genome.fa.s4.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  148  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47383279--47383361	25	3.4	25	82	11	84	30	21	22	25	1.99
47383568--47383650	31	2.7	30	92	3	132	30	15	25	28	1.96
47383656--47383749	33	2.9	33	69	18	90	23	21	26	28	1.99
47389693--47389812	47	2.5	49	80	12	135	25	30	15	27	1.96
47395291--47395326	14	2.6	14	95	4	65	44	13	0	41	1.44
47400793--47400887	41	2.3	42	90	1	147	20	27	33	18	1.96
47409703--47409750	25	1.9	25	82	0	60	37	16	8	37	1.79
47418313--47418493	40	4.6	40	89	2	260	22	22	26	29	1.99
47425184--47425250	21	3.2	21	70	4	55	28	19	28	23	1.98
47428098--47428152	22	2.5	22	96	0	101	36	10	7	45	1.67
47431613--47431734	46	2.6	47	84	5	147	26	22	14	36	1.93
47436073--47436260	40	4.7	40	83	0	241	21	28	17	32	1.96
47436073--47436260	80	2.3	80	88	0	286	21	28	17	32	1.96
47436796--47436835	16	2.5	16	87	0	62	45	12	12	30	1.79
47437806--47437878	36	2.0	36	89	0	110	43	15	19	21	1.87
47437806--47437878	18	4.1	18	83	0	92	43	15	19	21	1.87
47438203--47438441	27	9.0	27	74	5	155	43	18	12	25	1.85
47438201--47438430	54	4.3	54	77	7	193	43	18	13	24	1.85
47438240--47438430	81	2.4	81	81	3	217	43	16	13	26	1.84
47438452--47438534	27	3.1	27	87	0	85	21	15	24	38	1.92
47438452--47438564	54	2.1	53	78	4	118	19	15	23	41	1.89
47438464--47438573	27	4.1	26	87	4	121	19	14	22	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47440219--47440253	10	3.4	10	96	4	61	25	11	0	62	1.28
47440805--47440854	26	1.9	26	91	0	82	32	16	20	32	1.94
47450802--47450958	43	3.7	42	74	12	124	34	26	13	25	1.93
47456747--47456796	19	2.7	19	93	3	84	58	6	10	26	1.54
47458423--47458466	21	2.0	23	86	13	65	52	0	6	40	1.28
47458825--47458876	18	2.8	18	75	16	52	36	7	5	50	1.55
47458873--47458923	26	2.0	26	88	0	75	35	11	17	35	1.87
47458899--47459006	18	6.1	18	75	2	110	35	5	15	43	1.70
47460155--47460186	16	2.0	16	93	0	55	28	0	21	50	1.49
47463948--47464003	28	2.0	28	100	0	112	25	14	32	28	1.94
47470325--47470423	27	3.7	27	91	0	162	38	20	13	28	1.90
47474245--47474385	57	2.5	57	79	10	144	30	19	18	31	1.96
47476234--47476386	29	5.2	30	74	12	97	30	18	19	32	1.96
47476234--47476354	29	4.2	29	77	13	106	29	19	20	30	1.97
47476234--47476354	58	2.1	58	82	11	142	29	19	20	30	1.97
47476362--47476425	31	2.1	31	84	0	83	23	17	15	43	1.87
47477036--47477093	26	2.2	26	96	3	107	32	20	3	43	1.69
47477725--47477753	15	1.9	15	100	0	58	44	0	6	48	1.29
47478466--47478504	5	7.4	5	88	11	60	41	0	0	58	0.98
47478471--47478509	17	2.3	17	100	0	78	41	0	0	58	0.98
47478459--47478504	22	2.1	22	100	0	92	41	0	0	58	0.98
47478466--47478516	17	3.1	16	86	10	68	39	1	0	58	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47478451--47478523	22	3.6	20	74	22	64	38	1	2	57	1.22
47492307--47492366	25	2.3	27	80	11	72	0	31	3	65	1.09
47492679--47492725	21	2.2	21	84	0	58	46	4	0	48	1.21
47496504--47496678	48	3.6	49	86	3	196	29	30	16	24	1.96
47509290--47509417	40	3.2	40	92	2	202	32	23	19	24	1.97
47509290--47509417	42	3.1	42	89	4	206	32	23	19	24	1.97
47527092--47527139	24	1.9	26	84	16	66	43	12	6	37	1.68
47529660--47529717	24	2.4	25	79	2	64	29	18	20	31	1.97
47533453--47533509	27	2.1	28	83	9	73	33	10	8	47	1.69
47535907--47535981	21	3.7	20	80	3	69	24	10	13	52	1.72
47536483--47536536	21	2.7	21	81	18	62	33	0	0	66	0.92
47536559--47536611	24	2.2	24	77	12	56	37	0	0	62	0.96
47536497--47536640	61	2.3	63	85	8	186	40	0	1	56	1.13
47540327--47540357	15	2.1	15	100	0	62	48	12	25	12	1.77
47540795--47540872	39	2.0	38	92	2	129	41	3	15	39	1.65
47541685--47542072	194	2.0	194	90	2	609	33	16	17	32	1.93
