genome.fa.s4.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  211  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69636134--69636182	22	2.2	22	82	7	55	26	10	0	63	1.26
69636147--69636183	11	3.5	11	82	17	51	24	2	0	72	0.97
69639015--69639056	18	2.3	19	84	12	52	14	14	7	64	1.48
69639470--69639519	20	2.5	20	80	0	55	22	10	16	52	1.73
69639512--69639577	20	3.3	19	81	10	78	19	12	4	63	1.45
69639429--69639576	60	2.5	60	73	6	140	23	10	8	57	1.59
69640549--69640597	21	2.5	20	78	18	57	69	0	0	30	0.89
69640557--69640605	21	2.1	25	85	14	70	65	0	0	34	0.93
69640558--69640605	13	3.5	13	78	10	51	66	0	0	33	0.92
69641053--69641146	20	4.7	20	75	10	93	21	19	3	56	1.56
69641038--69641146	40	2.7	41	75	16	118	21	17	5	55	1.61
69641114--69641178	20	3.1	20	84	6	76	18	12	10	58	1.62
69641636--69641681	21	2.2	21	84	0	56	52	13	15	19	1.75
69641718--69641795	38	2.1	39	95	4	142	42	5	0	52	1.23
69642626--69642720	49	1.9	50	91	2	156	16	17	11	53	1.72
69645235--69645317	41	2.0	41	97	0	157	55	19	12	13	1.68
69648545--69648587	22	1.9	23	86	13	63	41	2	0	55	1.12
69648561--69648647	31	2.9	29	86	5	111	48	4	1	45	1.30
69649524--69649561	14	2.6	15	87	4	51	78	0	18	2	0.86
69651467--69651491	11	2.3	11	100	0	50	72	0	0	28	0.86
69654175--69654290	55	2.1	55	80	6	128	56	19	0	23	1.42
69657503--69657539	14	2.6	14	95	0	65	24	27	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69661469--69661578	26	4.2	26	95	0	193	33	4	24	37	1.76
69673423--69673473	20	2.5	20	72	15	50	35	1	17	45	1.60
69673615--69673670	20	2.6	22	86	8	71	46	0	0	53	1.00
69673638--69673665	5	5.6	5	100	0	56	39	0	0	60	0.97
69673824--69673870	19	2.5	19	86	6	69	72	4	14	8	1.24
69673824--69673878	19	2.9	19	83	5	58	70	5	14	9	1.30
69673895--69673931	8	4.5	8	90	6	56	67	0	32	0	0.91
69673901--69673934	17	2.0	17	100	0	68	64	0	35	0	0.94
69675249--69675325	18	4.3	18	79	0	73	33	12	18	35	1.89
69675249--69675339	36	2.5	36	76	3	103	32	12	18	36	1.88
69678189--69678239	20	2.5	20	72	15	50	35	1	19	43	1.63
69678599--69678639	19	2.2	18	86	4	55	73	0	19	7	1.07
69679523--69679578	27	2.1	27	100	0	112	44	0	21	33	1.52
69679991--69680062	18	4.1	18	74	3	65	33	13	16	36	1.89
69698212--69698254	21	2.1	20	87	12	61	48	20	11	18	1.79
69699802--69699883	26	3.2	26	96	0	155	36	25	7	30	1.83
69699879--69699903	10	2.5	10	100	0	50	32	12	8	48	1.69
69702294--69702333	21	2.0	20	90	5	62	20	25	40	15	1.90
69703937--69703962	13	2.0	13	100	0	52	53	7	0	38	1.30
69705064--69705097	17	1.9	18	88	5	52	35	23	0	41	1.55
69706583--69706732	46	3.2	48	79	7	141	21	28	19	31	1.97
69706607--69706734	47	2.8	45	80	12	143	22	28	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69707072--69707145	30	2.5	30	100	0	148	32	24	9	33	1.87
69717814--69718174	46	7.7	47	75	14	234	25	28	16	28	1.97
69726400--69726512	43	2.6	44	83	8	126	25	17	23	32	1.97
69726709--69726778	34	2.1	34	94	0	122	41	1	20	37	1.61
69726709--69726790	34	2.4	34	85	4	112	41	1	19	37	1.59
69728982--69729166	40	4.6	40	85	4	246	24	23	26	25	2.00
69728986--69729166	83	2.2	80	87	3	247	23	23	27	25	2.00
69731962--69731995	17	2.0	17	100	0	68	17	17	5	58	1.57
69739808--69739867	30	2.0	30	90	0	93	38	8	25	28	1.84
69741642--69741709	33	2.1	33	94	5	120	30	13	17	38	1.88
69747344--69747403	30	2.0	30	86	0	84	38	6	25	30	1.81
69750744--69750768	5	5.0	5	100	0	50	40	0	0	60	0.97
69759977--69760059	26	3.2	26	93	3	141	36	24	4	34	1.77
69764113--69764165	26	2.0	27	85	7	74	24	15	22	37	1.92
69765649--69765732	26	3.2	26	96	0	150	35	23	5	34	1.80
69769522--69769797	48	5.9	48	73	10	246	29	25	19	25	1.99
