genome.fa.s4.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  105  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32734098--32734239	37	3.8	37	92	0	230	24	16	31	26	1.97
32741780--32741956	73	2.3	75	86	9	236	24	28	20	25	1.99
32741752--32741956	113	1.8	114	86	5	299	24	28	20	25	1.99
32741752--32742009	40	6.7	40	82	10	295	24	28	21	25	1.99
32750344--32750668	47	6.7	47	90	4	497	29	28	7	33	1.85
32750344--32750668	96	3.4	96	89	4	505	29	28	7	33	1.85
32750344--32750668	147	2.2	143	93	2	560	29	28	7	33	1.85
32754164--32754342	85	2.1	85	97	0	340	25	27	8	37	1.86
32755116--32755337	40	5.6	40	81	8	256	25	27	21	25	1.99
32755118--32755340	119	1.9	120	83	6	292	26	27	21	25	1.99
32760557--32760601	12	3.7	12	91	5	72	80	2	6	11	0.99
32760557--32760605	13	3.8	13	94	2	82	75	2	8	14	1.12
32762827--32762868	17	2.4	18	80	7	52	57	4	23	14	1.56
32768961--32769000	21	2.0	21	85	5	55	15	35	25	25	1.94
32777778--32777819	22	2.0	21	81	13	50	47	26	11	14	1.78
32778419--32778451	12	2.7	13	90	9	52	6	21	0	72	1.05
32779461--32779507	17	2.7	18	83	3	69	17	0	4	78	0.90
32779461--32779508	16	2.7	18	78	12	55	18	0	4	77	0.93
32781374--32781493	46	2.7	44	84	8	152	25	18	30	25	1.98
32781705--32781757	24	2.2	25	96	3	99	18	16	20	43	1.88
32786992--32787063	30	2.4	31	81	11	87	13	23	1	61	1.41
32787137--32787200	16	4.2	14	77	16	65	1	18	3	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32788115--32788162	13	3.6	13	86	13	71	12	6	6	75	1.19
32788114--32788162	14	3.6	14	86	13	75	12	6	6	75	1.17
32791671--32791701	15	2.0	16	93	6	55	38	6	3	51	1.44
32794518--32794572	18	3.0	18	84	5	74	56	1	30	10	1.44
32794518--32794571	19	2.9	19	88	2	74	57	1	31	9	1.41
32794612--32794648	18	2.1	18	89	0	56	45	0	40	13	1.43
32795310--32795353	22	2.0	22	90	0	70	43	34	2	20	1.64
32795263--32795339	14	5.4	14	70	16	52	40	36	1	22	1.62
32795284--32795366	36	2.3	36	79	6	89	44	33	1	20	1.59
32795679--32795998	40	8.1	40	73	10	246	27	21	18	31	1.97
32799528--32799639	43	2.6	42	75	10	102	25	18	24	32	1.97
32800871--32800905	17	2.1	17	88	0	52	40	5	11	42	1.65
32816978--32817156	55	3.3	54	79	8	177	24	23	16	35	1.95
32816978--32817163	54	3.5	53	77	10	198	24	23	16	36	1.94
32817142--32817263	47	2.6	47	89	2	183	25	21	14	38	1.92
32817400--32817486	44	2.0	44	84	4	113	22	26	13	36	1.92
32818758--32818797	19	2.1	19	85	0	53	25	35	17	22	1.95
32820450--32820481	11	2.8	12	95	4	57	75	6	3	15	1.14
32820449--32820500	11	5.0	10	83	4	50	78	3	3	13	1.02
32825716--32825755	19	2.1	19	85	0	53	25	35	17	22	1.95
32828707--32828838	50	2.6	51	86	3	194	37	12	15	34	1.85
32831069--32831188	56	2.1	56	87	0	168	27	18	26	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32834930--32835124	27	7.2	27	86	0	273	40	5	23	30	1.77
32834939--32835297	27	13.3	27	83	3	222	35	6	22	35	1.80
32834929--32835124	81	2.4	81	94	0	347	40	5	22	30	1.77
32834930--32835151	54	4.1	54	81	3	250	39	5	23	31	1.78
32834929--32835151	81	2.8	81	88	4	333	39	5	23	31	1.77
32839040--32839217	45	4.0	45	96	0	302	27	29	21	21	1.99
32841677--32841881	27	7.6	27	86	3	259	30	27	15	26	1.96
32849895--32849973	29	2.7	29	86	5	106	27	32	15	24	1.95
32855313--32855494	40	4.6	40	90	2	260	28	26	21	23	1.99
32858419--32858571	67	2.3	67	97	0	288	31	17	31	19	1.95
32869177--32869230	21	2.6	21	88	5	74	22	20	27	29	1.98
32869216--32869481	84	3.2	83	89	3	399	23	15	30	30	1.95
32869120--32869313	105	1.8	105	90	2	309	22	17	30	30	1.96
32869450--32869497	21	2.3	21	85	7	62	16	20	31	31	1.95
32869384--32870313	105	8.9	103	76	10	741	23	17	27	31	1.97
32869555--32869608	21	2.6	21	85	11	67	24	20	27	27	1.99
