genome.fa.s4.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  138  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44182658--44182973	54	5.9	54	76	6	221	40	18	8	31	1.81
44182653--44182916	81	3.3	81	80	7	261	42	18	7	31	1.79
44183238--44183357	41	3.0	41	82	1	134	22	21	29	26	1.99
44183502--44183566	22	3.0	22	75	8	69	23	24	21	30	1.99
44183957--44184161	27	7.6	26	80	9	198	42	19	7	29	1.79
44183941--44184179	54	4.4	54	81	6	243	41	19	7	31	1.80
44183957--44184161	81	2.5	81	83	4	245	42	19	7	29	1.79
44183941--44184253	27	11.6	27	78	8	176	39	18	9	31	1.84
44184011--44184190	81	2.2	81	83	3	211	43	18	7	30	1.78
44183941--44184247	54	5.7	54	80	5	196	40	18	9	31	1.82
44184513--44184631	40	2.9	41	86	2	159	22	20	30	26	1.98
44184525--44184631	41	2.7	40	88	1	151	20	21	30	27	1.98
44184776--44184840	22	3.0	22	84	8	87	21	23	21	33	1.97
44185231--44185466	27	8.7	27	81	2	208	43	18	8	30	1.79
44185205--44185521	54	5.9	53	78	3	231	41	18	9	30	1.82
44185200--44185464	81	3.3	80	78	7	234	42	18	8	30	1.80
44185204--44185527	27	12.0	27	78	6	187	40	18	9	31	1.83
44185787--44185905	40	2.9	41	89	2	177	21	21	30	26	1.98
44185799--44185905	41	2.7	40	92	1	169	18	23	30	27	1.98
44185992--44186051	26	2.3	26	100	0	120	38	18	10	33	1.84
44186044--44186186	27	5.3	27	82	8	148	46	19	4	29	1.71
44186018--44186269	54	4.6	54	75	10	156	43	17	7	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44185992--44186275	27	10.5	27	78	8	123	42	17	8	30	1.79
44186547--44186665	40	2.9	41	85	3	143	22	22	27	26	1.99
44186551--44186665	41	2.8	39	84	3	131	22	23	27	26	2.00
44185312--44186750	760	1.9	759	93	1	2503	32	17	18	32	1.94
44186810--44186874	22	3.0	22	80	8	78	21	24	21	32	1.98
44187265--44187469	27	7.6	27	78	6	175	45	19	6	28	1.75
44187454--44187525	27	2.6	28	82	6	94	48	15	6	29	1.71
44187454--44187539	28	3.1	27	80	8	93	46	13	9	30	1.75
44187821--44187939	40	2.9	41	88	2	168	20	21	31	26	1.97
44187825--44187939	41	2.8	40	89	1	158	20	21	32	26	1.98
44188084--44188148	22	3.0	22	80	8	78	21	24	21	32	1.98
44188505--44188638	27	5.0	27	77	8	112	40	20	8	29	1.83
44188539--44188644	54	1.9	55	84	5	144	41	22	7	28	1.81
44188767--44188885	40	2.9	41	91	2	186	21	22	30	26	1.99
44188779--44188885	41	2.7	40	94	1	178	18	24	30	26	1.98
44189470--44189617	55	2.7	54	79	11	133	43	21	6	28	1.76
44189460--44189667	81	2.6	81	74	6	197	44	19	7	28	1.77
44189452--44189729	27	10.3	27	76	7	134	41	18	9	30	1.83
44189989--44190107	40	2.9	41	87	1	159	19	21	31	28	1.97
44190252--44190316	22	3.0	22	77	8	69	21	23	23	32	1.98
44190707--44190910	27	7.6	27	81	6	209	43	19	6	30	1.77
44190707--44190910	81	2.5	80	80	3	248	43	19	6	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44190680--44191001	27	12.0	27	78	8	180	40	18	8	31	1.81
44190681--44190995	54	5.9	53	77	5	249	41	19	7	31	1.80
44190676--44190938	81	3.3	78	78	6	226	42	19	6	31	1.77
44191261--44191379	40	2.9	41	85	3	161	23	22	28	25	1.99
44191953--44192160	81	2.6	82	76	3	215	43	19	7	29	1.78
44191952--44192210	27	9.6	27	78	3	162	43	19	8	29	1.79
44192110--44192222	27	4.1	27	82	8	113	38	15	13	32	1.87
44192482--44192600	40	2.9	41	89	1	177	20	21	30	27	1.98
44192745--44192809	22	3.0	22	75	8	69	24	24	20	30	1.98
44193200--44193435	27	8.7	27	82	2	217	41	18	7	31	1.79
44193174--44193490	54	5.9	53	79	3	240	40	18	8	32	1.81
44193169--44193433	81	3.3	80	77	7	234	41	18	7	32	1.80
44193173--44193496	27	12.0	27	79	6	205	39	18	9	32	1.83
44193756--44193874	40	2.9	41	82	1	150	23	21	28	26	1.99
44193760--44193874	41	2.8	40	81	1	140	23	21	28	26	1.99
44194474--44194656	27	6.7	27	80	5	156	42	20	8	28	1.80
