genome.fa.s4.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  144  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46245130--46245399	15	16.9	15	69	21	99	62	1	2	32	1.19
46245181--46245341	7	23.1	7	71	20	99	61	1	1	36	1.12
46245184--46245399	14	14.3	16	68	25	102	62	1	1	33	1.14
46245137--46245332	45	4.3	44	76	18	156	62	1	2	33	1.18
46245159--46245332	94	1.9	94	84	9	239	62	1	1	34	1.16
46245091--46245348	125	2.1	126	81	12	313	61	2	3	33	1.24
46247051--46247527	120	4.0	119	92	0	767	32	18	15	33	1.92
46247051--46247527	239	2.0	239	91	1	778	32	18	15	33	1.92
46259480--46259519	19	2.1	19	86	9	55	57	0	7	35	1.27
46259716--46259924	21	10.1	20	65	23	76	62	1	2	33	1.17
46259708--46259925	15	14.0	15	67	21	78	61	1	2	33	1.18
46259759--46259918	7	24.1	7	69	23	98	61	1	1	36	1.12
46259756--46259913	22	6.9	22	73	20	121	61	1	1	36	1.12
46259759--46259925	51	3.3	51	78	13	157	62	1	1	35	1.11
46259758--46259918	29	5.3	28	73	19	105	61	1	1	36	1.12
46259739--46259925	11	16.5	11	69	19	59	62	1	1	34	1.14
46259740--46259875	24	5.7	25	71	20	87	62	2	1	33	1.16
46267026--46267203	40	4.5	40	84	3	209	25	29	23	22	1.99
46269109--46269143	15	2.3	15	90	9	54	68	17	0	14	1.21
46271969--46272048	42	1.9	42	92	0	133	31	13	10	45	1.77
46281718--46281851	46	2.9	45	81	5	153	27	20	26	25	1.99
46281820--46282041	49	4.7	49	74	12	176	25	19	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46283262--46283301	21	2.0	21	90	5	64	12	40	27	20	1.88
46290352--46290444	48	1.9	48	100	0	186	35	19	19	25	1.95
46293985--46294042	18	3.2	18	76	9	55	65	5	1	27	1.23
46299597--46299714	59	2.0	59	98	0	227	38	16	16	28	1.91
46305347--46305378	6	5.5	6	92	7	57	0	0	31	68	0.90
46305347--46305378	11	2.8	12	95	4	57	0	0	31	68	0.90
46305413--46305447	7	4.9	7	96	3	61	14	11	0	74	1.08
46308759--46308796	20	1.9	20	88	0	58	34	13	13	39	1.83
46308906--46308973	28	2.3	29	80	12	86	60	1	5	32	1.30
46309541--46309603	25	2.5	26	78	14	71	39	1	6	52	1.37
46309676--46309733	26	2.3	26	75	3	64	51	5	8	34	1.55
46311365--46311629	107	2.5	107	82	3	286	32	19	15	32	1.93
46311421--46311672	107	2.4	107	80	4	301	35	19	14	30	1.92
46312314--46312343	15	1.9	16	93	6	53	20	3	6	70	1.25
46316086--46316124	13	3.0	13	85	11	53	66	5	2	25	1.25
46316166--46316198	13	2.4	14	90	5	50	78	0	0	21	0.75
46316647--46316694	6	8.0	6	85	0	51	20	6	0	72	1.05
46316647--46316694	12	4.0	12	80	0	60	20	6	0	72	1.05
46316982--46317075	16	5.8	16	81	7	100	20	20	0	59	1.38
46316998--46317081	5	15.6	5	74	14	60	21	20	0	58	1.40
46316982--46317075	32	2.9	32	90	3	143	20	20	0	59	1.38
46317079--46317160	43	1.9	43	85	7	114	30	6	0	63	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46317173--46317451	49	5.8	47	72	15	173	25	14	1	58	1.43
46317125--46317235	27	4.3	26	68	20	90	30	10	0	57	1.39
46317255--46317455	27	7.9	27	70	17	108	24	14	0	59	1.42
46317135--46317353	118	1.9	117	91	0	357	27	14	1	56	1.47
46317251--46317454	75	2.7	75	89	3	302	25	14	0	59	1.42
46317254--46317455	102	2.0	102	82	10	252	24	14	0	59	1.42
46323514--46323828	55	5.6	54	69	15	194	32	18	17	31	1.94
46323453--46323817	114	3.2	110	82	6	419	28	19	18	33	1.95
46323626--46323786	54	2.8	58	77	11	163	31	18	16	32	1.94
46323488--46323876	109	3.5	111	81	7	398	31	19	17	32	1.94
46324254--46324297	18	2.5	17	82	17	54	34	2	2	61	1.21
46325568--46325615	19	2.5	19	93	0	78	41	18	4	35	1.70
46333170--46333345	46	3.8	45	77	14	196	20	21	28	28	1.98
46333167--46333338	93	1.8	93	93	0	299	20	22	29	27	1.99
46346556--46346606	19	2.8	18	71	11	50	37	1	7	52	1.42
46354015--46354336	96	3.4	95	83	4	360	25	27	18	29	1.98
