genome.fa.s4.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  96  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30043592--30043788	54	3.6	54	85	2	261	37	16	18	27	1.92
30043592--30043768	81	2.2	81	85	2	239	37	18	17	26	1.92
30043987--30044065	27	3.0	26	82	10	79	21	21	18	37	1.94
30043999--30044067	27	2.5	28	86	9	90	23	23	17	36	1.95
30044379--30044452	27	2.8	25	84	10	85	17	24	21	36	1.95
30044576--30044726	6	24.8	6	70	17	98	20	17	13	48	1.81
30044576--30044667	25	3.8	24	80	13	116	20	19	14	45	1.85
30044582--30044661	19	4.6	19	71	23	77	21	20	13	45	1.85
30044601--30044726	30	4.2	30	84	2	171	20	16	13	49	1.79
30044762--30044832	33	2.2	33	82	5	81	25	15	28	30	1.96
30047846--30047918	38	1.9	38	88	0	110	28	27	16	27	1.97
30049271--30049407	40	3.5	40	91	3	224	24	29	22	22	1.99
30051278--30051483	38	4.9	40	75	19	195	29	24	16	30	1.96
30051320--30051453	48	2.8	48	90	1	207	30	23	15	30	1.95
30053090--30053120	15	2.0	16	93	6	55	45	6	9	38	1.63
30055829--30055900	25	2.9	24	81	8	74	25	25	18	31	1.97
30078589--30078747	44	3.7	42	77	9	169	32	27	18	20	1.97
30078584--30078748	85	1.9	85	85	8	228	33	27	18	20	1.96
30081754--30081912	43	3.7	42	79	9	160	30	28	19	21	1.97
30081805--30081917	44	2.6	42	86	6	147	32	26	20	20	1.97
30100250--30100445	46	4.2	46	74	13	168	28	18	29	23	1.98
30103368--30103481	42	2.7	42	81	9	117	29	28	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30108007--30108147	70	2.0	70	100	0	282	25	19	15	39	1.91
30108822--30108908	40	2.2	40	89	4	131	27	28	20	22	1.99
30111117--30111169	23	2.4	22	76	20	56	9	18	1	69	1.25
30121693--30121894	40	5.1	40	79	8	209	25	27	22	24	2.00
30127381--30127414	14	2.4	14	85	0	50	41	5	0	52	1.25
30129292--30129355	29	2.2	30	88	2	94	32	29	10	26	1.90
30131832--30131944	48	2.3	48	80	7	122	30	22	30	16	1.96
30137784--30137901	40	3.0	40	92	0	191	28	28	19	22	1.98
30145500--30145616	39	3.0	40	93	2	200	29	29	18	23	1.98
30154305--30154427	27	4.6	27	90	0	201	32	19	24	23	1.97
30154305--30154652	54	6.7	53	81	9	378	35	19	21	23	1.96
30154409--30154439	16	1.9	16	100	0	62	38	9	32	19	1.84
30154382--30154469	43	2.1	42	91	2	140	35	15	25	23	1.95
30154425--30154652	27	8.5	27	84	1	298	36	19	20	23	1.95
30155018--30155093	33	2.3	33	81	0	80	30	23	23	22	1.99
30155031--30155096	33	2.0	33	87	0	96	28	21	24	25	1.99
30160661--30160935	48	5.7	48	81	4	277	24	29	18	27	1.98
30160661--30160945	144	2.0	144	83	2	367	25	29	18	27	1.98
30166463--30166503	20	2.0	20	95	0	73	34	21	9	34	1.87
30166546--30166593	25	1.9	25	86	0	69	25	16	25	33	1.96
30167750--30167852	27	3.8	27	79	7	109	22	21	21	34	1.96
30167869--30167924	27	2.1	26	87	9	78	39	10	10	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30167877--30167966	27	3.3	27	79	11	76	30	6	17	45	1.74
30167925--30167976	27	1.9	27	92	0	86	25	3	23	48	1.68
30167959--30168058	27	3.7	26	82	5	119	30	8	20	42	1.80
30167961--30168073	27	4.2	27	79	4	86	32	7	17	41	1.79
30171102--30171189	23	3.8	23	90	1	140	31	19	20	28	1.97
30171248--30171288	20	2.0	20	95	0	73	34	21	9	34	1.87
30171331--30171377	24	1.9	25	86	4	69	23	17	25	34	1.96
30172535--30172613	27	2.9	27	85	9	106	22	21	21	34	1.97
30172654--30172705	27	1.9	27	88	7	79	36	11	11	40	1.78
30172662--30172751	27	3.3	27	79	11	76	30	6	17	45	1.74
30172717--30172843	27	4.7	26	81	5	137	28	8	20	42	1.81
30175863--30175982	47	2.5	48	82	9	147	27	20	20	30	1.98
30175885--30175972	23	3.8	23	92	1	140	31	19	20	28	1.97
30176031--30176071	20	2.0	20	95	0	73	34	21	9	34	1.87
30176113--30176159	24	1.9	25	86	4	69	23	17	25	34	1.96
30177305--30177381	27	2.9	28	83	11	90	24	23	19	32	1.97
