Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  100  of  253  ( 30316 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31225541--31225571
12
2.6
12
100
0
62
45
12
16
25
1.83
31227747--31227843
30
3.2
30
75
2
106
27
26
16
28
1.97
31233114--31233154
11
3.6
11
96
3
73
78
0
7
14
0.96
31239667--31239807
24
5.9
24
81
3
158
34
31
13
20
1.91
31249307--31249347
14
2.9
14
85
10
57
2
21
0
75
0.92
31251370--31251404
17
2.1
17
94
0
61
25
5
5
62
1.40
31253978--31254133
27
5.7
27
78
6
145
27
28
16
28
1.97
31253983--31254134
54
2.8
55
80
4
182
26
27
16
28
1.97
31259561--31259672
55
2.0
55
92
0
188
22
28
23
25
1.99
31262092--31262246
27
5.7
27
78
7
145
27
27
16
28
1.97
31262097--31262247
54
2.8
55
80
5
182
27
27
16
29
1.97
31265797--31265859
33
1.9
33
84
12
85
12
26
6
53
1.62
31265857--31265912
21
2.7
21
72
5
51
8
17
1
71
1.21
31265856--31265912
14
4.1
14
75
16
57
8
17
1
71
1.19
31265874--31265977
18
5.6
18
73
10
84
6
18
3
71
1.24
31265874--31265981
6
17.7
6
70
5
74
6
18
3
71
1.23
31269294--31269346
23
2.4
22
76
20
56
9
18
1
69
1.25
31272431--31272492
27
2.3
27
86
10
83
4
14
4
75
1.13
31272473--31272533
13
4.6
12
74
20
50
16
8
3
72
1.23
31272512--31272544
10
3.0
11
91
8
50
15
3
9
72
1.21
31275129--31275175
20
2.3
20
85
0
67
21
12
36
29
1.91
31276844--31276949
48
2.2
48
85
9
137
14
24
1
59
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31278030--31278054
11
2.3
11
100
0
50
16
0
8
76
1.02
31279547--31279593
20
2.3
20
85
0
67
21
12
36
29
1.91
31282055--31282095
20
1.9
20
85
14
55
36
0
14
48
1.44
31284837--31284896
29
2.0
29
84
12
77
46
1
16
35
1.57
31287054--31287188
48
2.8
48
85
3
182
25
22
30
22
1.99
31288883--31288980
30
3.3
30
69
4
81
29
15
26
28
1.96
31291637--31291735
30
3.3
30
75
2
101
29
16
28
26
1.97
31291763--31291814
20
2.5
20
96
3
95
30
13
26
28
1.94
31293161--31293207
20
2.3
20
81
0
58
31
34
12
21
1.91
31294705--31294759
24
2.3
25
78
9
60
76
3
10
9
1.13
31295810--31295928
6
19.2
6
68
9
69
70
4
19
5
1.25
31295878--31295934
14
4.3
13
75
16
55
70
1
19
8
1.23
31295997--31296101
47
2.2
47
82
14
119
59
1
24
14
1.46
31297768--31297814
20
2.3
20
85
0
67
29
36
12
21
1.91
31299312--31299366
24
2.3
25
78
9
60
76
3
10
9
1.13
31300415--31300522
6
17.7
6
68
6
65
70
3
19
6
1.25
31300419--31300477
18
3.3
18
80
0
73
71
6
16
5
1.26
31300483--31300520
13
2.8
13
82
17
51
73
0
18
7
1.06
31300484--31300534
21
2.4
21
74
6
50
74
1
17
5
1.11
31300436--31300540
27
3.8
27
71
9
77
68
2
20
8
1.29
31300603--31300708
48
2.2
47
85
9
135
59
1
24
14
1.45
31302375--31302421
20
2.3
20
85
0
67
29
36
12
21
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31305406--31305509
44
2.4
44
88
0
154
26
12
27
32
1.93
31319129--31319173
21
2.1
22
84
15
60
77
4
17
0
0.92
31320276--31320412
55
2.5
55
98
1
267
33
16
26
24
1.95
31321503--31321565
13
4.6
14
76
19
53
79
3
3
14
0.98
31321503--31321566
14
4.6
14
74
16
53
79
3
3
14
0.97
31321514--31321566
14
3.5
16
82
12
76
79
3
3
13
1.01
31321514--31321571
29
2.0
29
93
3
98
72
3
6
17
1.21
31321607--31321662
13
3.9
13
75
20
58
76
1
14
7
1.07
31321611--31321680
30
2.3
31
87
7
99
77
2
10
10
1.10
31324233--31324369
55
2.5
55
98
1
267
33
16
26
24
1.95
31328013--31328075
21
3.0
21
88
2
90
30
3
33
33
1.74
31331712--31331759
15
3.3
15
73
5
53
31
0
25
43
1.55
31332828--31332883
24
2.4
23
72
3
58
23
3
32
41
1.71
31337372--31337396
13
1.9
13
100
0
50
16
8
0
76
1.02
31337720--31337763
22
2.0
22
95
0
79
34
4
36
25
1.76
31342698--31342732
18
1.9
18
88
