genome.fa.s4.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  111  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34845617--34845654	18	2.1	18	85	9	51	31	10	7	50	1.66
34857997--34858214	40	5.5	40	90	3	282	27	28	21	22	1.99
34864578--34864794	40	5.5	39	93	3	305	25	29	23	22	1.99
34867251--34867289	20	2.0	20	85	10	53	35	17	0	46	1.49
34869049--34869214	40	4.2	40	82	6	106	24	27	24	24	2.00
34869072--34869214	40	3.6	39	85	6	182	23	25	25	25	2.00
34870400--34870474	38	2.0	38	97	2	143	30	24	13	32	1.93
34876447--34876624	27	6.6	27	74	6	119	28	16	26	29	1.97
34876444--34876624	82	2.2	81	81	4	204	28	16	25	29	1.97
34884452--34884629	27	6.6	27	74	6	119	28	16	26	29	1.97
34884449--34884629	82	2.2	81	81	4	204	28	16	25	29	1.97
34894015--34894040	13	2.0	13	100	0	52	30	0	7	61	1.24
34895552--34895767	40	5.4	40	88	5	323	25	21	25	27	1.99
34902274--34902299	13	2.0	13	100	0	52	30	0	7	61	1.24
34903811--34904028	40	5.5	40	96	0	393	24	22	25	26	2.00
34907093--34907119	13	2.1	13	100	0	54	44	0	33	22	1.53
34911154--34911340	40	4.7	40	89	2	270	24	20	28	26	1.99
34918916--34919102	40	4.7	40	87	2	261	24	21	28	25	1.99
34920478--34920610	42	3.2	41	78	7	117	28	24	17	29	1.97
34922408--34922550	61	2.4	59	89	2	205	30	12	20	35	1.90
34922410--34922550	59	2.3	60	86	4	196	31	12	19	36	1.90
34936085--34936118	9	3.8	9	92	0	50	20	32	35	11	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34940202--34940409	40	5.2	40	85	2	267	25	29	22	23	1.99
34947022--34947057	17	2.2	16	90	5	54	30	44	25	0	1.54
34948409--34948671	40	6.6	40	87	3	316	26	28	20	24	1.99
34950317--34950394	36	2.2	36	97	2	149	19	30	17	32	1.95
34959021--34959193	46	3.7	46	76	10	181	23	20	26	30	1.98
34959018--34959188	93	1.8	93	89	0	270	22	20	26	29	1.98
34977919--34978114	50	3.9	50	82	3	216	28	27	18	26	1.98
34977975--34978056	26	3.2	26	64	19	73	31	30	13	24	1.93
34977932--34978118	101	1.9	99	86	4	268	28	28	17	25	1.98
34980013--34980037	13	1.9	13	100	0	50	4	48	24	24	1.68
34982703--34982784	43	1.9	43	82	0	101	25	14	24	35	1.94
34989851--34989914	33	1.9	33	90	0	101	25	25	23	26	2.00
34990298--34990442	27	5.4	27	85	3	193	26	22	17	33	1.96
34990299--34990469	54	3.2	54	87	5	238	24	21	17	36	1.95
34990298--34990469	27	6.4	27	81	5	154	25	21	17	36	1.95
34994846--34995045	68	2.9	68	76	14	180	23	28	16	32	1.96
35009772--35009845	22	3.3	22	64	17	62	29	10	31	28	1.91
35009634--35010199	47	12.1	47	93	1	838	31	9	30	28	1.89
35009634--35010155	140	3.7	141	92	3	858	31	9	30	28	1.89
35010318--35010396	37	2.1	37	90	0	122	24	18	31	25	1.98
35012238--35012382	43	3.4	43	96	1	265	24	15	34	26	1.94
35012364--35012437	29	2.6	29	89	4	105	25	16	32	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35012748--35012903	40	3.9	40	83	0	186	23	23	28	25	2.00
35013066--35013116	25	2.0	25	85	7	68	29	7	33	29	1.85
35016333--35016461	42	3.1	42	75	21	128	33	10	27	28	1.89
35016314--35016752	43	10.0	46	84	12	552	32	10	28	28	1.89
35016314--35016757	134	3.4	132	84	12	541	32	10	28	28	1.90
35016314--35016757	177	2.5	175	86	8	593	32	10	28	28	1.90
35016917--35016985	35	2.0	35	88	0	102	23	20	28	27	1.99
35018939--35018977	20	1.9	21	89	5	62	38	35	2	23	1.68
35034802--35034907	36	2.9	37	91	4	171	25	29	19	25	1.99
35035117--35035637	96	5.5	98	93	4	854	26	30	11	31	1.92
35035117--35035637	290	1.8	284	90	5	850	26	30	11	31	1.92
35037813--35037989	84	2.1	84	96	2	329	26	28	8	36	1.86
35039754--35040101	40	8.8	40	91	1	542	25	29	21	22	1.99
35039754--35040101	158	2.2	158	91	1	563	25	29	21	22	1.99
35039754--35040101	118	2.9	118	91	2	554	25	29	21	22	1.99
