genome.fa.s4.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  212  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69934372--69934396	13	1.9	13	100	0	50	0	0	8	92	0.40
69934478--69934521	18	2.5	18	88	3	63	68	2	0	29	1.02
69937479--69937518	19	2.1	19	95	0	71	15	25	15	45	1.84
69939284--69939340	30	1.9	30	100	0	114	73	7	0	19	1.05
69939379--69939441	33	1.9	32	96	3	117	0	14	9	76	1.02
69939413--69939463	20	2.5	20	87	12	68	0	11	13	74	1.07
69946505--69946564	21	2.9	20	75	5	57	21	11	33	33	1.90
69948002--69948120	46	2.6	46	87	2	159	20	18	29	31	1.96
69949518--69949622	36	2.9	35	71	10	95	32	20	23	22	1.98
69949520--69949677	72	2.2	71	84	9	214	34	20	22	23	1.97
69950187--69950294	23	4.8	23	72	3	76	37	15	9	37	1.80
69951545--69951580	17	2.2	16	90	5	54	0	19	0	80	0.71
69956453--69956483	3	10.3	3	100	0	62	32	0	0	67	0.91
69960989--69961213	111	2.0	110	91	0	360	46	16	10	27	1.79
69961903--69961939	5	7.2	5	90	3	56	75	2	0	21	0.92
69966090--69966133	12	3.6	12	84	3	61	75	0	25	0	0.81
69966092--69966136	20	2.3	19	81	7	54	75	0	24	0	0.80
69966859--69966914	16	3.5	15	75	24	53	33	1	16	48	1.56
69969610--69969655	24	1.9	24	100	0	92	63	8	4	23	1.42
69970265--69970289	8	3.1	8	100	0	50	76	0	0	24	0.80
69974703--69974912	47	4.4	47	82	4	201	23	15	28	32	1.95
69979373--69979398	5	5.2	5	100	0	52	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69985346--69985464	48	2.5	48	83	4	141	43	5	10	40	1.62
69988537--69988575	16	2.4	16	83	8	53	30	0	0	69	0.89
69991302--69991350	25	2.0	25	95	0	89	40	18	6	34	1.75
69995970--69996023	25	2.2	25	96	0	99	42	12	9	35	1.75
69999208--69999256	24	2.0	24	84	0	62	14	10	2	73	1.18
69999486--69999526	21	1.9	22	85	14	59	78	2	4	14	1.03
69999487--69999533	25	2.0	23	84	16	60	78	2	4	14	0.99
70000875--70000915	22	2.0	22	85	9	59	41	4	2	51	1.36
70001534--70001564	2	15.5	2	100	0	62	48	0	0	51	1.00
70005574--70005642	9	8.0	9	70	20	58	43	0	1	55	1.08
70005576--70005647	26	2.8	26	75	12	76	43	0	2	54	1.15
70005579--70005642	17	3.8	16	80	10	74	43	0	1	54	1.09
70005570--70005636	19	3.8	18	73	11	59	44	0	1	53	1.09
70005568--70005646	17	4.5	17	75	12	63	46	0	1	51	1.08
70006036--70006156	62	2.0	62	93	0	206	38	14	11	36	1.82
70006052--70006151	32	3.2	32	72	11	107	41	14	10	35	1.79
70006552--70006590	14	2.8	14	92	0	60	43	15	0	41	1.46
70006682--70006728	23	2.0	23	84	8	60	31	23	6	38	1.80
70007254--70007300	12	3.8	12	80	11	51	4	23	0	72	1.02
70007558--70007605	18	2.7	19	78	15	59	58	12	2	27	1.46
70009598--70009677	41	2.0	41	89	0	124	52	1	8	37	1.41
70011386--70011472	23	3.8	23	80	7	88	25	27	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70012895--70012928	17	2.1	17	88	5	52	23	0	5	70	1.09
70013543--70013575	11	2.9	12	86	13	52	66	0	0	33	0.92
70015346--70015411	30	2.2	29	86	2	87	36	15	12	36	1.84
70020285--70020311	3	9.0	3	100	0	54	33	0	0	66	0.92
70022867--70022912	24	1.9	24	82	8	58	45	23	2	28	1.65
70023450--70023489	20	2.0	20	90	0	62	65	5	0	30	1.14
70023707--70023758	26	2.0	26	84	0	68	44	1	1	51	1.23
70027700--70027751	27	1.9	27	84	7	70	25	21	17	36	1.94
70031472--70031524	18	2.9	19	81	15	67	69	3	3	22	1.20
70031472--70031531	19	3.2	17	77	15	57	68	3	3	25	1.20
70037295--70037322	13	2.2	13	100	0	56	35	25	7	32	1.83
70047496--70047531	15	2.4	15	95	0	63	41	11	5	41	1.64
70050018--70050189	46	3.7	46	92	1	265	40	13	23	22	1.89
70058712--70058826	6	19.2	6	100	0	230	50	16	0	33	1.46
70061116--70061144	14	2.0	15	93	6	51	51	20	0	27	1.47
70064558--70064621	28	2.5	24	87	10	83	53	29	0	17	1.44