32869657--32869734	21	3.7	21	68	13	70	24	15	25	34	1.95
32869573--32869814	126	1.9	126	89	5	373	24	15	28	30	1.95
32869657--32869738	42	2.0	42	92	0	137	25	15	24	34	1.95
32869702--32869890	84	2.3	85	82	5	224	24	17	26	31	1.97
32869976--32870022	21	2.2	21	85	7	60	19	21	27	31	1.97
32869399--32870521	210	5.5	207	72	12	657	24	17	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32869300--32870102	420	1.9	420	86	4	1138	24	16	28	30	1.97
32869894--32870497	189	3.1	188	74	13	588	23	17	26	32	1.97
32870080--32870127	21	2.3	21	85	7	62	16	20	29	33	1.95
32870209--32870397	84	2.2	84	85	5	240	24	20	24	31	1.98
32870371--32870418	21	2.3	21	85	7	62	18	22	27	31	1.97
32870287--32870517	105	2.2	105	87	0	318	22	18	26	32	1.97
32870480--32870549	21	3.3	21	76	11	72	20	22	28	28	1.98
32877495--32877669	40	4.4	40	92	0	296	28	28	19	24	1.98
32887677--32887870	47	4.1	47	90	0	289	32	10	29	26	1.90
32887706--32887777	22	3.1	22	64	24	58	33	13	29	23	1.93
32887751--32887826	23	3.2	25	62	24	63	28	13	34	23	1.92
32887841--32888024	98	1.9	96	93	4	316	35	7	26	30	1.83
32887840--32888024	48	3.8	48	90	5	309	35	7	26	30	1.83
32888171--32888279	37	2.9	37	95	0	191	22	19	31	26	1.98
32889772--32889946	40	4.4	40	97	0	332	28	30	19	21	1.98
32891079--32891117	18	2.2	18	100	0	78	30	15	25	28	1.96
32897798--32898077	49	5.7	48	81	7	300	26	28	19	26	1.99
32897805--32898077	147	1.9	147	84	9	369	26	28	18	26	1.98
32906220--32906254	13	2.6	14	86	13	56	17	2	5	74	1.14
32911493--32911586	40	2.3	40	81	3	118	31	28	14	24	1.95
32913367--32913406	19	2.1	19	95	0	71	17	17	30	35	1.93
32914530--32914575	20	2.3	20	84	0	56	23	19	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32914522--32914595	30	2.5	30	84	8	80	22	20	18	37	1.94
32917331--32917438	6	17.7	6	68	6	65	70	3	19	6	1.25
32917335--32917393	18	3.3	18	80	0	73	71	6	16	5	1.26
32917400--32917456	14	4.2	13	79	16	62	71	0	17	10	1.12
32917399--32917456	27	2.1	27	87	12	84	70	0	18	10	1.15
32917453--32917515	33	1.9	33	84	12	85	53	6	26	12	1.62
32919297--32919342	20	2.3	20	84	0	56	23	19	17	39	1.92
32919299--32919362	30	2.1	30	85	5	85	21	20	17	40	1.91
32921865--32921900	17	2.1	18	89	5	56	41	16	8	33	1.78
32924941--32925178	131	1.8	130	91	0	395	22	19	31	26	1.98
32924934--32925185	43	5.8	43	91	1	380	23	19	31	25	1.98
32925260--32925340	31	2.5	31	80	4	81	61	18	3	16	1.48
32931263--32931533	9	29.6	9	76	8	179	38	1	12	47	1.49
32931263--32931523	18	14.2	18	78	7	204	37	1	13	48	1.49
32931316--32931533	27	7.9	27	80	8	213	38	1	13	47	1.51
32931239--32931460	114	1.9	114	86	3	313	38	0	12	47	1.48
32931637--32931692	15	3.8	15	76	21	64	51	0	1	46	1.11
32931901--32932606	290	2.4	288	98	0	1358	36	12	13	36	1.84
32937561--32937685	45	2.8	44	81	12	130	18	24	26	31	1.98
32943191--32943217	12	2.2	12	100	0	54	18	0	40	40	1.51
32959107--32959331	40	5.7	40	83	7	237	24	28	22	24	2.00
32959107--32959331	79	2.8	78	78	11	233	24	28	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32967167--32967191	11	2.3	11	100	0	50	16	28	8	48	1.74
32971565--32971687	61	2.0	61	98	0	237	43	4	24	27	1.72
32973573--32973646	29	2.6	29	82	4	87	25	32	16	25	1.96
32979607--32979670	30	2.1	30	91	5	103	15	15	35	32	1.90
32979773--32979825	22	2.4	22	100	0	106	15	41	28	15	1.87
32988326--32988385	27	2.3	26	85	2	75	33	20	23	23	1.97
32988425--32988475	27	1.9	26	84	4	66	35	17	27	19	1.94
32993703--32993809	28	3.8	28	87	0	133	28	26	11	33	1.91
32997769--32997895	50	2.5	50	87	1	182	33	17	22	26	1.96
32997873--32998019	31	4.7	31	89	3	233	26	19	27	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253