genome.fa.s4.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  189  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61834393--61834569	49	3.6	49	80	5	164	28	19	27	23	1.99
61834391--61834567	98	1.8	96	83	8	232	28	19	27	24	1.98
61838606--61838843	50	4.7	50	80	3	253	31	26	15	26	1.96
61838604--61838793	101	1.9	101	89	0	299	29	24	18	26	1.98
61841848--61842006	79	2.0	79	97	0	300	23	24	10	41	1.86
61844082--61844106	13	1.9	13	100	0	50	48	16	36	0	1.46
61851967--61851998	15	2.1	16	94	5	57	37	0	0	62	0.95
61856085--61856211	28	4.6	27	74	13	116	28	14	26	30	1.95
61862197--61862417	40	5.6	40	90	3	333	23	21	25	29	1.99
61870415--61870635	40	5.6	40	88	3	324	23	21	25	29	1.99
61870415--61870635	79	2.8	79	89	4	313	23	21	25	29	1.99
61873744--61873919	46	3.8	45	81	10	212	21	21	29	28	1.98
61873740--61873911	93	1.8	93	94	0	308	20	21	30	27	1.98
61876820--61876897	15	5.4	15	77	13	83	10	17	12	58	1.61
61876811--61876893	28	2.9	28	82	10	96	10	16	15	56	1.66
61882754--61882838	35	2.4	36	75	19	90	11	2	17	68	1.31
61883431--61883463	12	2.7	13	86	13	52	39	9	3	48	1.50
61884017--61884055	20	1.9	21	89	5	62	56	7	28	7	1.55
61886886--61886979	49	1.9	49	97	0	179	34	11	14	39	1.83
61887801--61887840	13	3.1	13	88	0	62	20	30	32	17	1.95
61908003--61908045	21	2.0	21	100	0	86	51	18	9	20	1.74
61908087--61908126	20	2.0	20	100	0	80	50	25	0	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61910571--61910617	22	2.1	22	100	0	94	38	8	27	25	1.85
61911240--61911274	16	2.2	16	100	0	70	20	42	17	20	1.89
61914382--61914713	178	1.9	178	97	0	628	40	12	19	28	1.87
61924573--61924608	18	2.0	18	100	0	72	16	16	16	50	1.79
61933912--61934135	40	5.7	40	81	7	224	25	28	21	25	1.99
61933912--61934135	79	2.8	78	78	9	213	25	28	21	25	1.99
61934067--61934144	40	1.9	41	82	10	97	26	28	20	24	1.99
61940094--61940123	15	2.0	15	100	0	60	46	26	6	20	1.75
61940443--61940486	15	2.9	15	89	0	70	56	13	13	15	1.67
61956834--61956905	26	2.8	26	85	6	85	41	11	18	29	1.84
61959957--61960009	26	2.0	26	82	13	65	26	11	22	39	1.88
61961498--61961579	26	3.2	26	91	3	130	39	23	6	31	1.79
61964591--61964625	17	2.1	17	88	0	52	40	17	5	37	1.73
61965144--61965185	3	14.0	3	100	0	84	33	0	0	66	0.92
61971124--61971189	3	22.0	3	100	0	132	33	0	0	66	0.92
61971940--61971975	7	5.3	7	90	6	56	16	25	27	30	1.97
61972084--61972131	7	7.0	7	85	4	53	22	12	33	31	1.91
61973553--61973592	19	2.0	20	90	4	64	42	10	7	40	1.67
61984756--61984825	34	2.1	34	94	0	122	60	5	17	17	1.55
61989096--61989130	17	2.1	17	88	0	52	40	17	5	37	1.73
61995960--61996088	70	1.9	69	87	4	190	34	13	13	37	1.84
62003322--62003366	17	2.6	17	82	6	56	73	0	24	2	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62013274--62013337	27	2.4	27	86	0	83	40	20	23	15	1.90
62016561--62016590	11	2.7	11	94	0	51	0	13	0	86	0.57
62022158--62022302	37	3.9	37	93	0	236	24	31	20	22	1.98
62022421--62022743	47	6.6	47	89	7	484	30	28	7	33	1.84
62022471--62022556	25	3.3	25	67	32	72	33	29	4	32	1.78
62022421--62022743	96	3.3	96	91	5	533	30	28	7	33	1.84
62026211--62026238	12	2.3	12	100	0	56	17	50	17	14	1.79
62040213--62040265	24	2.2	25	83	10	65	16	5	13	64	1.47
62043793--62043929	40	3.4	40	82	4	159	38	20	16	24	1.92
62043793--62043952	80	2.0	80	80	2	178	36	21	16	26	1.94
62043834--62043952	40	3.0	40	83	2	105	35	21	16	26	1.95
62044962--62045134	46	3.7	46	79	10	208	21	20	27	29	1.98
62044959--62045129	93	1.8	93	93	0	297	21	21	28	28	1.98
62045359--62045396	19	2.0	20	85	15	53	36	0	23	39	1.55
62052083--62052253	46	3.7	46	76	12	170	22	19	27	30	1.98
62052078--62052248	93	1.8	93	87	2	254	21	19	28	30	1.97
