genome.fa.s4.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  109  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34054678--34054821	39	3.7	39	90	0	225	20	22	27	29	1.98
34069109--34069372	48	5.5	48	83	8	317	26	28	18	26	1.98
34069109--34069374	96	2.8	96	86	2	358	26	28	18	26	1.98
34069110--34069374	144	1.8	143	87	5	392	26	28	18	26	1.98
34075326--34075456	44	3.0	43	82	6	158	24	19	28	28	1.98
34077990--34078093	42	2.5	42	95	0	181	26	25	17	30	1.97
34083741--34083770	10	3.0	10	95	0	51	26	0	3	70	1.03
34086487--34086777	38	6.9	38	72	19	204	30	15	24	29	1.95
34086513--34086724	48	4.6	48	81	12	248	32	15	23	29	1.95
34086563--34086775	85	2.5	86	90	0	338	30	15	23	29	1.96
34090015--34090056	15	2.8	15	88	0	66	16	16	14	52	1.75
34092796--34093043	48	5.4	48	80	9	241	33	13	22	30	1.93
34095304--34095385	42	2.0	42	97	0	155	37	25	13	23	1.91
34099223--34099261	20	2.1	19	85	9	53	53	17	25	2	1.56
34103355--34103383	11	2.5	12	88	11	51	75	0	17	6	1.01
34104160--34104318	44	3.7	44	80	12	195	23	18	25	31	1.98
34112599--34112821	40	5.6	39	86	6	249	24	22	27	25	2.00
34112652--34112854	79	2.6	79	82	7	202	26	21	28	24	1.99
34119834--34120289	47	9.7	47	97	1	844	31	8	29	29	1.87
34119834--34120289	233	1.9	236	96	1	855	31	8	29	29	1.87
34120407--34120485	37	2.1	37	90	0	122	24	18	31	25	1.98
34122339--34122484	43	3.4	43	100	0	292	22	15	35	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34122466--34122539	29	2.6	29	89	4	105	25	16	32	25	1.96
34122930--34123116	77	2.4	79	81	4	227	25	22	26	25	2.00
34122930--34123099	38	4.4	38	84	3	205	24	23	26	25	2.00
34126563--34126971	47	8.7	47	97	1	768	31	8	29	29	1.87
34127089--34127164	35	2.1	36	90	2	118	23	19	30	26	1.98
34130260--34130388	37	3.5	35	76	15	111	25	22	27	24	2.00
34130207--34130388	38	4.9	37	75	13	142	25	23	26	24	2.00
34135149--34135371	40	5.6	39	86	6	249	24	22	27	25	2.00
34135202--34135404	79	2.6	79	82	7	202	26	21	28	24	1.99
34143698--34144067	92	4.0	93	90	2	557	31	11	30	27	1.91
34143698--34144067	47	8.0	47	87	2	523	31	11	30	27	1.91
34143698--34144067	139	2.7	140	88	1	530	31	11	30	27	1.91
34143931--34144003	23	3.2	23	64	24	64	31	10	30	27	1.91
34143697--34144075	186	2.0	185	89	2	580	31	10	30	27	1.91
34144229--34144378	37	4.1	37	90	2	223	21	20	33	24	1.97
34144230--34144372	73	2.0	73	90	2	225	22	19	33	24	1.97
34145613--34146124	120	4.3	120	90	0	772	25	20	26	26	1.99
34145622--34146124	40	12.6	40	88	0	691	25	21	26	27	1.99
34150169--34150542	47	8.0	47	90	0	568	32	11	29	27	1.91
34150432--34150502	22	3.1	22	64	25	56	30	14	30	23	1.94
34150705--34150826	37	3.3	37	92	0	199	22	18	35	23	1.96
34156565--34156692	43	3.0	43	80	11	138	34	28	15	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34161655--34161685	11	2.7	11	95	5	53	38	25	0	35	1.56
34165951--34165988	19	2.0	19	94	0	67	47	13	0	39	1.42
34167137--34167276	56	2.5	56	85	2	190	30	14	22	33	1.93
34176200--34176452	68	3.9	64	78	11	185	24	28	16	30	1.97
34180527--34180558	12	2.7	12	100	0	64	31	6	28	34	1.82
34184137--34184444	40	7.6	40	84	6	388	26	27	22	23	1.99
34184137--34184444	83	3.8	83	90	3	468	26	27	22	23	1.99
34184137--34184444	123	2.5	120	84	6	388	26	27	22	23	1.99
34188474--34188550	23	3.3	23	81	0	100	15	12	22	49	1.78
34204016--34204078	30	2.1	31	88	8	94	9	14	15	60	1.59
34204014--34204076	15	4.2	15	82	15	85	11	12	15	60	1.59
34205462--34205616	79	2.0	79	96	0	283	42	10	23	23	1.85
34206335--34206418	28	3.2	28	62	25	74	22	16	30	29	1.96
34206279--34206519	99	2.4	101	85	2	317	24	18	28	29	1.98
34206287--34206511	49	4.5	49	86	2	288	24	17	28	29	1.97
