genome.fa.s4.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  188  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61404980--61405104	46	2.7	44	78	10	133	25	28	16	29	1.96
61420287--61420364	41	1.9	41	86	5	113	17	21	41	19	1.91
61429060--61429098	21	1.9	21	89	5	62	51	2	0	46	1.14
61442221--61442339	44	2.7	44	84	3	141	27	22	23	26	2.00
61442225--61442387	89	1.8	89	85	2	229	28	19	25	26	1.99
61442225--61442387	45	3.7	43	78	8	132	28	19	25	26	1.99
61442273--61442425	45	3.4	45	82	4	150	27	18	27	26	1.98
61444027--61444080	21	2.5	22	85	14	76	29	7	0	62	1.22
61443999--61444080	21	4.6	18	70	24	57	28	9	0	62	1.27
61453027--61453146	44	2.7	44	81	3	134	25	22	25	26	2.00
61453074--61453187	44	2.6	44	81	6	133	25	20	25	28	1.99
61454968--61455021	21	2.5	22	85	14	76	29	7	0	62	1.22
61454940--61455021	21	4.6	18	70	24	57	28	9	0	62	1.27
61456623--61456686	32	2.0	32	96	0	119	34	14	18	32	1.91
61460489--61460513	8	3.1	8	100	0	50	76	0	0	24	0.80
61464810--61464840	9	3.4	9	95	0	53	41	6	0	51	1.27
61466447--61466471	11	2.3	11	100	0	50	32	0	0	68	0.90
61471254--61471534	50	5.6	50	77	0	265	22	15	25	36	1.93
61471248--61471502	100	2.5	100	84	1	314	23	16	23	36	1.94
61471411--61471521	25	4.4	25	68	0	69	24	15	23	36	1.93
61489774--61489808	18	1.9	18	94	0	61	34	14	11	40	1.82
61489810--61489985	92	1.9	92	97	0	334	36	13	17	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61492137--61494002	622	3.0	621	95	0	3283	36	18	8	36	1.82
61501089--61501209	57	2.1	57	83	7	147	47	5	19	27	1.71
61501681--61501721	18	2.2	20	87	12	61	2	24	0	73	0.96
61508039--61508083	16	2.8	16	83	6	56	24	2	4	68	1.19
61508955--61508988	17	2.1	16	88	5	50	41	2	11	44	1.56
61519538--61519606	24	2.8	25	80	14	72	33	0	4	62	1.15
61532454--61532531	34	2.3	34	82	6	88	47	23	6	23	1.74
61533674--61533726	28	1.9	27	88	3	79	32	22	13	32	1.92
61535912--61536096	40	4.7	39	85	2	219	25	27	23	24	2.00
61535905--61536099	79	2.5	80	81	7	236	25	26	22	25	2.00
61542345--61542398	28	1.9	28	85	14	76	62	3	1	31	1.23
61542489--61542533	21	2.1	21	84	8	56	44	0	0	55	0.99
61549582--61549668	29	3.0	28	79	3	93	33	4	13	48	1.63
61554203--61554344	34	4.2	33	77	7	124	30	11	14	42	1.81
61554216--61554357	68	2.1	68	82	2	169	32	11	14	40	1.83
61554492--61554662	44	3.8	44	75	3	155	23	15	20	39	1.91
61558174--61558208	18	1.9	18	94	0	61	31	14	11	42	1.81
61571471--61571517	3	15.7	3	100	0	94	68	0	0	31	0.90
61572513--61572572	28	2.2	27	82	8	68	25	6	0	68	1.14
61580835--61581022	49	3.8	49	77	2	205	27	18	26	28	1.98
61580830--61581017	100	1.9	100	90	0	304	26	19	26	28	1.99
61582984--61583154	43	4.0	44	79	5	197	28	14	24	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61584634--61584678	22	2.0	22	91	0	72	24	6	40	28	1.80
61589331--61589374	25	1.9	22	82	17	54	18	9	20	52	1.72
61589256--61589420	68	2.4	68	85	6	210	25	6	21	46	1.75
61590471--61590548	34	2.3	34	84	4	95	32	15	20	32	1.94
61591218--61591265	25	1.9	25	82	0	60	43	18	12	25	1.85
61592434--61592510	40	1.9	40	86	0	109	35	32	15	16	1.91
61593974--61594012	14	2.8	14	92	0	60	23	7	35	33	1.83
61594328--61594403	21	3.6	21	78	0	71	17	32	35	14	1.90
61599234--61599291	25	2.6	22	78	19	50	22	1	0	75	0.89
61599234--61599289	17	3.4	16	85	11	62	21	1	0	76	0.87
61614629--61614681	13	4.1	13	100	0	106	15	32	37	15	1.88
61617746--61617792	21	2.2	21	88	0	67	44	2	12	40	1.54
61622310--61622471	69	2.3	69	90	0	243	29	27	14	29	1.95
61632503--61632541	11	3.6	11	79	6	53	2	30	56	10	1.46
61632492--61632540	21	2.3	21	92	0	80	8	32	51	8	1.61
61632694--61632753	26	2.4	24	83	8	75	68	3	0	28	1.05
