genome.fa.s4.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  143  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45896402--45896504	27	3.8	27	81	0	116	33	24	8	33	1.86
45896483--45896845	27	13.4	27	72	12	120	38	22	7	31	1.83
45896497--45896569	28	2.6	28	87	6	96	42	21	6	28	1.79
45896497--45896587	28	3.3	28	80	13	82	41	20	7	29	1.80
45896497--45896865	54	6.8	54	70	8	196	39	21	8	30	1.83
45896715--45896866	81	1.9	81	81	8	184	40	23	7	28	1.82
45896862--45896959	27	3.6	27	72	10	74	37	15	20	26	1.92
45897567--45897614	25	1.9	25	86	0	69	35	22	14	27	1.93
45897650--45897736	20	4.3	20	91	2	131	40	11	18	29	1.86
45897786--45897882	26	3.8	26	84	1	135	26	23	21	27	1.99
45898028--45898119	42	2.2	42	90	0	139	30	14	20	34	1.92
45898143--45898248	31	3.4	31	93	0	176	29	15	26	29	1.96
45900469--45900693	27	8.3	27	74	7	123	35	22	8	33	1.85
45900548--45900620	28	2.6	28	93	2	121	43	20	5	30	1.74
45900534--45900900	27	13.6	27	75	8	165	38	21	7	31	1.82
45901844--45901995	37	4.1	37	90	0	223	26	32	20	21	1.97
45902116--45902391	47	5.9	47	87	0	399	27	28	10	32	1.90
45902116--45902392	94	2.9	94	91	0	455	28	28	10	32	1.90
45906501--45906810	40	7.8	40	90	1	453	25	27	21	25	2.00
45906501--45906810	118	2.6	120	92	1	507	25	27	21	25	2.00
45908062--45908204	37	3.9	37	89	5	220	25	32	19	22	1.97
45908062--45908196	71	1.9	71	93	0	234	25	31	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45908325--45908551	92	2.4	94	90	1	341	28	29	10	32	1.90
45908325--45908551	47	4.9	47	89	2	341	28	29	10	32	1.90
45908451--45908526	22	3.3	22	66	28	59	26	31	11	30	1.92
45908325--45908575	139	1.8	136	81	8	312	31	27	9	31	1.88
45911983--45912069	20	4.3	20	88	2	122	39	11	19	29	1.87
45912119--45912253	25	5.4	25	90	3	193	27	20	23	28	1.99
45912386--45912477	42	2.2	42	90	0	139	30	14	20	34	1.92
45915556--45915583	4	7.0	4	100	0	56	25	0	0	75	0.81
45924220--45924253	17	1.9	18	94	5	61	32	11	23	32	1.91
45937246--45937307	19	3.2	19	95	4	106	37	9	17	35	1.83
45940513--45940552	18	2.2	18	86	8	55	17	0	15	67	1.23
45940554--45940586	11	2.9	12	86	13	52	66	0	0	33	0.92
45942440--45942617	79	2.2	81	92	2	297	34	5	8	51	1.55
45943291--45943361	24	3.0	23	81	8	81	66	5	1	26	1.22
45945060--45945100	21	2.0	21	85	0	55	56	0	29	14	1.39
45945036--45945304	76	3.5	76	82	4	335	38	4	37	19	1.71
45945213--45945252	21	2.0	20	85	5	53	57	0	27	15	1.38
45951549--45951736	41	4.5	41	84	6	218	20	19	25	35	1.95
45952725--45952761	18	2.1	18	94	0	65	51	24	10	13	1.73
45963619--45963855	121	2.0	121	93	0	411	35	21	21	21	1.96
45966703--45966889	40	4.7	40	86	6	236	24	21	27	26	2.00
45966703--45966889	81	2.3	82	84	6	240	24	21	27	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45974591--45974775	40	4.7	40	86	6	243	24	22	27	25	2.00
45974591--45974775	79	2.3	81	87	4	252	24	22	27	25	2.00
45974592--45974808	79	2.7	79	83	5	226	25	22	27	24	2.00
45979379--45979446	29	2.4	28	82	7	75	20	22	26	30	1.98
45984741--45984835	49	1.9	49	86	0	136	25	23	6	45	1.76
45986127--45986208	43	1.9	43	92	5	139	24	21	1	52	1.54
45990824--45990917	47	2.0	47	100	0	188	31	14	19	34	1.92
46002614--46002704	45	2.0	45	91	0	146	25	12	23	39	1.89
46005886--46006068	79	2.3	81	83	7	223	24	27	22	24	2.00
46005865--46006068	40	5.1	40	81	8	229	24	27	22	25	2.00
46021003--46021094	27	3.4	27	71	4	87	26	26	11	35	1.91
46025914--46026094	63	2.9	61	83	5	215	27	7	30	34	1.84
46027388--46027446	20	3.0	20	94	0	100	11	32	37	18	1.87
46029691--46029836	39	3.7	39	92	0	247	30	30	21	17	1.96
46029644--46029836	78	2.5	78	86	2	253	31	27	20	20	1.97
46029626--46029852	39	5.8	39	84	1	213	30	28	20	20	1.98
