genome.fa.s4.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  199  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65357598--65357743	57	2.5	58	78	4	161	34	21	17	26	1.96
65359062--65359150	25	3.6	25	76	8	92	40	25	11	22	1.87
65359037--65359166	50	2.6	50	85	0	170	38	23	13	24	1.90
65359135--65359182	25	1.9	25	86	0	69	35	20	16	27	1.94
65362576--65362888	49	6.6	49	74	8	240	24	28	19	27	1.99
65362723--65362888	46	3.6	46	76	6	165	23	27	19	29	1.98
65379244--65379395	27	5.6	27	93	3	241	30	28	13	26	1.94
65379244--65379395	55	2.8	55	94	0	259	30	28	13	26	1.94
65386592--65386620	2	14.5	2	100	0	58	51	0	48	0	1.00
65389492--65389536	22	2.1	22	88	8	67	40	2	6	51	1.41
65397899--65397943	19	2.5	18	86	10	65	17	2	6	73	1.15
65400663--65400707	19	2.5	18	89	10	74	20	0	6	73	1.05
65400736--65400810	37	2.0	37	97	0	141	21	30	6	41	1.79
65400736--65400796	20	3.2	20	63	13	56	24	31	4	39	1.77
65401460--65401515	22	2.6	22	88	5	89	10	37	30	21	1.87
65401460--65401529	20	3.4	20	86	7	88	12	38	28	20	1.89
65403432--65403463	7	4.6	7	96	0	55	71	9	15	3	1.24
65403919--65403990	28	2.6	28	83	12	87	61	1	5	31	1.28
65403958--65403990	17	1.9	17	93	0	57	63	3	6	27	1.32
65404013--65404071	30	2.0	30	83	12	77	52	1	6	38	1.38
65404150--65404222	9	7.6	9	73	15	58	61	4	5	28	1.37
65404166--65404220	9	5.5	10	77	16	60	61	5	5	27	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65404166--65404235	19	3.5	19	82	7	68	55	5	5	32	1.47
65407387--65407424	19	2.1	19	85	5	60	26	0	2	71	1.00
65407436--65407491	23	2.4	23	82	5	69	28	1	1	67	1.10
65408561--65408599	19	2.1	19	90	9	62	46	2	23	28	1.65
65416074--65416105	5	6.6	5	92	7	57	81	0	0	18	0.70
65416075--65416105	9	3.3	9	95	4	53	80	0	0	19	0.71
65420305--65420336	3	10.7	3	100	0	64	34	34	0	31	1.58
65437421--65437497	29	2.7	29	91	0	118	27	28	18	25	1.98
65437736--65437791	16	3.5	16	82	0	67	10	23	21	44	1.83
65437745--65437787	8	5.4	8	82	0	59	13	25	23	37	1.92
65439295--65439342	20	2.3	20	86	10	62	54	0	22	22	1.45
65439468--65439642	81	2.1	81	96	1	323	33	6	16	43	1.75
65440570--65440609	20	2.0	20	85	0	53	22	17	5	55	1.61
65447578--65447633	20	2.8	20	76	10	60	21	19	17	41	1.91
65447609--65447767	40	4.0	40	74	3	131	22	18	21	37	1.94
65447578--65447730	80	1.9	80	86	2	218	23	18	19	38	1.93
65448994--65449034	19	2.2	19	100	0	82	48	24	9	17	1.76
65453131--65453195	32	2.0	32	100	0	130	41	18	6	33	1.75
65457585--65457674	27	3.2	27	82	7	110	32	22	24	21	1.98
65457784--65457843	28	2.1	28	87	0	84	33	10	25	31	1.89
65460313--65460353	21	2.0	22	85	9	59	34	2	29	34	1.71
65460313--65460353	22	1.9	21	85	5	55	34	2	29	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65460615--65460653	21	1.9	21	89	5	62	15	23	25	35	1.94
65463285--65463374	45	2.0	45	95	0	162	50	12	5	32	1.63
65467859--65467918	30	2.0	30	93	0	102	38	21	15	25	1.92
65469161--65469213	22	2.4	22	100	0	106	15	24	32	28	1.95
65476000--65476027	12	2.3	12	100	0	56	46	17	0	35	1.49
65476740--65476816	40	1.9	40	89	0	118	38	32	14	14	1.86
65480421--65480455	17	2.0	18	94	5	63	11	22	45	20	1.82
65486108--65486264	44	3.7	42	74	13	135	31	24	19	24	1.98
65487273--65487318	16	3.1	16	76	17	55	36	19	15	28	1.92
65496146--65496306	43	3.8	42	89	0	223	27	32	17	22	1.96
65497372--65497402	15	2.1	15	100	0	62	38	6	32	22	1.80
65497559--65497597	18	2.3	17	86	8	53	38	5	12	43	1.65
65498338--65498367	15	2.0	15	93	0	51	23	6	46	23	1.75
65501726--65501756	15	2.1	15	100	0	62	38	6	32	22	1.80
65501913--65501951	18	2.3	17	86	8	53	38	5	12	43	1.65
65504778--65504914	40	3.5	40	87	3	197	24	27	24	24	2.00