11
54
22
20
0
57
1.41
31342720--31342824
6
17.2
6
66
9
52
7
17
3
71
1.25
31342771--31342824
6
9.2
6
75
4
56
3
14
5
75
1.12
31343539--31343572
4
8.0
4
90
9
50
23
0
2
73
0.97
31343522--31343581
22
2.7
22
73
19
61
26
0
6
66
1.16
31346432--31346478
20
2.3
20
85
0
67
21
12
36
29
1.91
31350403--31350458
30
1.9
28
85
7
76
12
30
3
53
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31351484--31351518
19
1.9
19
88
11
56
14
5
11
68
1.37
31352436--31352493
10
5.7
10
76
11
64
29
27
13
29
1.94
31352436--31352496
20
3.0
20
83
9
79
27
26
13
32
1.93
31354724--31354820
30
3.2
30
71
11
83
28
28
15
26
1.96
31362332--31362357
13
2.0
13
100
0
52
46
7
0
46
1.31
31362747--31362785
20
1.9
21
89
5
62
35
12
28
23
1.91
31378279--31378362
30
2.8
28
77
15
80
9
15
4
70
1.31
31378354--31378405
17
3.6
14
78
16
52
15
5
3
75
1.14
31378343--31378414
13
5.5
13
76
19
53
13
6
4
75
1.17
31380152--31380188
17
2.1
18
90
5
58
48
10
0
40
1.38
31383791--31383834
22
2.0
22
95
0
79
25
36
4
34
1.76
31385265--31385298
15
2.3
15
94
0
59
35
26
32
5
1.81
31386736--31386778
20
2.2
20
86
0
59
53
2
30
13
1.53
31394686--31394753
5
13.0
5
75
17
59
77
1
16
4
0.99
31394697--31394753
16
3.7
14
80
17
60
77
0
17
5
0.95
31394827--31394889
24
2.6
24
79
0
72
63
0
25
11
1.27
31394827--31394871
12
3.8
12
81
0
54
66
0
24
8
1.20
31395299--31395329
15
2.1
15
100
0
62
32
6
19
41
1.77
31396906--31398814
953
2.0
953
100
0
3818
26
22
17
34
1.96
31399878--31399945
21
3.2
20
80
12
75
79
2
16
1
0.93
31399878--31399945
5
13.0
5
75
17
59
79
2
16
1
0.93
31400005--31400048
18
2.4
18
76
0
52
70
0
13
15
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31400019--31400078
24
2.5
24
75
8
59
63
0
23
13
1.29
31401698--31401745
20
2.4
20
71
0
51
22
29
16
31
1.96
31411164--31411207
22
2.0
22
95
0
79
34
4
36
25
1.76
31415155--31415208
17
3.2
17
81
0
63
7
12
3
75
1.14
31421081--31421121
15
2.7
16
74
11
50
7
26
0
65
1.18
31421279--31421317
15
2.4
15
87
12
51
10
20
2
66
1.33
31422214--31422280
27
2.4
28
85
14
95
10
11
2
74
1.17
31427710--31427749
19
2.1
19
85
0
53
25
35
17
22
1.95
31430528--31430571
22
2.0
22
95
0
79
34
4
36
25
1.76
31435642--31435688
20
2.3
20
85
0
67
29
36
12
21
1.91
31436058--31436101
22
2.0
22
90
0
70
36
4
34
25
1.76
31438841--31438925
11
6.7
12
72
18
50
71
5
8
14
1.28
31438851--31438911
13
4.5
13
76
13
61
72
3
8
16
1.23
31438890--31438954
29
2.3
28
84
10
80
73
6
15
4
1.19
31441562--31441608
12
3.7
12
84
15
67
78
6
2
12
1.02
31441654--31441714
26
2.3
27
86
8
81
72
3
11
13
1.24
31442617--31442655
15
2.4
15
87
12
51
66
2
20
10
1.33
31443605--31443632
4
7.0
4
100
0
56
75
0
0
25
0.81
31444985--31445037
23
2.4
22
76
20
56
9
18
1
69
1.25
31453809--31453914
48
2.2
47
85
9
135
59
1
24
14
1.45
31455585--31455631
20
2.3
20
88
0
76
31
36
10
21
1.88
31460682--31460778
30
3.2
30
77
2
106
28
15
26
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31465944--31465991
15
3.3
15
73
5
53
31
0
25
43
1.55
31465938--31465997
29
2.1
29
90
0
93
30
0
28
41
1.56
31466975--31467019
14
3.3
14
78
6
56
48
15
0
35
1.45
31468088--31468142
28
2.0
28
100
0
110
36
12
21
29
1.91
31473945--31473982
19
2.0
19
89
0
58
28
5
10
55
1.56
31479713--31479765
23
2.4
22
76
20
56
9
18
1
69
1.25
31482612--31482663
24
2.2
24
82
6
61
7
17
3
71
1.25
31484687--31484768
30
2.7
30
73
0
83
28
17
26
28
1.97
31486504--31486536
12
2.6
13
95
4
59
78
6
9
6
1.08
31493658--31493701
22
2.0
22
95
0
79
25
36
4
34
1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253