genome.fa.s4.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  131  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41597730--41597887	39	4.1	39	85	3	185	28	28	19	23	1.98
41602020--41602258	50	4.8	50	82	3	259	22	30	17	28	1.97
41607844--41607881	20	1.9	19	89	5	58	55	21	0	23	1.44
41607844--41607881	19	2.0	20	85	15	53	55	21	0	23	1.44
41615129--41615195	28	2.4	28	87	9	93	26	13	26	32	1.94
41645222--41645270	15	3.3	15	76	0	53	6	32	0	61	1.21
41649447--41649587	50	2.8	50	84	2	165	26	19	25	28	1.98
41651503--41651558	15	3.7	15	79	15	71	10	14	12	62	1.55
41652726--41652765	16	2.5	16	100	0	80	40	17	25	17	1.91
41654202--41654391	50	3.8	49	83	1	218	26	18	26	28	1.98
41661422--41661450	14	2.0	15	93	6	51	51	20	0	27	1.47
41662646--41662766	43	2.9	42	78	2	161	34	15	21	28	1.94
41669184--41669262	27	2.9	27	81	10	99	43	18	6	31	1.76
41669242--41669302	27	2.2	28	88	2	88	40	16	13	29	1.86
41669358--41669393	14	2.6	14	95	0	63	16	8	33	41	1.78
41673794--41673940	64	2.2	66	81	8	163	31	17	29	21	1.96
41673818--41674002	67	2.9	64	75	8	178	29	16	29	25	1.96
41684253--41684347	46	2.1	46	97	0	181	43	23	4	29	1.72
41684462--41684528	30	2.2	29	87	7	98	20	32	23	22	1.98
41684841--41684879	10	3.7	11	86	10	55	51	25	7	15	1.70
41689601--41689821	40	5.6	40	89	3	317	22	22	27	28	1.99
41698104--41698327	40	5.6	40	89	1	317	23	21	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41702131--41702218	27	3.3	27	85	0	131	39	18	17	25	1.91
41702130--41702231	54	1.9	53	89	2	159	37	19	17	25	1.94
41708301--41708399	27	3.7	27	83	0	126	40	20	17	22	1.91
41708300--41708414	54	2.1	54	85	1	151	39	17	20	23	1.92
41708304--41708418	27	4.3	27	76	4	97	39	19	18	23	1.92
41709093--41709151	27	2.3	27	85	5	77	22	23	18	35	1.96
41715292--41715329	19	2.0	19	85	10	51	68	0	10	21	1.19
41718732--41718924	71	2.8	70	79	6	212	26	11	17	44	1.83
41723269--41723311	8	5.4	8	82	0	50	46	23	20	9	1.79
41723274--41723311	16	2.4	16	95	0	67	44	23	23	7	1.79
41723529--41723628	28	3.6	29	82	5	118	26	15	34	25	1.95
41726839--41726874	19	1.9	19	88	5	56	44	11	0	44	1.39
41727148--41727208	30	2.0	30	83	0	77	31	22	8	37	1.84
41729459--41729556	27	3.5	28	90	2	135	26	13	28	31	1.94
41729487--41729569	27	3.0	27	87	5	96	30	12	25	32	1.92
41729459--41729570	28	4.0	27	83	6	98	28	12	25	33	1.92
41735435--41735464	12	2.5	12	100	0	60	36	16	10	36	1.82
41737545--41737642	27	3.5	28	90	2	135	26	13	28	31	1.94
41737573--41737655	27	3.0	27	87	5	96	30	12	25	32	1.92
41737545--41737656	28	4.0	27	83	6	98	28	12	25	33	1.92
41753888--41754039	40	3.8	40	80	3	180	28	28	20	23	1.99
41753890--41754045	80	2.0	80	87	2	224	28	26	19	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41763536--41763589	29	2.0	28	82	13	69	40	29	3	25	1.73
41773752--41773936	40	4.6	40	87	3	237	21	21	28	29	1.98
41773752--41773936	81	2.3	80	85	3	237	21	21	28	29	1.98
41781143--41781212	35	2.0	34	91	8	115	34	17	7	41	1.76
41785354--41785536	41	4.6	39	84	8	210	28	28	21	21	1.98
41785354--41785535	42	4.6	38	85	7	206	28	29	20	21	1.98
41791488--41791672	79	2.3	82	84	7	238	25	27	22	24	2.00
41791488--41791672	40	4.7	40	83	7	234	25	27	22	24	2.00
41794416--41794475	20	2.9	21	82	9	70	41	1	1	55	1.20
41811267--41811306	16	2.5	16	95	0	71	40	5	12	42	1.64
41811407--41811455	23	2.1	23	82	14	57	46	8	8	36	1.63
41812070--41812107	18	2.1	18	90	9	60	34	0	0	65	0.93
41818544--41818706	50	3.2	50	84	1	218	25	12	19	43	1.85
41820540--41820617	41	1.9	41	82	10	97	16	20	30	32	1.95
41820757--41820918	50	3.2	50	94	0	288	24	11	22	41	1.87
41827542--41827619	41	1.9	41	82	10	97	16	20	30	32	1.95
