genome.fa.s4.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  113  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35563111--35563212	39	2.6	39	78	6	107	31	27	19	21	1.97
35563143--35563229	39	2.2	39	87	0	120	27	28	20	22	1.99
35564164--35564287	49	2.5	49	92	0	203	29	26	17	25	1.98
35566381--35566495	27	4.3	27	89	5	153	34	22	22	20	1.96
35571135--35571177	21	2.0	21	100	0	86	44	32	9	13	1.76
35575704--35575855	27	5.6	27	93	3	241	26	13	28	30	1.94
35575704--35575855	55	2.8	55	94	0	259	26	13	28	30	1.94
35577646--35577828	79	2.3	81	84	7	232	23	22	28	25	1.99
35577647--35577830	40	4.6	40	83	9	216	23	22	28	25	1.99
35577699--35577863	79	2.1	79	84	6	210	25	21	27	25	1.99
35585645--35585825	39	4.7	40	83	8	214	24	22	28	25	1.99
35588518--35588700	79	2.3	81	84	7	232	24	22	27	25	2.00
35588519--35588702	40	4.6	40	83	9	216	23	22	28	25	2.00
35588571--35588735	79	2.1	79	84	6	210	25	21	27	25	1.99
35590211--35590325	27	4.3	26	87	5	122	36	20	21	20	1.95
35590235--35590324	28	3.3	28	90	4	139	35	23	21	20	1.96
35597686--35597796	42	2.6	43	81	8	113	32	28	18	20	1.96
35606874--35607044	47	3.6	46	77	11	161	25	27	16	30	1.96
35606871--35607096	94	2.4	93	85	6	296	25	28	17	28	1.97
35607752--35607776	12	2.1	12	100	0	50	60	16	8	16	1.58
35616745--35616842	43	2.3	42	82	5	117	27	20	17	34	1.95
35618026--35618089	31	2.1	31	90	0	101	28	17	7	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35619903--35619952	25	1.9	27	84	8	68	22	16	26	36	1.94
35621935--35622043	56	1.9	56	90	0	173	47	13	14	23	1.80
35624225--35624489	49	5.6	48	71	14	147	28	16	29	25	1.97
35637620--35637881	68	4.0	65	74	11	207	29	16	29	25	1.96
35649565--35649652	40	2.2	40	89	0	131	34	20	20	25	1.97
35654974--35655011	19	2.0	19	85	10	51	2	13	0	84	0.73
35654976--35655005	7	4.1	7	95	4	51	0	13	0	86	0.57
35656807--35656836	16	1.9	16	93	6	53	36	30	0	33	1.58
35657002--35657161	42	3.8	42	80	3	169	28	27	13	30	1.94
35661262--35661437	46	3.8	46	75	14	182	21	21	28	29	1.98
35661258--35661430	93	1.9	93	92	2	294	21	21	28	28	1.98
35667060--35667221	42	3.8	42	83	1	207	25	22	16	35	1.95
35670364--35670621	40	6.7	40	85	7	295	25	27	21	24	1.99
35678316--35678578	39	6.7	40	88	6	308	24	26	22	26	2.00
35678316--35678578	79	3.3	78	84	7	327	24	26	22	26	2.00
35678316--35678578	118	2.2	118	81	9	313	24	26	22	26	2.00
35681583--35681725	43	3.3	43	85	1	189	30	15	25	29	1.96
35681579--35681753	43	4.1	42	80	9	185	29	13	25	30	1.94
35684263--35684421	43	3.7	43	78	9	171	28	15	25	31	1.95
35685258--35685283	13	2.0	13	100	0	52	30	0	15	53	1.42
35690838--35691013	46	3.8	46	79	12	207	20	20	29	29	1.98
35690835--35691004	93	1.8	93	96	0	313	21	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35697045--35697220	46	3.8	46	79	12	216	20	21	29	28	1.98
35697042--35697213	93	1.8	93	96	0	317	20	21	29	27	1.98
35702481--35702530	9	5.7	9	77	13	50	64	2	0	34	1.05
35709708--35709757	3	16.3	3	95	4	91	32	0	0	68	0.90
35713351--35713403	20	2.5	20	80	17	63	50	0	1	47	1.12
35714056--35714109	24	2.2	24	86	0	72	33	1	7	57	1.37
35718753--35718812	27	2.3	27	94	2	104	16	23	25	35	1.95
35726320--35726397	28	2.8	28	76	1	68	38	19	17	24	1.93
35726534--35726597	27	2.4	27	81	5	76	17	21	23	37	1.94
35727140--35727184	23	2.0	23	95	0	81	15	20	22	42	1.89
35727147--35727248	23	4.4	23	78	7	98	23	19	19	37	1.94
35727390--35727474	20	4.3	20	87	1	118	36	5	15	42	1.71
35730408--35730577	46	3.7	45	77	17	170	28	19	30	21	1.98
35734842--35734948	40	2.7	39	85	5	126	25	26	21	27	1.99
35734885--35735068	40	4.6	40	77	9	162	28	26	20	25	1.99
35734888--35735068	80	2.3	80	82	9	201	27	26	20	24	1.99