65504900--65504926	12	2.2	12	100	0	54	14	33	37	14	1.88
65504860--65504966	52	2.1	52	96	0	196	24	28	25	22	2.00
65511978--65512158	40	4.6	40	87	2	249	27	25	22	25	2.00
65514947--65514992	18	2.7	18	83	6	60	19	6	0	73	1.04
65515355--65515394	19	2.0	21	85	9	57	50	2	0	47	1.14
65515896--65515939	18	2.5	19	75	24	51	40	25	4	29	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65516127--65516386	41	6.3	41	87	2	344	17	23	23	35	1.95
65518707--65518774	27	2.5	26	79	6	73	14	22	19	44	1.86
65527104--65527185	6	13.3	6	76	19	80	48	15	17	18	1.81
65527118--65527185	25	2.7	25	93	0	118	48	16	17	17	1.81
65527400--65527451	27	2.0	26	84	3	68	34	21	26	17	1.95
65527332--65527470	67	2.0	68	86	2	190	31	20	28	19	1.97
65527695--65528052	27	13.3	27	88	0	491	25	20	18	35	1.95
65528008--65528222	81	2.7	81	81	4	211	33	7	19	40	1.79
65528034--65528224	54	3.5	54	84	1	240	34	5	18	41	1.75
65528034--65528225	27	7.1	27	82	4	208	34	5	18	41	1.75
65533502--65533532	3	10.3	3	100	0	62	32	0	0	67	0.91
65533531--65533556	3	8.7	3	100	0	52	34	30	0	34	1.58
65543880--65544032	43	3.7	44	73	14	153	27	15	24	32	1.95
65543893--65543967	37	2.0	37	89	5	116	24	13	25	37	1.91
65544009--65544078	34	2.1	34	94	0	122	35	14	20	30	1.92
65545746--65545911	81	2.0	81	95	0	296	27	23	21	28	1.99
65553122--65553204	42	2.0	42	87	0	121	31	30	15	22	1.95
65553049--65553202	84	1.8	84	81	2	193	29	27	15	26	1.96
65553245--65553385	36	3.9	37	81	8	157	24	29	18	26	1.98
65553245--65553382	73	1.9	73	86	8	201	25	29	18	26	1.98
65554262--65554303	12	3.8	12	81	18	63	38	9	23	28	1.86
65554255--65554303	21	2.3	21	100	0	98	40	10	20	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65562252--65562290	19	2.1	19	100	0	78	41	0	43	15	1.46
65564181--65564213	13	2.6	13	90	4	50	39	0	12	48	1.40
65567628--65567672	21	2.2	20	84	4	54	31	22	26	20	1.98
65569583--65569677	14	6.3	15	70	22	65	18	5	0	75	0.98
65569580--65569677	12	8.5	11	78	13	76	19	5	0	75	0.98
65569584--65569657	32	2.2	33	86	9	98	17	5	0	77	0.96
65569596--65569651	26	2.1	28	86	6	80	17	3	0	78	0.89
65569596--65569667	17	4.3	17	73	18	53	19	5	0	75	1.00
65569580--65569657	6	12.8	6	74	8	68	17	5	0	76	0.96
65569611--65569664	18	3.2	17	82	12	67	18	5	0	75	0.98
65569584--65569677	38	2.5	37	76	8	91	19	5	0	75	0.99
65572564--65572596	13	2.6	13	90	4	50	39	0	12	48	1.40
65573157--65573240	34	2.4	35	84	4	107	21	27	23	27	1.99
65583628--65583720	42	2.2	43	86	5	127	31	22	16	30	1.95
65584864--65584890	13	2.1	13	100	0	54	48	22	0	29	1.51
65589857--65590111	55	4.8	53	79	8	261	35	17	25	21	1.95
65589864--65590064	108	1.8	109	89	4	316	33	18	25	21	1.96
65595089--65595225	43	3.3	41	75	14	140	32	25	17	24	1.97
65599025--65599059	16	2.2	16	89	0	52	51	20	20	8	1.73
65599283--65599384	29	3.6	29	82	1	116	29	16	26	27	1.97
65606399--65606435	16	2.2	17	90	4	58	51	32	5	10	1.60
65607502--65607544	8	5.4	8	78	10	52	53	23	18	4	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65607502--65607544	16	2.7	16	88	0	68	53	23	18	4	1.63
65607653--65607688	18	1.9	19	88	5	56	22	16	38	22	1.93
65607756--65607869	29	4.0	28	83	8	140	26	16	29	27	1.97
65607769--65607878	57	1.9	58	88	1	168	26	17	30	25	1.97
65618426--65618609	40	4.6	40	90	3	273	26	28	23	21	1.99
65621985--65622218	55	4.4	53	74	12	205	35	17	24	22	1.95
65621992--65622192	108	1.8	110	86	4	291	33	17	25	23	1.96
65622308--65622355	23	2.0	24	88	4	71	47	10	20	20	1.79
65627328--65627409	24	3.4	24	84	5	103	32	21	14	30	1.94
65627461--65627519	20	3.0	20	97	0	109	30	20	11	37	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253