genome.fa.s4.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  152  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48847708--48847781	29	2.6	29	86	4	96	25	31	16	27	1.96
48868952--48868992	20	2.0	21	86	13	59	24	21	0	53	1.46
48869938--48870015	30	2.6	30	85	4	95	28	33	23	15	1.95
48892363--48892535	46	3.7	46	75	13	174	21	19	28	31	1.97
48902397--48902462	31	2.1	31	100	0	132	34	25	15	24	1.94
48904893--48904944	26	2.0	26	96	0	95	28	34	23	13	1.92
48904995--48905045	26	2.0	26	96	0	93	29	35	23	11	1.90
48904862--48905123	101	2.6	102	92	3	438	30	31	19	17	1.96
48905452--48905515	30	2.2	29	81	10	76	29	28	6	35	1.82
48905459--48905515	30	1.9	30	85	3	80	29	24	7	38	1.82
48912363--48912414	26	2.0	26	96	0	95	28	34	23	13	1.92
48912464--48912514	26	2.0	26	96	0	93	29	35	23	11	1.90
48912331--48912593	100	2.6	103	91	4	426	30	30	19	19	1.96
48912926--48912982	30	1.9	30	85	3	80	29	24	7	38	1.82
48919237--48919362	47	2.7	44	83	13	148	29	17	30	23	1.97
48920248--48920356	37	2.9	37	93	0	173	27	30	18	23	1.98
48920563--48921094	47	11.1	47	87	6	735	26	30	12	30	1.93
48920678--48920751	23	3.2	23	62	27	57	28	32	9	29	1.88
48920563--48921094	98	5.5	95	88	5	702	26	30	12	30	1.93
48920563--48921094	145	3.7	144	89	6	792	26	30	12	30	1.93
48923274--48923452	85	2.1	85	98	0	349	26	27	8	37	1.85
48924900--48925008	57	1.9	58	86	1	157	28	27	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48924907--48925005	29	3.5	28	72	9	83	30	25	20	24	1.99
48925220--48925609	40	9.8	40	92	1	622	25	29	21	23	1.99
48926864--48927007	37	3.9	37	94	1	245	25	31	18	24	1.98
48926864--48927007	73	2.0	74	92	1	245	25	31	18	24	1.98
48927215--48927747	47	11.1	47	87	5	744	26	30	12	30	1.93
48927330--48927404	23	3.2	23	62	23	57	28	32	10	29	1.90
48927215--48927747	98	5.5	95	89	5	711	26	30	12	30	1.93
48927215--48927747	145	3.7	144	90	5	801	26	30	12	30	1.93
48929929--48930107	85	2.1	85	98	0	349	26	27	8	37	1.85
48942969--48943149	40	4.6	40	82	4	197	24	26	24	24	2.00
48942969--48943149	81	2.3	79	83	2	211	24	26	24	24	2.00
48944336--48944410	37	2.0	37	97	2	141	32	24	13	30	1.93
48946350--48946458	37	2.9	37	85	5	157	26	11	48	12	1.76
48947395--48947468	7	10.3	7	73	5	58	37	39	0	22	1.55
48947395--48947468	22	3.4	21	78	9	69	37	39	0	22	1.55
48947435--48947478	21	2.1	21	87	8	63	36	38	0	25	1.56
48947560--48947611	7	7.4	7	80	0	50	50	25	0	25	1.50
48947769--48947865	41	2.4	41	87	0	149	19	18	22	39	1.93
48947769--48947895	41	3.1	40	81	5	139	18	18	22	39	1.92
48948043--48948074	6	5.3	6	100	0	64	31	0	0	68	0.90
48948953--48949013	4	15.2	4	100	0	122	24	0	24	50	1.49
48951510--48951558	15	3.2	15	85	5	71	57	0	2	40	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48958116--48958291	63	2.8	63	82	5	212	25	24	22	28	1.99
48960927--48961007	30	2.7	30	73	7	83	25	25	22	25	2.00
48961201--48961232	12	2.4	14	90	10	50	40	0	9	50	1.35
48969483--48969564	24	3.4	24	71	19	71	67	1	29	2	1.11
48971143--48971190	25	2.0	24	84	12	62	45	8	6	39	1.59
48971219--48971290	30	2.4	29	84	4	90	56	8	4	30	1.48
48971247--48971306	18	3.2	19	81	11	61	60	13	0	26	1.34
48971672--48971751	3	27.0	3	85	7	110	63	0	1	35	1.02
48979947--48980119	93	1.9	93	91	0	283	28	30	20	20	1.98
48979940--48980115	46	3.8	46	75	7	185	29	29	20	20	1.98
48979992--48980134	46	3.1	45	72	11	119	30	28	19	21	1.98
48987797--48987826	15	2.0	15	93	0	51	53	23	6	16	1.66
48993842--48993923	38	2.2	38	97	0	155	34	25	3	36	1.74
48996041--48996089	23	2.1	23	92	0	80	18	14	20	46	1.83
48999074--48999121	24	2.0	25	84	12	64	41	16	12	29	1.85
49007750--49008024	49	5.8	49	73	14	193	21	29	20	27	1.98
