genome.fa.s4.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  210  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69208814--69208864	18	2.8	18	77	8	59	3	31	0	64	1.11
69210095--69210210	28	4.2	28	84	2	146	19	25	18	36	1.95
69212602--69212746	48	3.0	48	84	0	191	31	23	8	36	1.84
69218320--69218433	43	2.7	43	75	2	113	35	21	13	29	1.92
69221805--69221991	27	7.0	27	77	13	172	39	21	14	24	1.91
69224672--69224790	29	4.2	29	74	8	102	27	29	13	29	1.94
69224674--69224786	58	2.0	57	82	1	136	26	30	14	29	1.95
69226242--69226279	8	4.8	8	87	12	60	7	0	39	52	1.31
69227303--69227415	41	2.7	41	80	2	109	28	27	14	30	1.95
69228033--69228071	20	2.0	20	85	10	53	53	20	2	23	1.57
69228807--69228854	23	2.1	23	84	7	62	47	4	27	20	1.68
69231785--69231869	32	2.7	32	92	0	134	25	18	27	28	1.98
69244864--69244897	17	2.0	17	100	0	68	29	0	17	52	1.45
69247995--69248020	13	2.0	13	100	0	52	23	30	30	15	1.95
69248393--69248440	24	2.0	24	100	0	96	8	20	0	70	1.12
69266743--69266820	40	1.9	41	82	12	99	48	0	2	48	1.15
69268094--69268177	44	1.9	44	82	4	107	23	17	23	34	1.96
69268331--69268414	39	2.1	40	86	2	116	35	8	21	34	1.84
69268402--69268447	20	2.4	20	85	7	60	39	2	17	41	1.62
69269276--69269332	21	2.7	21	80	0	69	24	26	31	17	1.97
69270882--69271144	40	6.6	40	87	3	316	24	20	28	26	1.99
69270921--69271179	80	3.3	80	84	3	238	25	20	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69278829--69279051	40	5.6	39	82	5	223	25	20	27	26	1.99
69278904--69279086	79	2.3	80	81	5	212	26	20	27	25	1.99
69285528--69285566	21	1.9	21	89	5	62	12	38	28	20	1.89
69291267--69291528	47	5.6	46	78	6	208	27	20	28	22	1.99
69291266--69291517	93	2.7	92	78	6	249	28	20	28	23	1.99
69298360--69298570	47	4.5	47	76	11	159	29	18	27	25	1.98
69298408--69298570	47	3.5	47	77	10	165	28	18	27	25	1.98
69304555--69304598	20	2.2	20	84	8	54	29	22	4	43	1.73
69305175--69305221	23	2.0	23	100	0	94	46	12	8	31	1.72
69320503--69320777	50	5.7	49	75	8	242	28	18	29	24	1.98
69320503--69320747	95	2.6	95	90	0	373	27	19	28	24	1.98
69335759--69335834	36	2.1	36	82	0	89	19	15	30	34	1.93
69337312--69337337	12	2.2	12	100	0	52	84	7	0	7	0.77
69342300--69342339	19	2.0	19	85	9	53	15	5	15	65	1.44
69343157--69343204	22	2.2	21	85	3	69	75	8	10	6	1.20
69351235--69351284	22	2.3	22	93	3	84	12	40	28	20	1.87
69387483--69387515	17	1.9	17	93	0	57	45	6	33	15	1.70
69391376--69391442	22	3.2	21	84	14	86	64	7	2	25	1.34
69391594--69391659	33	2.0	33	87	0	96	24	12	51	12	1.73
69394140--69394227	27	3.3	28	73	19	80	54	10	0	35	1.34
69394230--69394259	3	9.7	3	92	7	51	0	33	0	66	0.92
69394231--69394262	13	2.4	13	94	5	55	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69394490--69394519	3	10.0	3	92	0	51	63	0	3	33	1.11
69394784--69394848	34	1.9	35	87	6	98	24	20	15	40	1.91
69398114--69398282	46	3.6	45	80	10	155	23	30	19	26	1.98
69398114--69398285	94	1.8	92	84	7	231	23	30	19	26	1.98
69401769--69401848	39	2.1	39	90	0	124	33	16	18	31	1.93
69402162--69402207	20	2.2	20	85	11	58	58	2	13	26	1.46
69402536--69402571	12	3.1	12	96	4	65	38	16	8	36	1.79
69405574--69405758	79	2.3	82	83	7	229	24	27	22	24	2.00
69405555--69405758	40	5.1	40	81	8	229	24	27	22	25	2.00
69408747--69408795	25	1.9	26	88	12	75	59	6	12	22	1.55
69408747--69408801	25	2.2	25	83	9	67	63	5	10	20	1.46
69427147--69427285	21	6.5	21	70	6	82	48	17	18	15	1.82
69427147--69427285	42	3.3	43	83	6	131	48	17	18	15	1.82
69431925--69432101	48	3.9	47	77	14	176	32	15	21	29	1.95
69432027--69432124	38	2.6	38	98	0	187	30	13	27	28	1.94
69435524--69435583	31	1.9	31	82	0	75	25	16	30	28	1.97