30177317--30177419	27	3.8	27	75	12	93	24	21	19	34	1.96
30177436--30177487	27	1.9	27	88	7	79	36	11	11	40	1.78
30179681--30179942	47	5.6	45	75	10	192	29	19	27	24	1.98
30182621--30182673	23	2.4	22	76	20	56	9	18	1	69	1.25
30186626--30186678	23	2.4	22	76	20	56	9	18	1	69	1.25
30190487--30190527	22	1.9	22	90	5	66	12	43	26	17	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30192863--30192904	20	2.1	20	100	0	84	40	45	4	9	1.58
30194891--30194930	17	2.4	17	87	4	55	45	2	0	52	1.14
30197630--30197666	18	2.1	18	100	0	74	32	5	21	40	1.76
30204436--30204550	27	4.3	26	80	5	113	20	22	20	35	1.96
30218605--30218665	25	2.3	26	83	8	79	36	26	11	26	1.90
30218618--30218667	25	2.0	25	92	0	82	34	24	16	26	1.95
30220047--30220202	68	2.2	68	78	13	158	20	27	16	35	1.94
30221470--30221544	28	2.7	27	87	2	105	22	25	20	32	1.98
30221470--30221583	27	4.2	26	83	8	104	21	22	20	35	1.96
30223531--30223658	46	2.7	47	96	2	231	35	13	25	26	1.93
30223648--30223790	53	2.7	53	82	1	169	35	16	24	23	1.95
30225648--30225733	43	2.0	43	90	0	136	27	33	17	20	1.95
30240791--30240832	22	2.0	22	95	4	77	9	40	28	21	1.84
30246341--30246380	21	2.0	20	85	5	53	40	10	5	45	1.60
30249401--30249456	28	2.0	27	82	3	67	28	7	19	44	1.77
30251655--30251697	18	2.6	16	79	13	50	48	0	0	51	1.00
30251660--30251702	18	2.4	18	92	0	68	48	0	2	48	1.14
30251780--30251822	18	2.4	18	96	0	77	58	0	0	41	0.98
30251805--30251847	14	3.0	14	86	3	59	46	2	0	51	1.13
30251805--30251842	15	2.7	14	84	11	51	44	2	0	52	1.14
30258042--30258086	22	2.0	23	82	4	56	64	2	31	2	1.18
30262254--30262299	20	2.3	20	84	0	56	41	8	6	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30262616--30262710	50	1.9	50	86	4	138	43	13	13	29	1.83
30262773--30262830	29	2.0	29	86	0	80	36	34	6	22	1.81
30264837--30264861	5	5.0	5	100	0	50	0	0	20	80	0.72
30264867--30264945	28	2.8	28	94	1	131	20	3	12	63	1.44
30265134--30265387	131	1.9	131	91	0	409	26	17	18	36	1.94
30268736--30268775	19	2.1	19	86	9	55	25	20	12	42	1.86
30282413--30282553	47	3.0	47	87	4	205	29	13	13	43	1.82
30283353--30283465	45	2.6	45	87	8	153	23	20	28	27	1.99
30287216--30287745	89	6.0	90	80	6	573	31	19	24	23	1.98
30287220--30287745	176	3.0	176	87	1	750	31	19	24	24	1.98
30289290--30289360	19	3.4	19	74	20	70	23	8	16	50	1.73
30289299--30289376	25	3.4	25	72	20	96	21	8	17	51	1.73
30289289--30289378	44	2.0	44	97	0	171	22	8	17	51	1.73
30290455--30290781	131	2.5	127	81	7	390	27	15	20	36	1.93
30293109--30293204	48	2.0	48	97	0	183	25	13	27	34	1.93
30298492--30298612	47	2.6	45	79	6	127	31	10	31	26	1.90
30301084--30301401	40	7.9	40	95	0	555	20	21	29	28	1.98
30304986--30305062	22	3.4	22	70	10	64	32	10	31	25	1.90
30305180--30305264	40	2.2	40	84	2	109	17	20	31	30	1.95
30308046--30308209	45	3.7	45	87	6	219	25	23	27	24	2.00
30311503--30311713	46	4.5	46	81	8	205	23	28	17	30	1.97
30313847--30313973	42	2.9	44	82	3	132	24	15	25	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30318677--30318731	28	1.9	29	82	10	69	34	0	7	58	1.26
30319046--30319135	36	2.5	36	96	1	162	17	0	38	43	1.50
30319061--30319133	21	3.7	21	67	22	59	17	0	38	43	1.50
30319124--30319202	29	2.8	28	83	9	88	26	1	35	36	1.65
30319614--30319688	26	2.9	27	88	4	109	44	6	4	45	1.48
30319802--30319836	17	2.0	17	88	5	52	34	0	0	65	0.93
30320271--30320304	13	2.6	13	90	0	59	23	38	0	38	1.55
30323848--30323964	9	12.3	9	74	13	101	44	21	0	33	1.58
30323854--30323929	39	1.9	39	97	0	143	46	21	0	32	1.52
30323850--30323962	57	2.0	57	89	0	172	45	22	0	31	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253