genome.fa.s4.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  110  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34453144--34453414	94	2.9	93	77	10	304	22	28	20	28	1.98
34459762--34459862	40	2.5	40	85	9	136	25	26	27	19	1.99
34465045--34465109	28	2.3	28	87	10	89	27	12	26	33	1.92
34470330--34470418	40	2.2	40	84	4	117	22	25	26	24	2.00
34475531--34475637	27	4.0	26	79	6	115	37	18	24	19	1.94
34475533--34475637	54	2.0	53	83	9	133	38	17	24	20	1.93
34477045--34477097	24	2.2	24	93	0	88	20	41	3	33	1.70
34480826--34481048	119	1.9	120	84	6	301	25	27	22	24	2.00
34480824--34481048	40	5.7	40	85	6	287	25	28	22	24	2.00
34488814--34489034	117	1.9	119	83	5	297	25	27	22	24	2.00
34488812--34489034	40	5.7	40	86	6	285	25	27	21	24	1.99
34494835--34494960	47	2.7	46	80	9	139	24	26	19	28	1.99
34496415--34496441	11	2.5	11	100	0	54	33	7	18	40	1.78
34500445--34500629	79	2.3	81	83	9	229	24	22	27	25	2.00
34500446--34500629	40	4.6	40	82	9	207	25	22	27	25	2.00
34500498--34500662	79	2.1	79	84	6	210	26	21	26	25	1.99
34502945--34503094	43	3.5	44	83	9	193	23	20	26	30	1.98
34505551--34505584	13	2.6	13	100	0	68	0	38	38	23	1.55
34517945--34518122	51	3.5	52	83	6	206	27	28	16	28	1.97
34529909--34529963	23	2.6	21	85	8	67	16	5	0	78	0.93
34529918--34529985	29	2.3	29	84	5	82	14	5	1	77	1.02
34529917--34529978	23	2.6	24	79	7	72	14	4	1	79	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34529917--34529985	6	11.5	6	81	4	77	14	5	1	78	1.01
34529918--34530005	12	7.4	11	77	13	70	17	5	1	76	1.04
34529933--34529995	17	3.7	16	81	12	63	17	6	1	74	1.10
34532905--34532937	13	2.6	13	90	4	50	39	0	12	48	1.40
34533428--34533604	52	3.5	50	86	4	230	26	29	15	28	1.96
34534690--34534737	23	2.1	23	100	0	96	60	4	10	25	1.47
34536568--34536599	12	2.7	12	90	0	55	15	6	15	62	1.51
34549519--34549556	19	2.0	19	85	10	51	68	0	10	21	1.19
34550283--34550314	14	2.4	13	90	10	55	62	12	6	18	1.50
34555957--34556074	27	4.4	27	86	7	141	44	17	14	23	1.86
34556473--34556578	34	3.1	34	75	11	94	25	22	23	28	1.99
34560544--34560766	40	5.6	40	85	8	285	26	26	21	24	2.00
34560544--34560766	82	2.8	80	87	8	303	26	26	21	24	2.00
34560544--34560766	122	1.8	119	87	4	331	26	26	21	24	2.00
34568658--34568881	40	5.6	40	83	6	283	26	26	21	24	2.00
34568658--34568881	83	2.8	80	86	4	299	26	26	21	24	2.00
34571055--34571178	54	2.3	53	87	4	169	33	14	12	40	1.83
34571055--34571178	27	4.6	27	83	3	153	33	14	12	40	1.83
34571212--34571290	27	2.9	27	82	0	104	44	20	8	26	1.80
34592618--34592665	20	2.3	21	79	13	55	54	18	0	27	1.44
34593366--34593422	27	2.2	27	84	12	75	38	15	1	43	1.57
34593368--34593544	40	4.4	39	73	9	133	36	18	2	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34593383--34593543	84	2.0	81	81	8	191	36	18	3	42	1.66
34593365--34593544	13	13.4	13	67	17	100	36	18	2	42	1.65
34593365--34593544	26	6.7	26	74	14	127	36	18	2	42	1.65
34600557--34600700	75	1.9	75	91	0	234	36	13	21	28	1.91
34604932--34604984	26	2.0	26	85	0	70	22	13	18	45	1.84
34606552--34606718	48	3.5	46	80	9	167	29	30	14	25	1.95
34606658--34606818	73	2.2	73	90	0	268	24	27	19	28	1.99
34610296--34610397	37	2.8	37	95	1	179	24	32	19	23	1.98
34610570--34611405	48	17.4	48	93	0	1395	31	27	6	34	1.83
34615474--34615955	47	10.1	47	89	4	705	30	12	30	26	1.93
34615474--34615955	147	3.4	142	89	4	636	30	12	30	26	1.93
34615474--34615955	194	2.5	192	93	3	805	30	12	30	26	1.93
34615766--34615840	23	3.2	23	62	23	57	29	10	32	28	1.90
34615929--34616019	46	2.0	46	84	0	119	32	9	31	25	1.89
34616163--34616270	37	2.9	37	91	0	162	25	19	29	25	1.98
34620803--34620842	21	1.9	21	84	0	53	37	10	0	52	1.35