35041353--35041498	37	3.9	37	94	0	238	25	30	19	23	1.98
35041707--35042188	47	10.1	47	88	4	694	26	31	12	30	1.92
35041707--35042166	244	1.9	241	92	1	776	26	30	12	30	1.93
35044377--35044555	85	2.1	85	98	0	349	26	27	8	37	1.85
35045385--35045448	31	2.1	31	84	0	83	26	20	15	37	1.92
35045661--35045831	24	7.2	24	89	2	256	27	21	21	29	1.98
35045663--35045831	47	3.6	47	91	1	275	27	20	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35045661--35045832	71	2.4	72	89	3	269	27	20	21	30	1.98
35045881--35045947	20	3.3	20	93	0	116	32	20	11	34	1.90
35045881--35045936	11	5.5	11	71	16	57	32	19	12	35	1.89
35045984--35046031	25	1.9	25	82	0	60	27	12	25	35	1.92
35054592--35054663	36	2.0	36	94	0	126	34	20	23	20	1.96
35061200--35061371	93	1.8	93	92	0	290	27	29	20	21	1.98
35061192--35061367	46	3.8	46	78	10	196	28	28	20	21	1.98
35061243--35061386	46	3.1	46	72	14	134	29	29	19	21	1.98
35062980--35063012	13	2.5	13	100	0	66	39	0	15	45	1.46
35063769--35063848	15	5.4	15	76	7	74	60	11	17	11	1.59
35063780--35063857	15	5.2	15	72	9	52	57	12	16	12	1.65
35066596--35066770	46	3.8	45	78	11	194	29	26	20	24	1.99
35066604--35066775	93	1.8	93	91	4	285	28	27	20	23	1.99
35066647--35066790	46	3.1	46	72	14	134	29	27	20	23	1.99
35068109--35068345	27	8.8	27	92	3	361	43	25	15	16	1.87
35074894--35074971	40	2.0	39	87	7	113	33	28	21	16	1.95
35074920--35075126	39	5.3	39	85	2	274	30	27	22	19	1.98
35077877--35078061	40	4.6	39	83	5	194	24	21	27	25	1.99
35077877--35078061	79	2.3	81	82	7	218	24	21	27	25	1.99
35077930--35078094	79	2.1	79	80	6	183	26	20	27	25	1.99
35082253--35082278	13	2.0	13	100	0	52	38	23	0	38	1.55
35086121--35086292	93	1.8	93	96	0	317	27	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35086114--35086289	46	3.8	46	79	12	216	28	29	21	20	1.98
35096423--35096639	39	5.5	39	86	3	285	29	28	22	20	1.98
35101048--35101073	11	2.4	11	100	0	52	26	0	7	65	1.20
35101580--35101823	50	4.9	50	79	3	260	27	17	28	25	1.98
35105231--35105282	24	2.2	24	96	0	95	32	9	15	42	1.79
35107509--35107538	16	1.9	15	93	6	51	50	20	3	26	1.64
35120204--35120299	34	2.9	32	77	10	95	28	25	21	25	1.99
35120547--35120677	65	2.0	65	93	0	226	41	17	15	25	1.89
35121733--35121772	21	1.9	21	85	10	55	60	5	15	20	1.53
35122280--35122461	40	4.6	40	87	2	242	23	20	26	29	1.99
35127083--35127224	40	3.6	40	83	2	162	25	20	25	28	1.99
35132297--35132436	37	3.8	37	97	0	253	24	32	20	22	1.97
35132606--35133060	48	9.5	48	98	0	829	28	29	8	33	1.87
35139842--35140088	27	9.1	27	85	2	318	27	21	9	41	1.84
35139842--35140088	81	3.0	80	87	2	359	27	21	9	41	1.84
35140091--35140286	27	7.2	28	82	5	208	36	15	19	28	1.93
35140093--35140285	54	3.6	54	83	3	237	35	16	19	28	1.93
35140101--35140261	81	2.0	81	87	2	234	36	18	18	26	1.94
35140101--35140286	81	2.3	81	83	1	230	36	16	19	27	1.94
35140487--35140569	27	3.1	26	87	5	112	19	21	21	37	1.94
35140657--35140715	22	2.7	22	81	0	64	20	25	22	32	1.98
35140880--35140946	27	2.5	27	85	4	82	20	25	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35141096--35141305	6	34.8	6	78	15	220	20	16	13	49	1.80
35141071--35141305	30	7.4	30	77	15	188	20	17	13	48	1.80
35141108--35141305	30	6.6	30	87	8	260	20	16	13	48	1.80
35147756--35147786	14	2.2	14	94	0	53	32	32	25	9	1.88
35153855--35153888	16	2.1	16	88	5	50	8	0	14	76	1.01
35161643--35161769	50	2.5	50	82	2	148	31	17	30	20	1.95
35161740--35161899	43	3.7	43	76	9	146	26	15	26	31	1.95
35161740--35161900	85	1.9	87	80	10	195	26	14	26	31	1.95
35168680--35168864	79	2.3	82	83	7	229	25	27	22	24	2.00
35168661--35168864	40	5.1	40	81	8	229	25	27	22	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253