genome.fa.s4.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  141  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45174411--45174655	49	4.9	49	81	3	301	31	26	16	25	1.96
45174410--45174654	100	2.5	99	84	2	312	31	26	16	25	1.96
45178783--45178889	44	2.5	42	87	6	144	21	18	28	31	1.97
45178783--45178940	42	3.7	42	80	9	167	23	17	27	32	1.96
45185255--45185306	15	3.2	15	73	19	50	44	0	1	53	1.11
45185339--45185375	16	2.3	16	86	13	58	40	0	0	59	0.97
45185385--45185442	22	2.7	22	84	5	66	51	0	0	48	1.00
45185515--45185545	6	5.2	6	100	0	62	80	0	0	19	0.71
45187261--45187302	22	1.9	22	90	0	66	47	2	11	38	1.53
45194430--45194473	20	2.1	21	83	4	54	72	4	0	22	1.02
45194602--45194658	17	3.2	18	83	11	73	66	0	1	31	1.02
45194744--45194792	20	2.3	21	82	10	64	59	6	0	34	1.22
45194675--45194829	48	3.2	47	72	19	129	57	3	1	38	1.23
45194742--45194840	38	2.6	37	76	12	103	59	4	0	36	1.16
45195414--45195489	10	7.9	9	73	15	55	27	1	2	68	1.11
45195414--45195490	19	3.9	19	73	19	61	28	1	2	67	1.12
45195414--45195534	29	4.1	30	71	7	97	28	2	4	64	1.25
45195472--45195518	20	2.3	20	81	0	58	31	4	8	55	1.49
45195776--45195809	17	1.9	18	94	5	61	55	5	11	26	1.58
45195544--45196839	661	2.0	661	86	2	1836	35	19	18	26	1.95
45197188--45197237	10	5.0	10	83	9	57	68	2	6	24	1.23
45197251--45197287	13	2.8	13	87	4	56	45	10	0	43	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45197853--45197898	9	5.0	9	78	5	56	0	19	0	80	0.71
45197915--45198096	96	1.9	97	88	1	276	31	25	15	26	1.96
45199150--45199201	15	3.5	15	76	10	61	73	0	5	21	1.04
45199149--45199207	30	2.0	29	93	3	100	74	0	5	20	1.00
45199164--45199228	22	2.9	22	78	15	71	72	0	6	21	1.06
45202871--45202930	10	6.0	10	82	7	68	68	3	6	21	1.28
45202944--45202981	13	2.8	13	88	4	58	44	13	0	42	1.43
45203254--45203323	19	3.9	18	71	17	56	35	0	4	60	1.17
45203901--45203973	20	3.7	20	73	8	69	42	19	6	31	1.77
45215381--45215639	46	5.5	47	79	13	250	25	30	16	28	1.97
45215281--45215645	94	3.9	92	79	12	309	25	29	18	27	1.98
45215281--45215642	46	7.7	48	78	11	245	25	29	18	27	1.98
45224969--45225082	43	2.7	42	78	5	131	25	16	25	32	1.96
45229901--45229975	38	2.0	38	97	2	143	29	13	22	34	1.92
45231356--45231393	16	2.4	16	95	0	67	23	13	34	28	1.92
45232149--45232377	46	5.0	46	86	3	273	22	24	14	38	1.91
45232149--45232377	93	2.5	92	84	3	289	22	24	14	38	1.91
45234722--45235063	40	8.6	40	90	2	494	24	20	28	26	1.99
45243123--45243215	43	2.2	43	92	0	150	24	32	19	23	1.98
45255894--45255987	41	2.3	41	85	1	118	51	7	21	20	1.72
45258140--45258182	20	2.2	20	87	8	61	48	0	2	48	1.14
45258485--45258526	13	3.1	14	80	10	52	73	0	19	7	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45258491--45258554	12	5.3	12	75	14	51	70	0	18	10	1.16
45262079--45262112	12	2.8	13	86	13	54	52	2	0	44	1.16
45264634--45264840	91	2.3	90	80	0	216	34	19	12	32	1.90
45270871--45270971	43	2.3	43	83	3	114	45	19	9	24	1.81
45270939--45271031	43	2.2	43	86	0	123	40	19	15	24	1.90
45272676--45272897	47	4.7	47	77	6	202	27	18	30	22	1.98
45274169--45274226	21	2.8	21	84	7	75	12	32	29	25	1.92
45284220--45284439	47	4.7	46	77	16	193	28	17	30	23	1.97
45284219--45284439	94	2.3	95	81	8	254	28	17	31	23	1.97
45285492--45285549	21	2.8	21	97	2	109	10	34	31	24	1.89
45288910--45288958	9	6.0	8	78	21	57	53	14	0	32	1.41
45288914--45288963	24	2.1	24	100	0	100	56	16	0	28	1.41
45294124--45294162	17	2.3	17	95	0	69	30	23	30	15	1.95
45298121--45298157	17	2.2	17	90	0	56	40	5	2	51	1.39
45312839--45312866	13	2.2	13	100	0	56	17	35	32	14	1.90
45321019--45321043	10	2.5	10	100	0	50	56	8	0	36	1.29