49008373--49008443	30	2.4	30	95	0	124	38	23	8	29	1.85
49010144--49010316	47	3.8	44	76	15	145	20	30	21	27	1.98
49010145--49010316	92	1.8	93	83	4	231	20	30	21	27	1.98
49012501--49012531	15	2.1	15	100	0	62	61	6	19	12	1.53
49013977--49014134	40	4.0	40	93	0	262	22	19	29	29	1.98
49013992--49014152	80	2.0	80	84	2	207	22	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49021423--49021607	79	2.3	82	84	7	238	25	27	22	24	2.00
49021404--49021607	40	5.1	40	82	8	238	25	27	22	25	2.00
49029376--49029560	79	2.3	82	84	7	238	25	27	22	24	2.00
49029357--49029560	40	5.1	40	82	8	238	25	27	22	25	2.00
49033028--49033185	40	4.0	40	89	0	235	22	17	29	30	1.97
49033043--49033211	80	2.1	80	83	0	203	22	20	28	28	1.98
49034730--49034787	30	1.9	30	82	6	73	24	31	25	18	1.98
49042635--49042695	24	2.6	23	78	17	70	26	8	1	63	1.31
49042665--49042708	16	2.8	17	83	16	51	27	9	0	63	1.24
49045099--49045139	20	2.0	20	100	0	82	21	24	9	43	1.83
49053192--49053268	37	2.1	37	90	0	118	44	10	5	40	1.61
49054139--49054201	25	2.5	25	100	0	126	38	0	0	61	0.96
49057957--49057990	17	2.0	17	100	0	68	41	17	5	35	1.74
49061652--49061698	23	2.1	23	92	4	78	21	29	8	40	1.83
49065105--49065283	85	2.1	85	97	0	340	38	7	26	26	1.84
49066442--49066628	78	2.4	82	83	8	226	24	22	27	25	2.00
49066447--49066630	40	4.7	40	83	8	225	23	22	28	25	2.00
49066500--49066653	80	2.0	77	83	8	195	25	21	27	25	1.99
49073231--49073360	38	3.4	37	81	9	102	26	27	20	25	1.99
49073259--49073405	38	3.8	39	80	7	156	25	26	20	27	1.99
49074570--49074749	85	2.1	87	94	3	321	26	26	7	38	1.83
49127556--49127706	28	5.4	28	94	1	241	27	11	27	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49135536--49135686	28	5.4	28	92	1	232	27	11	26	33	1.92
49137768--49137797	15	2.0	15	93	0	51	33	16	26	23	1.96
49138690--49138729	17	2.3	18	95	4	73	35	0	10	55	1.34
49141276--49141517	47	5.1	47	86	2	272	34	9	29	26	1.88
49141350--49141425	23	3.2	25	62	24	63	28	13	34	23	1.92
49141299--49141607	94	3.2	94	82	7	286	34	9	28	27	1.88
49141439--49141623	48	3.8	48	87	5	282	36	7	27	29	1.83
49141440--49141623	98	1.9	96	89	4	289	36	7	27	29	1.83
49141770--49141914	37	3.9	37	89	0	209	24	20	30	24	1.99
49143187--49143533	160	2.2	160	97	0	649	24	21	27	26	2.00
49143182--49143533	40	8.8	40	84	0	452	24	21	27	26	1.99
49147570--49147811	47	5.1	47	87	2	281	34	9	29	26	1.88
49147734--49147917	98	1.9	96	88	4	280	36	7	26	28	1.84
49147733--49147917	48	3.8	49	85	7	261	36	7	26	29	1.84
49148066--49148208	37	3.9	37	88	0	196	24	19	31	24	1.98
49150439--49150490	27	1.9	27	88	0	77	23	25	11	40	1.88
49150586--49150701	31	3.8	30	81	5	142	30	26	15	27	1.96
49156342--49156449	26	4.2	26	93	0	189	36	24	7	32	1.83
49163279--49163384	40	2.7	41	86	5	146	23	25	28	22	1.99
49164252--49164355	33	3.2	33	86	5	140	25	22	14	37	1.92
49165274--49165308	12	3.0	12	87	8	54	34	17	0	48	1.47
49167312--49167339	14	2.0	14	100	0	56	14	0	0	85	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49167941--49167985	20	2.3	19	81	11	54	46	0	13	40	1.43
49170314--49170432	45	2.6	45	85	5	143	30	27	19	22	1.98
49170294--49170446	45	3.5	43	77	13	141	32	26	17	23	1.97
49176842--49177045	40	5.1	40	92	0	329	26	26	22	24	2.00
49178350--49178383	13	2.5	13	90	9	50	47	14	2	35	1.60
49181253--49181393	40	3.5	40	85	5	160	25	25	26	22	2.00
49183326--49183509	39	4.7	40	84	7	225	25	27	22	24	2.00
49183326--49183509	79	2.3	81	83	8	227	25	27	22	24	2.00
49191185--49191369	79	2.3	81	82	9	220	25	27	22	25	2.00
49191185--49191369	40	4.7	40	78	12	202	25	27	22	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253