62052478--62052515	19	2.0	20	85	15	53	36	0	23	39	1.55
62058899--62059097	42	4.7	42	75	6	177	25	16	25	32	1.96
62058899--62059097	85	2.3	85	82	5	224	25	16	25	32	1.96
62059454--62059499	21	2.2	20	84	3	56	32	6	8	52	1.58
62068292--62068317	11	2.4	11	100	0	52	30	11	19	38	1.87
62081225--62081269	23	2.0	23	82	8	56	64	0	13	22	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62100654--62100688	16	2.1	17	94	5	63	48	0	17	34	1.47
62100732--62100780	11	4.4	11	77	12	55	38	0	20	40	1.53
62104209--62104266	19	3.3	19	68	22	63	31	10	8	50	1.67
62104204--62104270	33	2.0	33	100	0	134	32	8	8	49	1.65
62107071--62107391	46	6.8	47	73	16	204	30	17	28	23	1.97
62107071--62107386	94	3.3	94	85	5	363	30	17	28	23	1.97
62107071--62107393	142	2.3	139	78	14	324	30	17	28	23	1.97
62107204--62107385	50	3.9	49	74	19	172	31	16	29	22	1.96
62110387--62110514	62	2.1	62	98	0	247	33	10	20	35	1.88
62111918--62112043	39	3.2	39	94	0	207	21	20	30	27	1.98
62111918--62112081	39	4.2	39	88	2	197	21	21	29	27	1.98
62118119--62118149	15	2.1	15	93	0	53	22	6	12	58	1.58
62120383--62120555	46	3.8	45	77	13	190	21	20	26	30	1.98
62120380--62120550	93	1.8	93	92	0	288	21	21	27	29	1.98
62137637--62137746	38	2.9	38	89	5	177	21	22	26	29	1.99
62137627--62137794	38	4.4	38	80	8	171	21	22	26	29	1.99
62145106--62145259	38	4.0	38	81	7	177	22	20	25	31	1.98
62145108--62145265	76	2.1	78	85	4	214	21	20	25	31	1.98
62151739--62151815	37	2.1	36	90	2	118	14	42	9	33	1.77
62160292--62160423	57	2.3	58	84	3	171	27	28	19	24	1.99
62160458--62160744	40	7.2	40	93	0	484	29	27	18	24	1.98
62168501--62168555	16	3.4	16	82	5	67	30	25	5	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62172091--62172137	23	2.0	23	84	8	60	42	10	21	25	1.85
62173162--62173204	7	6.1	7	78	10	52	27	2	0	69	1.00
62173162--62173200	13	2.8	13	85	11	51	25	2	0	71	0.98
62174379--62175499	228	4.9	228	92	0	1749	28	29	21	19	1.98
62174379--62175730	228	5.9	228	89	1	961	28	27	22	20	1.99
62174379--62175742	684	2.0	684	83	0	1726	28	27	22	20	1.99
62177168--62177236	30	2.3	29	82	9	77	52	7	4	36	1.49
62179272--62179414	42	3.4	43	81	1	173	32	29	15	23	1.95
62179333--62179427	42	2.3	42	84	0	118	34	25	13	26	1.93
62185172--62185214	21	2.0	21	82	8	52	30	53	0	16	1.43
62185227--62185257	15	2.1	15	93	0	53	41	35	0	22	1.54
62185213--62185311	22	4.6	21	75	9	83	43	28	2	26	1.66
62185213--62185318	21	5.0	20	73	18	72	44	27	1	26	1.65
62185412--62185497	7	12.1	7	73	7	57	41	36	1	20	1.60
62185413--62185461	22	2.2	22	85	7	64	42	32	2	22	1.65
62185412--62185489	14	5.5	14	78	4	68	43	34	1	20	1.60
62185972--62186054	39	2.1	39	82	4	96	26	20	19	33	1.96
62191576--62191702	63	2.0	63	98	0	245	33	9	21	35	1.86
62192756--62192781	3	8.7	3	100	0	52	65	0	34	0	0.93
62192914--62192986	25	2.7	27	69	25	73	50	4	4	41	1.40
62193078--62193138	32	1.9	32	93	0	104	32	1	11	54	1.46
62193353--62193400	21	2.3	21	79	10	55	68	4	0	27	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62195955--62196045	29	3.0	29	82	4	92	30	6	12	50	1.65
62196579--62196636	23	2.5	23	81	15	66	48	1	0	50	1.11
62196587--62196649	23	3.0	21	74	19	58	47	3	0	49	1.17
62201504--62201548	22	2.0	22	83	8	56	35	0	2	62	1.08
62203881--62204005	43	2.9	43	76	9	130	23	14	28	34	1.94
62205281--62205315	17	2.1	17	94	0	61	31	20	0	48	1.50
62206018--62206046	15	1.9	15	100	0	58	6	20	6	65	1.40
62206221--62206277	21	2.6	22	73	15	64	66	5	0	28	1.13
62210182--62210209	13	2.2	13	100	0	56	21	0	14	64	1.29
62210149--62210215	16	3.9	16	75	16	64	19	0	14	65	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253