46029819--46029938	39	3.1	39	85	7	172	30	30	21	17	1.96
46029644--46029935	78	3.7	79	81	4	238	30	28	20	20	1.98
46029691--46029911	117	1.9	118	80	8	263	30	29	20	18	1.97
46030011--46030083	28	2.6	28	86	0	110	28	23	9	38	1.86
46035528--46035553	12	2.2	12	100	0	52	69	0	7	23	1.14
46037482--46037546	23	2.8	23	85	0	85	16	16	26	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46037505--46037557	23	2.3	23	83	0	70	18	16	22	41	1.90
46039148--46039186	20	1.9	21	89	5	62	66	5	0	28	1.12
46041995--46042030	14	2.5	15	86	4	56	58	8	13	19	1.61
46044618--46044659	15	2.9	14	85	7	57	16	16	7	59	1.58
46046959--46046995	19	1.9	19	100	0	74	40	16	16	27	1.89
46048572--46048602	11	2.7	11	95	5	53	41	0	0	58	0.98
46048633--46048666	17	2.0	17	100	0	68	29	23	11	35	1.90
46051891--46052319	119	3.7	115	75	10	311	40	18	11	29	1.86
46062680--46062758	37	2.1	37	88	0	113	25	31	17	25	1.97
46062879--46063537	47	14.0	47	94	2	1092	29	30	8	31	1.87
46062879--46063537	236	2.8	233	94	2	1131	29	30	8	31	1.87
46062877--46063537	283	2.3	283	96	1	1200	29	30	8	31	1.87
46068092--46068192	51	2.0	51	98	0	193	36	4	17	40	1.72
46070157--46070208	13	3.5	15	76	19	56	28	7	0	63	1.22
46072187--46072245	29	2.0	29	90	6	93	30	1	13	54	1.49
46087721--46088259	266	2.0	266	99	0	1060	30	7	19	42	1.78
46091890--46091930	20	2.0	22	85	9	59	21	4	12	60	1.50
46096865--46096901	15	2.5	15	95	0	65	37	32	13	16	1.87
46099104--46099153	25	2.0	25	92	0	82	42	26	12	20	1.86
46101793--46101844	25	2.1	25	92	3	88	26	19	21	32	1.97
46101892--46101952	21	2.9	21	82	4	79	32	18	11	37	1.86
46101878--46101952	10	7.1	11	73	7	57	33	16	13	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46104274--46104429	47	3.3	46	78	9	172	28	19	27	24	1.98
46104271--46104443	94	1.8	94	87	4	260	27	19	27	24	1.99
46104274--46104491	94	2.3	93	81	10	239	27	18	28	24	1.98
46106118--46106288	43	4.0	42	76	9	150	24	18	28	28	1.98
46111904--46111933	14	2.1	14	93	0	51	23	6	23	46	1.75
46113986--46114155	92	1.8	93	93	1	297	29	28	20	21	1.98
46113981--46114152	46	3.7	46	75	14	192	30	27	19	22	1.98
46116480--46116538	3	19.3	3	92	3	100	0	30	0	69	0.89
46169605--46169777	46	3.7	46	75	14	185	22	20	27	29	1.98
46169602--46169772	93	1.8	93	92	2	290	22	20	28	28	1.98
46192713--46193200	140	3.5	140	95	1	870	25	17	20	37	1.94
46193038--46193071	13	2.5	13	90	4	50	20	11	8	58	1.59
46193205--46193345	72	2.0	72	100	0	282	32	16	18	32	1.93
46193299--46193394	49	2.0	49	95	0	174	30	15	20	33	1.94
46193227--46193466	121	2.0	121	94	0	426	30	16	18	34	1.93
46193348--46193700	77	4.7	75	88	4	464	30	16	19	33	1.94
46193348--46194076	149	4.6	149	76	14	538	30	16	18	34	1.94
46193548--46193871	169	1.9	168	84	5	429	30	17	19	32	1.95
46193714--46193917	79	2.6	78	83	5	245	32	18	18	30	1.94
46193872--46194033	88	1.8	87	84	7	220	27	17	18	36	1.94
46194058--46194119	30	2.1	30	90	6	99	19	9	29	41	1.83
46193474--46194287	254	3.3	246	82	8	862	28	16	19	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46197781--46197830	26	1.9	26	91	0	82	36	20	6	38	1.77
46206084--46206127	18	2.4	18	84	0	61	50	15	6	27	1.70
46213400--46213756	94	3.8	92	76	12	307	30	20	26	22	1.98
46213397--46213757	47	7.7	46	69	15	195	30	20	26	22	1.98
46215491--46215621	40	3.3	40	80	1	138	27	28	21	22	1.99
46240004--46240042	14	2.9	14	88	3	53	64	0	0	35	0.94
46242102--46242162	31	2.0	31	100	0	122	63	6	0	29	1.19
46242102--46242155	19	3.2	19	61	33	50	62	7	0	29	1.22
46244905--46244944	19	2.1	19	86	9	55	57	0	7	35	1.27
46245138--46245347	21	10.1	20	66	22	85	62	1	2	33	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253