47546431--47546476	10	4.6	10	86	5	58	69	2	0	28	1.00
47546457--47546512	24	2.2	24	81	12	60	60	8	1	28	1.37
47547102--47547139	20	1.9	19	89	5	58	0	18	0	81	0.69
47548083--47548137	15	3.2	17	81	18	62	78	0	1	20	0.85
47548088--47548139	6	8.5	6	82	18	63	76	0	1	21	0.87
47554259--47554514	40	6.4	40	90	2	374	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47556806--47556990	40	4.7	40	82	7	218	23	21	28	26	1.99
47556806--47556988	79	2.3	81	84	7	232	24	21	27	26	1.99
47556807--47557023	79	2.7	78	78	12	228	25	21	27	25	1.99
47569984--47570033	10	5.0	10	81	13	59	68	2	8	22	1.26
47571465--47571509	21	2.2	21	92	7	76	11	20	35	33	1.88
47578963--47579066	46	2.3	46	82	0	127	29	19	27	23	1.98
47579104--47579223	49	2.4	49	86	2	152	33	16	27	22	1.96
47586472--47586536	27	2.4	27	100	0	130	21	21	16	40	1.92
47586719--47586847	46	2.8	47	79	4	145	27	20	31	21	1.98
47586857--47586971	49	2.3	49	85	2	160	28	20	27	23	1.99
47595494--47595554	30	2.0	30	83	0	77	31	22	8	37	1.84
47598843--47598875	13	2.6	13	90	4	50	39	0	12	48	1.40
47602585--47602789	27	7.6	27	86	3	259	26	15	27	30	1.96
47602586--47602789	109	1.9	108	89	3	320	26	15	27	30	1.96
47610751--47610951	27	7.4	27	85	3	251	27	14	27	30	1.95
47615748--47615809	16	3.9	16	83	10	83	17	3	0	79	0.87
47615745--47615820	32	2.3	32	88	6	109	17	3	0	78	0.89
47615745--47615808	5	12.2	5	78	21	69	18	3	0	78	0.89
47615747--47615827	6	13.7	6	76	12	78	16	3	1	79	0.95
47615745--47615827	31	2.5	33	83	15	109	16	3	1	78	0.96
47618198--47618224	13	2.1	13	100	0	54	40	14	22	22	1.90
47618717--47618749	13	2.6	13	90	4	50	39	0	12	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47621690--47621874	50	3.7	47	80	6	190	30	26	17	25	1.98
47621676--47621876	99	2.0	99	83	5	253	30	25	17	25	1.98
47624125--47624283	55	2.9	53	80	10	169	28	34	17	18	1.94
47631575--47631698	45	2.8	44	85	8	157	24	30	21	23	1.99
47631702--47631918	38	5.7	38	92	0	353	31	24	23	20	1.98
47632212--47632297	43	2.0	44	83	2	111	24	29	18	27	1.98
47635504--47635610	46	2.3	46	79	3	117	29	16	30	22	1.96
47635645--47635774	49	2.7	49	85	2	163	33	21	24	20	1.97
47637839--47638010	93	1.8	93	92	2	292	28	28	20	22	1.99
47637832--47638012	46	3.9	46	74	11	181	28	28	19	22	1.98
47642836--47642860	13	1.9	13	100	0	50	72	4	0	24	1.02
47644071--47644120	9	5.6	9	79	11	50	44	0	4	52	1.20
47645795--47645835	21	2.0	21	90	0	64	53	0	0	46	1.00
47646280--47646328	18	2.8	18	79	14	57	53	2	0	44	1.12
47652389--47652474	40	2.1	40	97	2	163	27	19	6	45	1.76
47658516--47658540	12	2.1	12	100	0	50	32	0	16	52	1.44
47658796--47658865	28	2.5	28	88	9	99	31	27	14	27	1.95
47666496--47666565	28	2.5	28	88	9	99	31	27	14	27	1.95
47670924--47671002	41	1.9	41	97	0	149	50	0	13	35	1.42
47672261--47672295	2	17.5	2	100	0	70	51	0	0	48	1.00
47678172--47678196	13	1.9	13	100	0	50	40	8	24	28	1.83
47680831--47680901	24	3.0	24	95	0	124	35	1	38	25	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47682319--47682430	27	4.1	27	83	7	129	15	23	23	38	1.92
47682319--47682430	54	2.1	54	86	3	154	15	23	23	38	1.92
47686589--47686635	24	2.0	24	91	0	76	36	2	38	23	1.67
47688051--47688162	27	4.1	29	80	16	116	16	21	23	39	1.92
47692549--47692639	45	2.0	45	89	0	137	25	14	23	37	1.92
47699293--47699505	40	5.4	40	77	9	204	24	26	23	25	2.00
47706558--47706776	40	5.6	40	83	6	268	25	26	23	24	2.00
47709456--47709494	20	1.9	21	89	5	62	35	15	0	48	1.45
47709666--47709777	41	2.7	43	78	8	115	28	26	18	25	1.98
47709749--47709912	57	2.9	57	94	0	274	36	23	18	21	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253