61632724--61632782	21	2.8	22	85	7	70	69	6	0	23	1.12
61632884--61632913	15	1.9	16	93	6	53	0	36	60	3	1.14
61635678--61635709	12	2.7	12	90	0	55	34	40	12	12	1.81
61640800--61640893	40	2.4	40	76	3	111	30	37	13	18	1.90
61642175--61642234	28	2.1	28	100	0	120	20	23	20	36	1.95
61642598--61642705	26	4.2	26	96	0	189	32	7	24	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61644327--61644413	27	3.2	27	82	9	115	18	24	24	33	1.97
61651029--61651124	40	2.5	40	81	3	115	38	34	12	14	1.84
61658705--61658925	108	2.0	110	91	6	360	31	12	4	52	1.57
61661809--61661841	17	1.9	17	100	0	66	48	0	18	33	1.48
61666660--61666685	12	2.2	12	100	0	52	42	7	0	50	1.31
61670309--61670354	20	2.3	20	84	0	56	13	28	17	41	1.86
61679561--61679613	3	17.7	3	96	0	97	66	0	33	0	0.92
61680168--61680216	25	2.0	25	88	8	73	26	18	4	51	1.64
61685772--61685814	22	2.0	22	86	8	63	18	27	4	48	1.68
61691743--61691784	12	3.3	13	83	9	52	73	0	9	16	1.08
61698073--61698220	12	12.5	12	70	11	72	27	43	12	15	1.83
61698171--61698218	23	2.0	24	92	8	80	33	45	8	12	1.72
61702777--61702883	45	2.4	45	85	3	144	42	18	17	21	1.90
61702861--61702885	12	2.1	12	100	0	50	40	20	24	16	1.91
61703088--61703176	40	2.2	40	84	2	108	38	14	10	37	1.80
61703953--61703991	5	7.6	5	94	5	69	61	0	0	38	0.96
61707911--61708085	46	3.8	46	76	15	189	30	29	19	20	1.97
61707918--61708089	93	1.8	93	92	2	292	29	29	19	20	1.97
61712288--61712394	45	2.4	45	92	3	171	41	18	18	21	1.91
61712607--61712684	40	2.0	40	84	0	102	39	16	7	35	1.78
61731314--61731441	46	2.8	46	89	3	177	19	19	28	32	1.96
61738096--61738193	33	2.9	33	84	7	108	36	22	10	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61738412--61738567	41	3.8	41	87	6	217	27	22	19	30	1.98
61742678--61742784	43	2.5	43	87	1	153	34	25	14	26	1.93
61749616--61749892	137	2.0	137	92	0	464	46	9	10	33	1.70
61749810--61749940	55	2.4	54	78	8	131	46	5	9	38	1.59
61750228--61750254	14	1.9	14	100	0	54	44	7	14	33	1.73
61750404--61750470	34	1.9	35	87	3	100	34	8	11	44	1.73
61750623--61750674	26	2.2	24	78	21	58	59	5	0	34	1.21
61753611--61753672	26	2.4	25	76	10	63	43	1	1	53	1.20
61757610--61757653	22	2.0	22	95	0	79	25	0	20	54	1.45
61760389--61760441	27	2.0	27	100	0	106	54	15	11	18	1.70
61769021--61769083	25	2.5	25	86	2	90	38	7	0	53	1.30
61770951--61770975	2	12.5	2	100	0	50	52	0	0	48	1.00
61772452--61772491	6	6.7	6	100	0	80	15	32	17	35	1.91
61773705--61773738	18	1.9	18	88	5	52	44	26	11	17	1.83
61784114--61784211	40	2.4	40	72	14	94	41	7	1	50	1.37
61784486--61784564	41	1.9	41	100	0	158	39	25	12	22	1.89
61784769--61784809	22	1.9	21	85	5	55	56	7	0	36	1.27
61787315--61787356	20	2.0	21	90	4	68	42	0	2	54	1.13
61788453--61788485	3	11.0	3	100	0	66	66	0	0	33	0.92
61788613--61788649	13	2.8	13	87	4	56	54	0	0	45	1.00
61789713--61789775	31	2.0	31	96	0	117	36	12	15	34	1.86
61792279--61792491	40	5.3	40	86	5	265	26	28	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61795762--61795882	46	2.6	46	84	2	143	29	16	28	24	1.97
61795804--61796023	49	4.6	47	75	10	162	26	18	29	25	1.98
61796825--61796851	13	2.1	13	100	0	54	7	22	29	40	1.81
61798437--61798464	13	2.2	13	100	0	56	28	17	7	46	1.75
61811427--61811483	24	2.3	24	87	6	78	33	8	0	57	1.29
61811438--61811486	24	2.0	24	100	0	98	28	12	0	59	1.34
61812014--61812128	29	3.9	30	74	7	94	25	19	9	46	1.80
61812043--61812152	58	1.9	58	81	7	134	23	19	8	49	1.75
61813187--61813260	17	4.2	17	71	21	53	31	1	18	48	1.57
61818922--61818987	33	2.0	33	100	0	132	39	15	21	24	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253