69769617--69769797	96	1.9	96	88	0	272	28	25	19	25	1.99
69770935--69771074	57	2.4	58	80	9	144	31	22	15	30	1.95
69778213--69778316	43	2.4	43	90	0	163	27	32	19	20	1.96
69778316--69778350	17	1.9	17	88	11	52	77	0	0	22	0.78
69782519--69782567	15	3.5	15	72	16	50	12	57	0	30	1.36
69783035--69783097	23	2.7	23	77	18	85	55	6	0	38	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69783035--69783124	46	2.0	46	84	8	121	55	4	2	37	1.32
69784255--69784359	7	14.7	7	70	11	61	37	40	0	20	1.59
69784255--69784376	36	3.4	36	78	13	110	36	40	0	22	1.60
69784419--69784503	21	3.9	21	76	11	89	44	25	1	28	1.61
69784403--69784496	46	2.0	46	95	0	170	42	25	2	29	1.67
69784414--69784511	7	13.4	7	72	8	52	46	24	1	27	1.59
69784669--69784969	41	7.4	41	86	0	388	18	25	22	33	1.97
69786302--69786338	19	1.9	19	88	0	56	5	5	29	59	1.42
69790227--69790557	48	6.9	48	77	7	287	24	26	18	30	1.98
69790227--69790544	96	3.3	96	83	3	329	23	26	18	30	1.98
69790275--69790557	144	2.0	143	90	2	442	24	27	18	30	1.97
69797990--69798270	48	5.9	48	78	2	269	24	28	17	29	1.97
69797990--69798270	96	2.9	95	81	1	310	24	28	17	29	1.97
69797994--69798292	144	2.1	143	84	3	377	23	28	17	30	1.97
69809049--69809081	7	4.7	7	100	0	66	27	15	30	27	1.96
69812759--69812807	3	16.3	3	100	0	98	32	0	0	67	0.91
69814110--69814183	29	2.5	29	86	4	94	47	14	16	21	1.82
69818575--69818610	19	1.9	18	88	5	54	44	13	13	27	1.82
69819373--69819428	10	5.6	10	72	6	51	67	8	3	19	1.32
69819373--69819430	21	2.9	21	71	5	57	67	8	3	20	1.33
69824207--69824234	8	3.5	8	100	0	56	75	0	0	25	0.81
69827323--69827356	1	34.0	1	93	0	59	97	0	2	0	0.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69833931--69833967	19	1.9	19	94	0	65	27	5	5	62	1.39
69833697--69834027	179	1.8	183	92	4	573	30	5	3	59	1.38
69833747--69834011	3	86.7	3	67	21	108	31	5	3	58	1.39
69834200--69834251	3	16.7	3	77	15	52	34	0	1	63	1.06
69834356--69834418	22	2.8	21	78	7	63	38	6	7	47	1.58
69851931--69852103	70	2.5	69	83	4	199	28	14	22	34	1.93
69852107--69852443	149	2.2	148	84	5	435	32	15	18	33	1.92
69852121--69852460	77	4.5	75	86	3	443	32	15	19	32	1.93
69852860--69853112	73	3.5	72	92	3	400	32	17	18	31	1.94
69854887--69854927	21	2.0	21	90	0	64	34	4	2	58	1.32
69857360--69857387	12	2.3	12	100	0	56	53	14	0	32	1.41
69859285--69859333	23	2.1	23	92	0	80	28	20	14	36	1.92
69866650--69866682	10	3.3	10	95	0	57	12	21	24	42	1.86
69871686--69871766	22	3.7	22	78	3	83	19	28	18	33	1.96
69873985--69874160	89	2.0	87	93	2	298	43	21	6	29	1.77
69880454--69880478	10	2.5	10	100	0	50	28	0	0	72	0.86
69882130--69882167	19	2.0	19	100	0	76	36	15	0	47	1.46
69882705--69882729	10	2.5	10	100	0	50	28	0	0	72	0.86
69884380--69884417	19	2.0	19	100	0	76	36	15	0	47	1.46
69905308--69905376	31	2.3	31	85	7	88	43	11	10	34	1.75
69911070--69911111	20	2.1	20	90	0	66	23	0	2	73	0.94
69917556--69917592	17	2.2	16	86	13	56	29	0	2	67	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69918870--69918929	3	20.0	3	96	0	111	0	31	0	68	0.90
69923901--69923928	2	14.0	2	100	0	56	50	0	0	50	1.00
69924237--69924274	17	2.2	17	90	0	58	7	7	7	76	1.17
69924469--69924509	19	2.1	20	86	4	57	34	0	2	63	1.08
69925563--69925706	10	14.1	10	70	17	75	28	4	0	65	1.17
69925650--69925704	28	2.0	28	82	7	67	27	3	0	69	1.05
69927149--69927204	24	2.3	25	81	6	71	66	7	0	26	1.18
69927161--69927225	19	2.9	23	84	13	75	67	6	0	26	1.13
69932512--69932574	21	2.9	21	71	15	56	36	0	1	61	1.05
69933078--69933126	26	1.9	26	88	12	75	61	0	0	38	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253