46354016--46354358	144	2.4	144	81	5	390	25	27	18	28	1.98
46354015--46354363	48	7.3	48	78	7	316	25	26	18	29	1.98
46361782--46362130	48	7.3	48	77	1	277	24	27	18	29	1.98
46361785--46362112	96	3.4	96	78	0	350	24	27	17	29	1.98
46365399--46365567	44	3.8	43	76	6	124	22	18	12	46	1.82
46365482--46365567	44	2.0	44	90	0	136	18	19	13	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46370115--46370165	23	2.3	22	80	6	57	7	7	9	74	1.22
46370223--46370253	12	2.7	11	90	9	53	29	0	0	70	0.87
46370372--46370405	12	2.8	12	90	0	50	76	0	0	23	0.79
46372234--46372287	27	2.0	27	85	7	74	31	0	1	66	1.02
46373725--46373916	40	4.8	40	90	2	253	26	30	21	21	1.98
46382042--46382233	40	4.8	40	90	2	253	25	30	21	21	1.99
46388642--46388858	39	5.5	39	78	12	189	25	22	25	27	2.00
46388638--46388858	38	5.6	39	80	10	222	24	22	25	26	2.00
46390054--46390102	21	2.3	22	80	19	68	28	0	0	71	0.86
46390054--46390102	20	2.4	21	83	12	66	28	0	0	71	0.86
46390042--46390105	20	3.2	19	77	18	58	26	3	0	70	1.02
46390284--46390338	19	3.0	18	79	15	60	23	9	0	67	1.19
46390473--46390506	18	1.9	18	88	5	52	41	5	0	52	1.25
46390743--46390787	23	2.0	23	86	8	65	31	2	2	64	1.18
46390888--46390934	18	2.6	18	80	19	53	36	2	0	61	1.08
46391553--46391609	26	2.2	26	87	3	78	29	3	0	66	1.08
46391582--46391615	16	2.1	16	88	0	50	41	5	0	52	1.25
46392000--46392039	18	2.2	19	86	4	55	17	5	0	77	0.94
46392113--46392156	22	2.0	22	86	8	63	27	0	2	70	0.99
46392780--46392830	19	2.7	18	79	11	57	41	1	0	56	1.10
46392967--46393046	24	3.3	23	76	11	79	37	2	0	60	1.11
46393572--46393617	20	2.3	21	85	10	62	32	8	0	58	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46393572--46393626	21	2.7	20	83	8	65	36	7	0	56	1.27
46393731--46393782	24	2.3	22	86	6	68	36	3	0	59	1.16
46393748--46393799	17	2.9	18	80	8	61	38	1	0	59	1.08
46393745--46393804	17	3.4	17	73	15	59	35	1	0	63	1.05
46394424--46394503	20	3.8	20	71	22	65	23	5	0	71	1.06
46394423--46394501	35	2.2	35	76	10	81	24	5	0	70	1.06
46394993--46395030	12	3.2	12	81	7	51	26	5	0	68	1.11
46394993--46395043	23	2.3	22	86	3	66	27	5	0	66	1.14
46395392--46395432	13	3.2	13	86	3	57	36	2	0	60	1.10
46407607--46407644	9	4.3	9	80	6	51	76	2	0	21	0.91
46407603--46407641	17	2.4	17	91	8	64	71	2	0	25	0.98
46407607--46407672	26	2.5	26	79	16	66	68	4	1	25	1.18
46413027--46413250	40	5.6	39	82	10	217	25	26	21	26	2.00
46413027--46413251	80	2.8	78	83	9	276	25	26	21	26	2.00
46414780--46414830	25	2.0	25	96	0	93	23	19	27	29	1.98
46416637--46416735	50	2.0	49	84	2	126	27	8	12	52	1.66
46421176--46421332	78	2.0	78	96	0	287	27	20	21	31	1.98
46428377--46428425	25	2.0	25	88	8	73	28	30	22	18	1.97
46430111--46430142	15	2.1	15	94	0	55	34	21	9	34	1.86
46431895--46431979	44	1.9	44	85	4	118	37	11	23	27	1.90
46432118--46432286	47	3.6	47	94	0	293	36	13	23	26	1.92
46432269--46432680	53	7.8	54	75	13	320	36	16	23	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46432259--46432621	154	2.3	156	78	14	386	36	15	23	23	1.94
46432212--46432657	208	2.1	208	94	0	775	36	16	23	23	1.94
46432476--46432680	55	3.8	54	81	8	211	35	17	24	22	1.95
46434856--46434948	47	2.0	47	100	0	186	23	25	17	33	1.96
46444207--46444239	13	2.6	13	90	4	50	39	0	12	48	1.40
46446236--46446420	79	2.3	81	80	8	209	25	28	21	24	1.99
46446217--46446420	40	5.1	40	80	8	220	25	27	21	25	1.99
46451204--46451395	24	8.0	24	89	1	269	27	21	22	28	1.99
46451445--46451511	20	3.3	20	93	0	116	32	20	11	34	1.90
46451445--46451500	11	5.5	11	71	16	57	32	19	12	35	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253