70066651--70066705	23	2.4	23	78	6	58	34	1	0	63	1.05
70079084--70079111	5	5.6	5	100	0	56	17	0	0	82	0.68
70082680--70082788	8	14.0	8	70	24	74	39	0	1	58	1.09
70082679--70082791	10	12.3	9	80	9	90	40	0	1	57	1.09
70082733--70082790	5	11.6	5	100	0	116	39	0	0	60	0.97
70082848--70082876	14	2.0	15	93	6	51	62	0	37	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70084461--70084492	6	5.3	6	92	0	55	18	15	15	50	1.79
70084517--70084547	6	5.2	6	92	0	53	16	19	16	48	1.81
70092557--70092626	29	2.5	26	77	18	70	42	1	1	54	1.18
70092575--70092624	13	3.2	16	70	18	52	48	0	0	52	1.00
70092567--70092624	29	2.0	30	83	10	75	44	1	1	51	1.21
70092634--70092675	13	2.9	14	80	13	50	54	0	0	45	0.99
70092638--70092674	16	2.3	16	86	13	58	59	0	0	40	0.97
70092707--70092758	15	3.2	15	75	19	59	55	1	0	42	1.10
70101204--70101256	21	2.7	20	83	13	65	62	0	0	37	0.96
70110918--70110957	21	1.9	21	90	10	64	50	7	0	42	1.30
70115435--70115493	29	2.0	29	90	0	91	22	8	35	33	1.84
70138982--70139055	36	2.0	38	84	5	98	27	0	4	68	1.07
70141015--70141079	17	3.9	17	82	11	73	55	1	4	38	1.30
70141015--70141080	15	4.0	16	84	9	73	54	1	4	39	1.30
70145076--70145113	20	1.9	20	89	10	60	42	5	21	31	1.75
70151162--70151272	47	2.3	46	82	8	143	35	24	16	24	1.95
70152075--70152107	4	8.2	4	93	0	57	3	24	0	72	0.98
70153170--70153202	14	2.4	14	90	5	50	63	0	36	0	0.95
70155186--70155223	19	2.0	20	84	5	51	34	0	18	47	1.49
70157444--70157554	43	2.6	43	84	4	136	28	22	28	19	1.98
70157584--70157649	13	5.1	13	81	0	78	33	7	22	36	1.83
70157584--70157649	26	2.5	26	80	0	87	33	7	22	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70164306--70164330	13	1.9	13	100	0	50	72	0	28	0	0.86
70164957--70165003	24	2.0	24	84	16	62	31	0	17	51	1.46
70166274--70166311	19	2.0	20	84	5	51	34	0	18	47	1.49
70168191--70168283	41	2.3	41	94	0	159	37	13	26	21	1.91
70169065--70169108	20	2.2	20	91	0	70	20	0	31	47	1.50
70169072--70169109	13	2.8	14	84	8	51	21	0	28	50	1.49
70169141--70169185	21	2.1	21	84	8	56	24	0	24	51	1.49
70169921--70169978	28	2.2	25	84	9	71	5	41	27	25	1.76
70170337--70170824	203	2.3	209	83	8	645	25	12	21	40	1.88
70171349--70171396	20	2.4	20	96	0	87	39	6	0	54	1.26
70174987--70175025	15	2.6	15	87	0	60	30	10	15	43	1.80
70175803--70175842	16	2.5	17	84	12	57	42	5	25	27	1.75
70177608--70177828	56	3.9	57	74	14	199	29	17	20	32	1.95
70177593--70177807	111	1.9	110	91	0	349	30	15	20	33	1.94
70177826--70178068	110	2.2	108	87	7	366	28	19	16	35	1.93
70178714--70178755	19	2.2	20	95	4	77	54	4	4	35	1.42
70179699--70179744	23	2.0	24	91	4	76	32	2	0	65	1.05
70195352--70195448	40	2.4	41	84	6	119	28	15	27	27	1.96
70198563--70198593	13	2.4	13	100	0	62	32	25	12	29	1.93
70199139--70199281	76	1.9	76	86	2	207	34	24	18	23	1.96
70199157--70199289	38	3.5	38	78	2	142	34	22	18	24	1.96
70199302--70199387	22	3.9	22	84	0	118	44	27	10	17	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70200145--70200174	16	1.9	15	93	6	51	23	6	6	63	1.43
70207461--70207506	22	2.1	22	84	8	58	34	6	2	56	1.37
70210804--70210833	15	2.0	15	100	0	60	20	6	13	60	1.55
70222388--70222441	18	3.0	18	83	0	72	77	3	7	11	1.09
70222390--70222441	6	8.7	6	82	0	59	78	3	5	11	1.05
70224560--70224598	20	2.0	20	84	0	51	10	35	20	33	1.86
70242454--70242502	24	2.0	24	100	0	98	44	12	8	34	1.71
70243636--70243704	30	2.4	30	92	4	115	28	23	4	43	1.73
70248977--70249019	23	2.0	23	86	9	63	60	20	6	11	1.54
70257232--70257398	39	4.3	39	81	6	137	28	28	21	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253