35745988--35746171	40	4.6	40	80	10	207	25	27	22	24	2.00
35745988--35746172	79	2.3	82	83	7	229	25	27	22	24	2.00
35750679--35750765	29	3.0	29	84	1	113	27	33	16	22	1.95
35750989--35751026	16	2.4	16	86	8	51	7	23	21	47	1.77
35754810--35754839	15	1.9	16	93	6	53	6	23	0	70	1.11
35755643--35755765	47	2.6	46	79	13	135	29	17	31	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35755738--35755856	46	2.6	44	81	9	134	31	15	28	24	1.96
35762673--35762697	10	2.5	10	100	0	50	12	8	16	64	1.49
35763076--35763123	20	2.4	20	96	0	87	16	33	31	18	1.94
35767596--35767800	27	7.6	27	85	3	205	29	29	15	26	1.96
35767596--35767799	54	3.8	54	84	3	257	29	29	15	25	1.96
35767650--35767799	81	1.9	81	88	0	228	27	28	16	27	1.97
35775693--35775897	27	7.6	27	85	3	205	29	29	15	26	1.96
35775693--35775896	54	3.8	54	84	3	257	29	29	15	25	1.96
35775747--35775896	81	1.9	81	88	0	228	27	28	16	27	1.97
35784403--35784670	46	5.7	46	78	9	224	26	29	17	26	1.98
35791568--35791886	48	6.7	48	76	6	290	26	19	29	24	1.98
35791568--35791886	96	3.3	96	81	3	322	26	19	29	24	1.98
35791561--35791837	144	1.9	144	82	2	351	25	19	29	25	1.98
35791559--35791886	144	2.3	144	79	4	349	25	19	29	25	1.98
35805202--35805447	49	5.0	49	78	6	262	29	26	17	26	1.98
35805204--35805446	100	2.4	99	83	4	301	30	25	18	25	1.98
35807971--35808097	47	2.7	48	79	12	124	23	30	17	28	1.97
35811083--35811349	48	5.6	48	81	3	290	26	20	30	22	1.98
35812777--35813008	48	5.1	48	75	12	186	26	24	21	27	1.99
35812858--35812955	42	2.3	43	92	3	171	22	22	25	29	1.99
35812859--35812973	42	2.7	42	86	4	124	25	21	23	29	1.99
35816944--35816983	15	2.7	15	96	3	73	25	32	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35822080--35822153	24	3.1	24	86	0	94	33	33	12	20	1.89
35826466--35826563	40	2.5	40	83	6	119	28	12	24	34	1.91
35832635--35832843	47	4.6	48	70	16	176	31	14	22	32	1.94
35832678--35832885	84	2.5	85	89	3	330	30	14	23	31	1.94
35832678--35832916	84	2.8	83	86	4	239	30	13	23	31	1.94
35841954--35841980	13	2.1	13	100	0	54	22	29	25	22	1.99
35844261--35844295	17	1.9	19	88	11	56	54	5	14	25	1.62
35845622--35846268	27	24.0	27	82	5	655	29	21	8	40	1.83
35846278--35846473	27	7.3	27	86	0	239	34	18	20	26	1.96
35846672--35846758	27	3.3	26	85	4	93	19	21	22	35	1.96
35846876--35847019	6	23.8	6	73	17	120	20	16	13	48	1.80
35846879--35847014	24	5.6	24	80	6	150	20	16	14	47	1.82
35846876--35847014	73	1.9	73	95	0	251	20	16	14	48	1.81
35848452--35848662	47	4.7	47	82	11	271	30	15	23	31	1.95
35848494--35848697	85	2.4	85	98	0	390	29	15	25	29	1.96
35848418--35848662	132	1.9	132	88	1	375	30	15	23	31	1.95
35852126--35852283	27	5.9	27	74	7	106	39	22	7	30	1.82
35852198--35852310	54	2.1	54	80	3	120	40	23	7	29	1.80
35852212--35852419	27	7.8	27	81	5	199	40	21	9	29	1.84
35853168--35853227	27	2.3	27	85	2	77	21	23	20	35	1.96
35856532--35856719	42	4.5	42	89	0	295	22	20	25	31	1.98
35856486--35856719	84	2.8	83	84	2	297	23	20	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35858503--35858746	122	2.0	122	98	0	470	23	22	24	28	1.99
35862553--35862839	27	10.7	27	79	5	253	37	20	10	31	1.86
35862552--35862782	81	2.9	80	82	1	284	38	20	10	30	1.86
35862553--35862839	54	5.3	54	80	5	312	37	20	10	31	1.86
35862561--35862839	81	3.5	81	80	4	280	37	20	10	31	1.87
35862791--35862879	27	3.3	27	90	0	133	35	15	17	30	1.92
35871836--35871890	23	2.4	23	90	0	92	41	18	20	20	1.90
35873530--35873607	41	1.9	41	84	5	104	15	20	33	30	1.94
35877511--35877774	40	6.6	40	87	5	336	28	26	21	24	1.99
35877536--35877770	123	1.9	123	90	0	371	28	27	20	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253