45343709--45343873	46	3.7	44	78	13	192	20	21	29	29	1.98
45343706--45343873	90	1.8	91	93	2	293	20	21	29	28	1.98
45344098--45344135	19	2.0	20	85	15	53	36	0	23	39	1.55
45354434--45354615	39	4.6	39	81	8	201	24	21	28	26	1.99
45358493--45358528	6	6.0	6	93	0	63	50	30	0	19	1.48
45370155--45370339	79	2.3	81	84	9	238	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45370155--45370339	40	4.6	41	84	9	240	25	27	22	24	2.00
45370904--45370947	22	2.0	21	83	12	54	40	15	4	38	1.68
45379588--45379623	18	1.9	19	88	5	56	63	0	36	0	0.94
45382638--45382666	6	4.8	6	100	0	58	17	0	0	82	0.66
45386252--45386329	25	2.8	26	77	11	77	46	10	19	24	1.81
45390147--45390267	63	1.9	63	86	3	172	41	10	12	35	1.78
45391571--45391659	46	2.0	44	82	8	108	40	8	19	31	1.82
45392754--45392785	16	2.0	16	93	0	55	46	0	0	53	1.00
45399014--45399217	41	5.0	41	87	3	232	32	20	24	23	1.98
45399395--45399473	26	3.2	26	61	23	60	37	8	16	36	1.80
45407523--45407579	15	3.9	15	88	2	89	35	0	12	52	1.39
45407962--45408021	21	2.8	23	85	14	92	13	23	28	35	1.92
45411231--45411312	26	3.2	26	62	19	64	24	17	29	29	1.97
45411177--45411342	50	3.3	49	81	12	185	23	14	28	33	1.94
45411315--45411376	31	2.0	31	90	0	97	27	9	30	32	1.89
45411232--45411477	132	1.9	131	87	2	359	25	16	28	30	1.97
45411354--45411537	50	3.7	50	78	5	149	24	18	27	29	1.98
45411749--45411778	16	1.9	15	93	6	51	43	0	23	33	1.54
45416969--45417050	26	3.2	26	96	0	155	30	6	26	36	1.81
45421295--45421385	18	5.0	18	76	1	83	39	12	8	39	1.74
45421300--45421388	36	2.4	37	79	1	117	38	12	10	39	1.77
45421513--45421619	47	2.3	47	90	0	160	42	21	19	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45421662--45421688	6	4.5	6	100	0	54	48	14	18	18	1.82
45423503--45423555	16	3.4	16	76	19	51	50	0	1	47	1.12
45430243--45430285	11	3.8	11	81	3	50	53	0	2	44	1.13
45431384--45431479	48	2.0	46	90	4	147	27	18	10	43	1.82
45432290--45432348	27	2.3	26	82	11	68	50	0	1	47	1.11
45432289--45432348	25	2.3	26	80	11	70	51	0	1	46	1.10
45438536--45438580	22	2.0	22	82	0	54	33	11	8	46	1.70
45450297--45450448	43	3.5	43	83	4	191	28	17	23	30	1.97
45450393--45450490	42	2.3	42	81	8	110	29	18	20	31	1.96
45464159--45464198	15	2.7	15	92	7	64	20	32	20	27	1.97
45465556--45465583	5	5.6	5	100	0	56	82	0	0	17	0.68
45470635--45470711	32	2.4	32	80	0	91	24	24	6	44	1.77
45475136--45475212	32	2.4	32	80	0	91	24	24	6	44	1.77
45476596--45477251	47	13.7	47	95	1	1089	29	29	8	32	1.87
45476596--45477230	145	4.4	145	95	2	1092	29	29	8	32	1.87
45481543--45481597	22	2.6	22	77	5	60	56	12	0	30	1.37
45482893--45482928	12	3.0	12	87	0	54	0	13	0	86	0.58
45483015--45483045	12	2.7	12	95	5	55	70	29	0	0	0.87
45486515--45486554	21	2.0	20	90	5	62	42	22	0	35	1.54
45498935--45499047	33	3.5	33	75	10	124	30	19	24	24	1.98
45498932--45499074	65	2.2	66	93	1	243	32	18	23	25	1.97
45502473--45502593	46	2.6	46	98	0	233	24	26	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45502566--45502687	46	2.6	48	85	5	160	23	26	19	30	1.98
45504122--45504151	15	2.0	15	93	0	51	40	10	6	43	1.64
45505850--45506112	40	6.6	40	87	3	316	24	20	28	26	1.99
45505889--45506147	80	3.3	80	84	3	238	25	20	28	25	1.99
45513792--45514054	40	6.6	40	87	3	316	24	20	28	26	1.99
45513831--45514089	80	3.3	80	84	3	238	25	20	28	25	1.99
45517551--45517639	28	3.1	28	95	1	160	47	20	0	32	1.50
45520501--45520604	53	2.0	53	86	0	145	21	25	19	33	1.97
45526288--45526552	104	2.6	103	93	1	449	30	29	20	20	1.97
45526452--45526629	77	2.3	77	90	3	279	33	28	19	18	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253