41827759--41827920	50	3.2	50	92	0	279	24	11	21	42	1.86
41830187--41830302	57	2.0	57	91	0	187	40	12	12	34	1.81
41833582--41833904	48	6.8	48	76	4	278	22	28	20	28	1.99
41833581--41833813	96	2.4	94	85	4	315	22	27	20	28	1.99
41833634--41833904	95	2.8	95	82	4	287	22	29	19	28	1.98
41833584--41833914	143	2.3	144	83	4	391	23	28	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41842406--41842488	30	2.8	30	70	7	87	26	16	28	27	1.97
41843136--41843293	48	3.3	48	75	6	149	25	31	16	25	1.96
41843109--41843292	96	1.9	96	82	4	228	25	30	17	26	1.98
41845941--41846060	48	2.6	46	79	10	127	29	21	14	35	1.93
41851035--41851131	48	2.1	48	82	7	119	37	14	22	25	1.92
41853755--41853841	41	2.1	42	87	6	124	22	13	29	33	1.93
41856448--41856480	9	3.8	9	96	4	59	66	21	0	12	1.23
41860042--41860131	47	1.9	47	97	0	171	32	25	14	27	1.95
41863539--41863685	43	3.4	42	82	10	149	29	26	19	23	1.98
41863535--41863685	42	3.5	43	81	10	184	29	26	19	23	1.98
41865915--41865998	27	3.1	27	83	6	98	30	16	22	29	1.96
41865980--41866296	27	11.7	27	83	2	314	41	19	9	30	1.82
41866534--41866654	41	3.0	41	87	0	179	20	22	28	28	1.99
41869668--41869744	27	2.9	27	88	0	109	32	15	22	29	1.95
41869733--41870028	27	10.9	27	76	5	184	41	17	10	30	1.82
41869733--41870017	54	5.2	53	75	7	214	43	17	9	29	1.80
41869733--41869937	81	2.5	80	78	3	203	41	18	9	30	1.82
41870287--41870405	41	2.9	41	86	2	159	24	19	27	28	1.98
41870552--41870616	22	3.0	22	78	13	62	21	26	20	32	1.97
41873293--41873353	18	3.7	18	77	18	78	21	8	13	57	1.62
41873289--41873353	32	2.0	32	96	0	121	20	9	13	56	1.64
41874066--41874194	44	3.0	43	82	6	145	21	14	26	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41874085--41874194	42	2.5	43	84	7	125	22	14	25	37	1.92
41877319--41877458	42	3.3	43	84	5	167	27	16	24	32	1.96
41880278--41880311	7	4.7	7	92	7	59	52	0	0	47	1.00
41883854--41883883	12	2.5	12	94	0	51	26	43	23	6	1.78
41895566--41895626	28	2.1	29	96	3	115	27	27	21	22	1.99
41895734--41895794	28	2.2	28	81	0	77	31	21	19	27	1.97
41911316--41911377	24	2.6	24	89	0	88	32	27	4	35	1.78
41912974--41913909	466	2.0	467	99	0	1856	32	16	25	25	1.96
41914703--41914749	21	2.2	22	92	3	78	21	19	38	21	1.94
41918996--41919197	43	4.7	43	85	4	284	30	26	17	25	1.98
41918982--41919197	84	2.5	84	88	4	292	31	26	17	24	1.97
41919497--41919526	15	2.0	15	93	0	51	50	20	0	30	1.49
41922103--41922280	27	6.6	27	75	6	119	29	26	16	28	1.97
41922103--41922280	54	3.3	54	74	12	150	29	26	16	28	1.97
41930108--41930285	27	6.6	27	75	6	119	29	26	16	28	1.97
41930108--41930285	54	3.3	54	74	12	150	29	26	16	28	1.97
41951269--41951554	40	7.2	40	95	1	477	29	26	22	22	1.99
41952968--41952995	13	2.2	13	100	0	56	57	14	0	28	1.38
41966154--41966419	48	5.6	47	77	9	211	26	19	29	24	1.98
41966204--41966416	50	4.4	48	81	9	202	25	20	30	23	1.99
41966241--41966416	96	1.8	96	87	6	264	25	19	30	24	1.98
41981478--41981653	46	3.8	46	79	12	216	22	20	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41981475--41981645	93	1.8	93	96	0	315	22	21	28	28	1.99
41984910--41985059	37	4.1	37	88	3	221	28	32	17	22	1.96
41985178--41985402	47	4.7	47	89	3	317	28	30	8	32	1.87
41985178--41985402	96	2.4	94	88	3	326	28	30	8	32	1.87
41988341--41988513	49	3.6	48	74	8	145	29	20	26	24	1.99
41991374--41991452	37	2.1	37	90	0	122	25	31	18	24	1.98
41991571--41992334	47	16.1	47	92	2	1217	28	29	9	32	1.88
41991571--41992334	143	5.4	141	93	2	1235	28	29	9	32	1.88
41991571--41992334	190	4.0	189	94	0	1285	28	29	9	32	1.88
41995992--41996022	15	2.1	15	100	0	62	29	25	25	19	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253