genome.fa.s4.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  124  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39327460--39327684	40	5.7	40	86	5	296	24	22	28	25	2.00
39327460--39327717	119	2.2	119	81	6	292	25	21	27	25	1.99
39341447--39341664	40	5.5	40	89	1	314	26	27	23	22	1.99
39348858--39349002	40	3.6	40	85	4	193	25	24	26	23	2.00
39352937--39353088	40	3.8	40	90	0	241	26	28	22	22	1.99
39357759--39357980	40	5.6	40	87	1	295	23	20	25	29	1.99
39360974--39361240	47	5.7	46	73	14	181	28	19	28	23	1.99
39370611--39370748	67	2.0	67	87	5	195	29	22	28	18	1.98
39370682--39370733	27	2.0	26	84	3	68	34	21	26	17	1.95
39377993--39378052	27	2.3	26	85	2	75	35	20	23	21	1.96
39378014--39378075	33	1.9	32	83	3	79	35	20	22	20	1.96
39381713--39381847	24	5.6	24	75	6	114	25	11	28	34	1.91
39386628--39386666	10	3.9	10	100	0	78	38	0	20	41	1.53
39388035--39388071	18	2.1	19	85	10	51	10	29	43	16	1.82
39388509--39388592	34	2.6	32	79	11	89	21	22	25	30	1.98
39390709--39390915	40	5.2	40	83	8	253	26	28	21	24	1.99
39390705--39390912	79	2.6	78	82	9	244	26	27	21	24	1.99
39400720--39400779	27	2.3	26	85	2	75	35	20	23	21	1.96
39400747--39400884	67	2.0	67	83	5	168	30	21	28	18	1.97
39408231--39408282	27	2.0	26	84	3	68	34	21	26	17	1.95
39410580--39410616	15	2.6	14	87	8	56	67	0	10	21	1.21
39411842--39411929	24	3.7	24	87	0	122	22	14	28	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39416925--39416954	10	3.0	10	95	0	51	43	0	16	40	1.48
39426590--39426619	10	3.0	10	100	0	60	40	0	20	40	1.52
39427969--39428005	18	2.1	19	85	10	51	10	27	43	18	1.83
39443194--39443317	55	2.3	55	80	2	142	25	29	29	16	1.96
39448658--39448882	40	5.6	40	81	4	231	24	26	24	25	2.00
39448622--39448882	80	3.3	80	82	3	276	24	25	24	26	2.00
39451765--39451849	37	2.3	37	83	4	100	28	21	24	25	1.99
39451829--39452057	48	4.8	48	83	2	298	27	17	25	29	1.97
39451829--39452057	96	2.4	96	87	0	332	27	17	25	29	1.97
39452010--39452101	42	2.2	41	82	5	105	27	15	25	32	1.95
39453932--39453956	12	2.1	12	100	0	50	32	8	32	28	1.86
39458679--39458845	40	4.2	40	78	9	178	24	27	16	31	1.97
39458691--39458881	80	2.4	80	81	0	229	24	27	14	34	1.94
39458637--39458855	120	1.8	120	84	2	296	23	26	17	31	1.97
39458704--39458847	20	7.2	20	62	6	58	23	28	15	31	1.96
39458697--39458855	40	4.0	40	81	3	185	23	28	15	32	1.95
39469529--39469653	66	1.9	66	83	3	162	24	25	28	20	1.99
39474902--39475119	46	4.7	45	77	8	215	23	19	24	32	1.98
39478024--39478102	15	5.4	15	80	8	92	10	16	13	59	1.60
39478015--39478101	30	3.0	30	81	9	99	10	16	16	57	1.65
39480492--39480666	46	3.8	46	79	10	212	21	21	28	29	1.98
39480488--39480658	93	1.8	93	94	0	306	21	21	28	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39490408--39490529	47	2.6	47	96	0	217	36	14	22	26	1.93
39490508--39490691	54	3.4	54	77	8	185	36	15	23	24	1.93
39490516--39490726	108	2.0	109	82	1	264	38	15	23	23	1.92
39491989--39492092	54	1.9	54	88	0	154	33	20	23	23	1.97
39491982--39492096	27	4.3	27	83	1	133	35	19	22	22	1.96
39492715--39492766	27	2.0	26	84	3	68	17	26	21	34	1.95
39499893--39500071	85	2.1	85	98	0	349	37	8	27	26	1.85
39502258--39502791	47	11.1	47	86	5	717	30	12	30	26	1.93
39502258--39502791	145	3.7	144	88	5	774	30	12	30	26	1.93
39502601--39502675	23	3.2	23	62	23	57	29	10	32	28	1.90
39502765--39502855	46	2.0	46	84	0	119	32	9	31	25	1.89
39503000--39503144	37	3.9	37	93	0	236	25	19	29	25	1.98
39504469--39504528	31	1.9	31	83	6	77	41	5	20	33	1.74
39504506--39504553	25	2.0	24	84	12	62	41	2	25	31	1.67
39510558--39510702	39	3.7	39	85	0	200	28	27	23	20	1.99
39516092--39516123	16	2.0	16	100	0	64	50	31	12	6	1.65