34626939--34627013	18	4.2	18	85	0	96	33	13	22	30	1.92
34636508--34636545	16	2.3	17	83	16	53	31	2	0	65	1.06
34643888--34644042	81	1.9	82	84	4	206	27	16	7	49	1.72
34648482--34648801	143	2.3	140	84	4	383	33	18	20	27	1.96
34650812--34651275	38	11.0	38	70	19	271	30	23	15	30	1.95
34650819--34651195	85	4.4	85	93	0	637	30	23	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34650942--34651238	47	6.7	46	73	14	241	31	22	14	31	1.94
34651112--34651245	48	2.8	48	87	1	171	31	22	15	30	1.95
34651027--34651275	133	1.9	132	86	2	356	30	23	15	30	1.95
34656493--34656953	38	10.9	38	67	21	188	31	24	14	29	1.94
34656500--34656876	85	4.4	85	90	1	585	31	24	14	29	1.94
34656788--34656926	48	2.9	48	83	1	181	30	22	15	30	1.95
34659121--34659160	16	2.4	17	84	15	57	32	2	0	65	1.06
34661229--34661267	14	2.8	14	88	7	53	43	12	12	30	1.81
34664434--34664459	13	2.0	13	100	0	52	0	38	23	38	1.55
34665354--34665480	41	3.1	40	90	2	191	33	20	24	21	1.97
34666093--34666141	24	2.0	24	100	0	98	53	0	4	42	1.20
34667257--34667306	17	2.9	17	93	0	91	6	30	4	60	1.39
34671896--34672028	43	3.1	43	87	1	178	26	16	28	28	1.97
34672385--34672557	47	3.7	47	75	9	147	25	31	18	24	1.98
34679926--34680051	39	3.2	39	87	0	171	23	19	28	29	1.98
34679926--34680089	39	4.2	39	82	2	161	22	20	28	28	1.99
34691204--34691376	46	3.7	46	75	13	165	21	18	29	30	1.97
34691197--34691368	93	1.8	93	87	0	254	20	19	29	29	1.97
34691914--34691939	12	2.2	12	100	0	52	26	15	26	30	1.96
34696612--34696882	46	5.9	44	71	15	192	22	19	28	29	1.98
34696612--34696876	93	2.9	91	87	7	365	22	19	29	28	1.98
34707570--34707610	20	2.0	20	100	0	82	34	0	19	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34714225--34714376	40	3.8	40	88	3	200	24	21	27	26	1.99
34714225--34714396	80	2.2	80	82	5	197	23	20	27	28	1.99
34717144--34717185	21	2.0	21	100	0	84	23	28	23	23	2.00
34717104--34717225	61	2.0	61	95	0	217	25	22	26	25	2.00
34717165--34717250	40	2.2	40	89	4	129	23	23	29	24	1.99
34719152--34719298	61	2.4	61	90	2	224	31	14	20	34	1.92
34723941--34724001	30	2.0	30	87	0	86	39	8	22	29	1.83
34727832--34728009	27	6.6	27	83	3	196	26	14	29	29	1.95
34727832--34728009	54	3.3	55	84	4	236	26	14	29	29	1.95
34729700--34729910	49	4.5	48	76	9	193	24	28	19	27	1.99
34738173--34738315	38	3.5	38	78	15	160	30	14	25	29	1.95
34738086--34738325	86	2.8	86	85	0	311	30	14	25	29	1.95
34740146--34740218	29	2.5	28	82	10	94	27	13	30	28	1.94
34740176--34740505	174	1.9	175	92	2	556	30	14	23	31	1.94
34745578--34745749	93	1.8	93	86	0	245	22	19	27	29	1.98
34749127--34749186	30	2.0	30	90	0	93	28	25	8	38	1.84
34758933--34759066	48	2.8	49	82	5	177	30	16	21	31	1.95
34768550--34768652	43	2.4	43	83	3	127	32	25	17	25	1.97
34773413--34773499	43	2.0	44	90	2	140	27	29	21	20	1.98
34783388--34783534	42	3.5	41	78	3	150	29	24	15	30	1.96
34786035--34786127	34	2.8	33	77	4	89	30	23	21	24	1.99
34793733--34793910	27	6.6	27	74	6	119	28	16	26	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34793730--34793910	82	2.2	81	81	4	204	28	16	25	29	1.97
34801734--34801911	27	6.6	27	74	6	119	28	16	26	29	1.97
34801731--34801911	82	2.2	81	81	4	204	28	16	25	29	1.97
34805461--34805502	21	2.0	21	90	0	66	33	30	0	35	1.58
34813432--34813504	35	2.1	35	97	0	137	39	17	5	36	1.73
34818509--34818548	21	1.9	21	85	10	55	32	2	0	65	1.06
34819527--34819564	20	1.9	20	94	0	67	28	31	21	18	1.97
34832478--34832606	41	3.1	41	84	4	154	20	20	25	34	1.96
34840054--34840189	41	3.3	41	80	6	159	19	19	23	37	1.94
34841972--34842005	14	2.4	14	90	9	52	26	8	8	55	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253