34208994--34209049	17	3.3	17	97	0	103	32	7	32	28	1.84
34214367--34214550	40	4.6	40	85	4	244	24	22	26	26	2.00
34214373--34214525	83	1.8	83	95	0	279	22	22	29	25	1.99
34218744--34218776	16	2.1	16	94	0	57	54	6	0	39	1.25
34226783--34226911	46	2.8	46	95	0	222	20	20	28	30	1.98
34233828--34233888	30	2.0	30	87	0	86	36	9	24	29	1.88
34234311--34234485	46	3.8	46	80	10	221	22	20	27	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34234307--34234477	93	1.8	93	94	0	306	22	21	27	28	1.99
34243063--34243199	56	2.4	56	86	2	186	33	21	16	28	1.95
34244107--34244157	10	5.3	10	77	13	54	37	11	0	50	1.39
34246841--34247060	79	2.8	79	80	6	205	26	27	20	24	1.99
34246878--34247060	40	4.6	40	80	8	187	27	27	20	24	1.99
34248066--34248090	13	1.9	13	100	0	50	0	8	4	88	0.64
34256235--34256280	22	2.1	21	84	4	56	47	8	0	43	1.34
34258721--34258822	50	2.0	50	100	0	204	47	11	27	13	1.78
34260572--34260615	20	2.2	20	80	4	54	25	0	29	45	1.54
34261851--34262023	45	3.9	45	89	1	242	25	20	26	27	1.99
34268556--34268599	20	2.2	20	80	4	54	25	0	29	45	1.54
34269840--34269966	44	2.9	45	88	4	197	23	22	29	24	1.99
34271322--34271375	26	2.1	27	82	6	67	24	14	24	37	1.93
34272859--34272966	26	4.2	26	93	0	189	36	24	7	32	1.83
34283755--34283804	25	2.0	25	96	0	91	26	28	14	32	1.94
34296818--34297010	40	4.8	40	84	5	219	28	29	20	21	1.98
34296826--34297010	81	2.3	81	86	1	246	29	28	21	21	1.98
34301641--34301686	21	2.2	21	92	0	74	34	34	15	15	1.89
34304976--34305160	40	4.6	40	87	4	230	28	28	22	21	1.99
34304976--34305160	81	2.3	81	87	2	264	28	28	22	21	1.99
34307728--34307798	27	2.6	27	75	0	79	36	21	22	19	1.95
34307955--34308045	27	3.4	27	85	0	119	25	18	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34310757--34310797	17	2.4	18	80	12	50	17	26	12	43	1.84
34310764--34310797	16	2.1	17	88	5	52	17	23	11	47	1.81
34315376--34315426	18	2.8	18	80	11	50	37	5	21	35	1.78
34324928--34325094	46	3.6	45	71	20	130	28	19	28	23	1.98
34330213--34330381	43	4.0	41	74	14	137	25	16	27	30	1.97
34330213--34330360	43	3.5	43	77	9	142	25	15	27	31	1.96
34336595--34337426	417	2.0	416	96	0	1520	34	13	16	35	1.88
34354441--34354623	79	2.3	81	84	7	232	25	27	22	24	2.00
34354420--34354623	40	5.1	40	82	8	238	25	27	22	24	2.00
34362622--34362804	79	2.3	80	84	7	230	25	27	22	24	2.00
34362620--34362804	40	4.7	40	82	7	225	25	28	22	23	1.99
34367888--34368015	41	3.0	41	76	8	132	22	16	28	32	1.96
34367900--34368011	43	2.7	41	76	13	111	24	16	27	31	1.97
34391251--34391426	46	3.8	46	80	12	225	21	21	28	28	1.98
34391248--34391418	93	1.8	93	96	0	315	21	21	29	28	1.98
34398818--34398993	46	3.8	46	79	12	216	20	21	29	28	1.98
34398815--34398986	93	1.8	93	96	0	317	20	21	29	27	1.98
34401334--34401673	27	12.6	27	82	4	346	41	21	7	29	1.81
34401712--34401763	27	1.9	27	88	7	79	38	11	13	36	1.81
34401794--34401881	27	3.3	27	75	9	81	39	20	18	21	1.92
34403360--34403504	40	3.6	40	84	4	184	23	25	24	26	2.00
34416743--34416774	16	2.0	16	100	0	64	25	31	12	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34419715--34419939	40	5.7	40	90	3	341	24	20	25	30	1.98
34419715--34419972	116	2.2	119	88	3	378	24	20	25	29	1.99
34419715--34419972	40	6.6	40	88	4	330	24	20	25	29	1.99
34428191--34428463	48	5.6	48	90	0	429	33	6	27	31	1.83
34428191--34428509	96	3.3	96	92	3	502	33	7	27	30	1.85
34428141--34428562	144	2.9	142	82	7	460	33	8	27	29	1.87
34428712--34428857	37	3.9	37	92	0	229	23	19	32	24	1.98
34432344--34432604	40	6.6	40	90	2	375	23	20	25	30	1.99
34448070--34448241	43	4.0	43	78	13	165	25	19	23	31	1.98
34453149--34453414	47	5.7	46	75	12	229	22	28	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253