69437107--69437156	26	1.9	26	87	0	73	36	26	14	24	1.93
69448699--69448723	12	2.1	12	100	0	50	28	8	24	40	1.83
69459875--69459907	13	2.6	13	90	4	50	48	12	0	39	1.40
69462807--69462853	6	7.8	6	90	0	67	78	2	4	14	0.99
69468239--69468271	13	2.6	13	90	4	50	48	12	0	39	1.40
69472784--69472963	48	3.9	48	81	7	219	28	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69472895--69472988	42	2.2	42	84	0	125	31	13	23	30	1.93
69479199--69479235	18	2.1	18	100	0	74	16	21	18	43	1.88
69480158--69480211	27	2.0	28	88	3	83	33	12	11	42	1.79
69480152--69480235	27	2.8	30	68	15	75	38	16	10	34	1.84
69483260--69483290	12	2.6	12	89	0	53	90	0	9	0	0.46
69484302--69484342	17	2.3	18	88	12	59	41	14	2	41	1.59
69487333--69487421	41	2.2	40	82	6	108	42	13	23	20	1.87
69487399--69487657	41	6.4	41	85	4	328	35	22	22	19	1.96
69487355--69487657	82	3.7	82	84	4	373	37	21	22	19	1.95
69487399--69487657	123	2.1	121	89	1	401	35	22	22	19	1.96
69487814--69487911	14	6.7	14	70	9	61	28	1	24	45	1.60
69487825--69487906	21	3.7	21	75	12	83	28	1	26	43	1.62
69487829--69487922	46	2.0	46	97	0	179	29	2	24	43	1.66
69487967--69488077	14	7.8	14	63	17	50	23	0	38	36	1.61
69487949--69488046	7	14.0	7	71	10	58	21	0	39	38	1.54
69489997--69490112	58	2.0	58	100	0	232	29	10	22	37	1.87
69492978--69493126	43	3.4	43	89	0	217	26	18	27	27	1.98
69497062--69497275	55	4.0	53	80	7	209	37	16	23	21	1.93
69512987--69513013	9	3.0	9	100	0	54	22	33	11	33	1.89
69513430--69513706	54	5.0	54	80	7	279	38	16	23	22	1.93
69513430--69513706	108	2.5	109	82	6	317	38	16	23	22	1.93
69513430--69513696	59	4.9	54	81	7	268	36	16	23	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69516176--69516305	49	2.7	48	83	4	154	26	25	20	27	1.99
69522911--69523278	45	7.8	48	75	15	254	26	19	29	24	1.98
69524261--69524316	28	2.0	28	89	10	87	14	17	46	21	1.84
69536518--69536622	49	2.2	48	82	3	122	27	28	16	27	1.97
69536544--69536674	49	2.7	49	85	4	167	23	30	19	26	1.98
69543727--69543846	55	2.2	55	87	0	168	18	25	30	25	1.98
69547517--69547548	14	2.4	13	90	10	55	62	12	6	18	1.50
69559530--69559702	43	4.0	43	68	11	138	32	26	16	24	1.96
69563333--69563361	15	1.9	15	100	0	58	62	6	6	24	1.45
69563350--69563422	22	3.3	22	68	21	62	50	9	5	34	1.58
69565441--69565476	3	12.0	3	100	0	72	33	0	0	66	0.92
69575120--69575159	18	2.2	19	86	13	57	40	2	0	57	1.12
69578698--69578737	11	3.2	13	80	20	57	57	5	0	37	1.21
69587464--69587504	21	2.0	21	90	0	64	29	21	29	19	1.98
69593935--69593995	19	3.1	20	84	11	81	49	0	0	50	1.00
69593967--69594007	20	2.0	21	86	9	59	41	0	0	58	0.98
69594034--69594058	10	2.5	10	100	0	50	36	0	0	64	0.94
69594776--69594810	18	1.9	18	88	11	54	25	2	5	65	1.28
69594777--69594827	18	2.8	18	77	16	52	31	1	5	60	1.31
69602075--69602113	19	2.0	20	90	5	62	61	0	38	0	0.96
69616950--69617131	48	3.8	47	72	5	141	29	20	26	23	1.99
69616959--69617137	98	1.8	96	86	4	261	29	20	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69625197--69625228	9	3.7	9	95	4	57	21	21	12	43	1.86
69633258--69634463	88	13.7	88	85	3	1408	35	22	21	21	1.96
69633258--69634463	265	4.6	265	85	3	1497	35	22	21	21	1.96
69634062--69634206	44	3.3	43	68	21	129	33	23	22	20	1.97
69633258--69634290	440	2.3	439	90	1	1615	35	22	21	20	1.96
69635878--69636113	3	78.0	3	72	12	153	30	6	2	60	1.34
69635953--69636077	22	5.9	22	74	13	86	32	8	0	59	1.32
69636051--69636128	36	2.1	37	83	2	95	35	7	1	55	1.37
69635976--69636129	45	3.6	43	73	17	126	32	7	1	58	1.35
69636118--69636156	18	2.2	18	85	0	51	28	17	0	53	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253