39516050--39516166	59	2.0	58	88	1	171	35	33	20	10	1.86
39516108--39516205	43	2.3	43	92	0	160	32	33	21	12	1.90
39516198--39516271	38	1.9	38	86	0	103	25	25	24	24	2.00
39522337--39522591	55	4.8	54	78	7	238	35	17	25	21	1.95
39522347--39522544	108	1.8	110	86	4	294	33	17	25	23	1.96
39522660--39522704	23	1.9	24	90	4	74	42	11	22	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39535343--39535456	31	3.7	31	89	2	178	28	24	16	29	1.97
39535662--39535745	25	3.4	25	85	3	80	25	21	21	32	1.98
39536646--39536753	27	3.9	27	77	13	94	32	8	17	41	1.79
39536710--39536859	27	5.6	26	81	6	158	28	8	20	42	1.82
39536625--39536859	54	4.3	52	77	9	184	31	9	19	40	1.83
39536737--39536892	54	2.9	54	83	5	165	30	10	17	41	1.84
39536738--39536892	81	1.9	81	83	7	199	30	10	17	41	1.84
39536891--39537036	27	5.4	27	84	0	193	41	6	23	28	1.80
39536891--39537050	54	3.0	54	87	0	221	39	6	22	31	1.80
39536881--39537061	81	2.2	80	80	6	220	38	8	23	30	1.84
39539298--39539348	24	2.2	23	92	3	84	25	27	17	29	1.98
39539320--39539404	31	2.8	31	96	1	154	28	27	15	29	1.96
39539611--39539694	25	3.4	25	88	3	98	22	22	23	30	1.99
39546080--39546181	45	2.2	47	79	8	113	28	19	13	38	1.90
39548516--39548557	22	2.1	19	86	13	57	45	2	0	52	1.13
39551650--39551676	13	2.1	13	100	0	54	14	37	33	14	1.88
39553663--39553762	51	2.0	51	87	0	146	23	19	28	30	1.98
39554002--39554032	14	2.2	14	94	0	53	58	3	29	9	1.46
39555843--39555882	21	2.0	20	85	5	53	45	7	10	37	1.66
39559903--39560643	47	15.6	47	91	4	1103	33	8	28	28	1.87
39559903--39560643	96	7.8	94	91	3	1103	33	8	28	28	1.87
39559903--39560643	143	5.2	141	91	3	1121	33	8	28	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39563200--39563399	40	5.1	40	87	1	260	24	21	28	26	1.99
39563210--39563276	23	3.2	23	60	24	56	26	22	25	25	2.00
39564654--39564832	85	2.1	85	98	0	349	37	8	27	26	1.85
39566093--39566785	140	4.9	141	93	3	1097	33	8	29	28	1.87
39566393--39566468	22	3.3	22	64	10	62	32	10	27	28	1.90
39566093--39566779	47	14.6	47	94	2	1094	33	8	29	28	1.87
39573134--39573339	40	5.2	40	94	1	344	27	27	22	22	1.99
39578359--39578592	59	3.9	59	82	3	213	38	11	25	23	1.89
39578359--39578623	29	9.0	29	74	8	178	38	13	25	23	1.91
39585199--39585272	29	2.6	29	82	4	87	25	32	16	25	1.96
39590122--39590317	53	3.6	54	76	6	146	39	16	22	21	1.92
39601644--39601747	40	2.6	40	93	1	174	24	23	25	26	2.00
39607011--39607040	13	2.3	13	100	0	60	20	33	40	6	1.78
39611130--39611261	55	2.4	55	81	0	147	33	31	21	12	1.92
39622349--39622381	14	2.4	14	85	14	50	60	18	0	21	1.36
39622349--39622381	15	2.4	14	90	10	50	60	18	0	21	1.36
39625830--39625882	27	2.0	27	81	3	63	35	9	26	28	1.87
39625867--39625936	27	2.6	27	86	0	104	28	18	24	28	1.98
39628350--39628415	33	2.0	33	93	0	114	39	18	4	37	1.71
39629213--39629251	21	1.9	20	94	5	69	46	23	0	30	1.53
39636162--39636276	31	3.7	31	90	3	180	29	26	15	27	1.96
39636300--39636433	42	3.2	42	96	0	250	33	19	14	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39637435--39637511	26	2.9	26	75	11	75	22	16	20	40	1.91
39637552--39637659	27	3.9	27	78	13	94	31	7	18	42	1.78
39637601--39637771	27	6.3	27	75	8	132	28	9	20	41	1.83
39637770--39637967	27	7.3	27	87	2	272	38	7	24	28	1.83
39637770--39637967	81	2.4	81	91	1	317	38	7	24	28	1.83
39649960--39650038	37	2.1	37	88	4	115	26	31	17	24	1.97
39650156--39650425	47	5.7	47	95	1	468	29	30	9	30	1.88
39650287--39650365	25	3.3	25	64	10	74	34	27	5	32	1.79
39658541--39658594	25	2.2	25	89	0	81	44	0	14	40	1.46
39658548--39658598	25	2.0	25	100	0	102	37	0	15	47	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253