53431348--53431382	16	2.2	16	94	0	61	25	11	25	37	1.90
53459258--53459290	17	1.9	17	100	0	66	18	12	12	57	1.64
53460015--53460369	177	2.0	177	97	0	665	28	13	20	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53466321--53466432	38	2.9	38	77	7	104	38	24	18	18	1.93
53470175--53470240	20	3.3	20	68	8	62	21	36	13	28	1.91
53470139--53470419	40	7.0	40	84	0	355	17	28	17	36	1.93
53470235--53470419	20	9.2	20	66	4	95	15	29	18	36	1.92
53470139--53470419	120	2.3	119	88	1	400	17	28	17	36	1.93
53470139--53470454	40	7.9	40	80	1	312	18	27	17	35	1.94
53470139--53470454	120	2.6	118	82	4	375	18	27	17	35	1.94
53486975--53487012	17	2.3	17	86	4	51	65	0	5	28	1.14
53487626--53487667	18	2.3	18	100	0	84	14	19	4	61	1.49
53493001--53493038	19	2.0	19	100	0	76	42	10	26	21	1.85
53493804--53493829	12	2.2	12	100	0	52	23	0	34	42	1.54
53503789--53503843	7	7.9	7	78	15	60	43	34	0	21	1.53
53503794--53503843	14	3.6	14	89	5	75	42	36	0	22	1.54
53503789--53503843	21	2.6	21	81	16	69	43	34	0	21	1.53
53503786--53503854	7	9.9	7	79	17	54	40	34	0	24	1.56
53503904--53503946	21	2.0	21	82	8	52	48	20	0	30	1.50
53505316--53505356	6	6.8	6	88	0	64	2	31	29	36	1.71
53508105--53508183	37	2.1	37	88	0	113	26	31	17	24	1.97
53508302--53508602	47	6.4	47	92	0	449	28	28	9	33	1.89
53511808--53511877	27	2.6	27	95	2	113	31	28	12	27	1.93
53511808--53511905	28	3.5	28	90	2	135	31	28	13	26	1.94
53520094--53520189	28	3.5	28	87	5	117	30	29	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53538230--53538275	21	2.2	21	96	0	83	26	19	54	0	1.44
53543041--53543079	19	2.1	19	85	0	51	71	7	5	15	1.26
53543518--53543632	55	2.1	56	82	8	137	34	22	24	18	1.96
53543543--53543632	27	3.2	27	81	7	101	32	24	24	18	1.97
53543738--53543801	28	2.3	28	91	5	103	29	7	29	32	1.86
53548709--53548735	9	3.0	9	100	0	54	22	0	44	33	1.53
53550980--53551020	19	2.2	19	95	0	73	24	7	4	63	1.40
53556104--53556147	22	1.9	24	86	9	65	40	11	0	47	1.39
53565614--53565697	6	13.7	6	91	5	123	66	3	17	11	1.37
53567039--53567092	17	3.1	19	76	12	53	44	3	0	51	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253