44194448--44194651	81	2.5	81	79	5	216	42	19	8	29	1.81
44194523--44194710	54	3.4	53	79	11	148	40	18	9	31	1.81
44194666--44194718	27	2.0	27	88	0	79	39	13	13	33	1.83
44194845--44194895	20	2.5	20	81	6	59	23	3	31	41	1.73
44194982--44195099	41	2.9	41	90	0	173	22	23	28	24	1.99
44195242--44195308	22	3.0	22	78	8	73	23	22	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44212024--44212072	21	2.3	21	100	0	98	48	4	10	36	1.56
44220305--44220538	41	5.8	40	87	3	292	21	20	28	29	1.98
44237391--44237430	21	1.9	21	89	0	62	22	27	37	12	1.90
44240208--44240293	43	2.0	43	90	0	136	20	18	32	27	1.96
44250198--44250346	56	2.6	56	79	8	158	35	23	14	26	1.93
44253323--44253434	24	4.7	24	90	0	170	17	14	30	37	1.90
44258170--44258294	42	3.0	41	86	6	162	38	10	0	50	1.42
44263573--44263750	27	6.6	26	80	7	169	29	28	15	26	1.96
44263594--44263749	82	1.9	81	88	3	233	29	28	15	26	1.96
44271644--44271821	27	6.6	26	80	7	169	29	28	15	26	1.96
44271665--44271820	82	1.9	81	88	3	233	29	28	15	26	1.96
44280610--44280802	96	2.0	96	89	0	296	36	13	16	33	1.88
44286699--44286790	25	3.7	25	73	13	82	23	21	23	30	1.99
44289033--44289069	18	2.1	18	89	0	56	40	13	24	21	1.89
44289383--44289651	27	10.0	27	81	4	242	41	18	15	25	1.89
44289386--44289650	81	3.3	82	77	11	267	41	17	15	25	1.89
44289643--44289733	27	3.4	27	89	0	128	17	17	20	43	1.87
44294981--44295029	22	2.2	23	82	10	66	38	12	26	22	1.89
44296199--44296238	12	3.3	12	85	0	53	35	0	35	30	1.58
44296195--44296240	24	1.9	24	86	0	65	34	0	39	26	1.57
44297655--44297786	27	4.9	27	86	0	183	22	16	20	40	1.91
44299454--44299556	37	2.8	37	95	0	179	24	33	20	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44299697--44300130	48	9.0	48	95	0	769	31	28	6	34	1.82
44309264--44309379	59	2.0	59	84	3	153	31	21	1	45	1.62
44309264--44309389	30	4.3	29	82	8	130	33	20	2	43	1.65
44310867--44310903	18	2.1	18	90	5	58	29	10	10	48	1.72
44322801--44322835	14	2.5	14	90	0	61	17	11	11	60	1.59
44322727--44322994	91	3.0	90	84	4	334	25	14	20	38	1.92
44322745--44323299	78	6.8	88	82	9	437	29	16	21	33	1.95
44322815--44323376	77	7.1	77	82	7	603	28	16	20	34	1.94
44322920--44323356	235	1.9	231	85	5	601	29	17	21	31	1.96
44323584--44323683	30	3.3	30	81	2	130	27	27	4	42	1.73
44325185--44325219	18	1.9	18	88	0	52	37	8	2	51	1.47
44325250--44325325	17	4.2	17	74	11	62	22	9	13	55	1.66
44325234--44325301	35	1.9	34	82	11	84	25	11	11	51	1.72
44328404--44328479	37	2.1	37	92	0	125	30	30	18	21	1.97
44328625--44328809	48	3.8	48	93	1	316	31	26	6	35	1.82
44328625--44328808	98	1.9	97	94	2	325	30	26	6	35	1.82
44328779--44328971	93	2.1	94	89	1	289	26	29	10	33	1.90
44328779--44328971	47	4.1	47	90	1	289	26	29	10	33	1.90
44334191--44334345	43	3.6	42	79	3	166	30	25	16	27	1.97
44337370--44337430	19	3.2	19	74	4	61	26	22	27	22	1.99
44338911--44339117	10	21.4	9	66	17	53	60	2	4	31	1.32
44339002--44339067	29	2.3	29	84	5	80	66	4	3	25	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44339060--44339141	19	4.2	19	77	11	78	60	3	1	34	1.22
44339059--44339141	40	2.1	39	82	6	96	61	3	1	33	1.21
44339077--44339141	21	3.2	20	82	4	78	60	3	0	36	1.13
44339077--44339141	10	6.5	10	76	11	62	60	3	0	36	1.13
44343377--44343422	22	2.1	22	87	0	65	47	10	4	36	1.58
44345477--44345509	13	2.5	13	100	0	66	33	39	21	6	1.78
44354246--44354467	79	2.8	80	84	5	263	25	27	21	25	1.99
44354248--44354470	119	1.9	120	82	6	283	25	26	21	25	2.00
44354246--44354470	40	5.6	41	81	8	250	25	27	21	25	2.00
44361605--44361796	40	4.8	40	92	1	226	27	27	21	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253