genome.fa.s4.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  130  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41279481--41279727	129	1.9	133	82	9	319	35	19	17	27	1.95
41281771--41281814	21	2.0	22	95	4	81	15	47	13	22	1.81
41283020--41283066	17	2.7	18	80	12	62	61	14	6	17	1.53
41284210--41284362	47	3.3	47	91	1	263	29	30	6	33	1.83
41297230--41297306	24	3.2	24	92	0	127	33	3	40	22	1.72
41298739--41298849	27	4.2	26	86	5	141	16	24	21	37	1.93
41303525--41303589	21	3.3	21	62	16	57	26	15	40	18	1.90
41303517--41303594	38	2.1	38	100	0	156	24	12	38	24	1.90
41313137--41313587	225	2.0	225	97	0	850	27	27	22	22	1.99
41314369--41314505	43	3.2	42	78	13	131	27	24	18	29	1.98
41317958--41318125	40	4.2	40	83	3	223	26	27	22	23	1.99
41332061--41332102	17	2.5	16	85	11	57	45	23	11	19	1.83
41343387--41343609	40	5.5	40	84	5	261	24	23	25	26	2.00
41343391--41343609	83	2.7	79	83	6	246	24	24	26	25	2.00
41351512--41351705	47	4.1	47	90	0	289	32	10	29	26	1.90
41351541--41351612	22	3.1	22	64	24	58	33	13	29	23	1.93
41351586--41351661	23	3.2	25	62	24	63	28	13	34	23	1.92
41351676--41351859	98	1.9	96	93	4	316	35	7	26	30	1.83
41351675--41351859	48	3.8	48	90	5	309	35	7	26	30	1.83
41352005--41352076	37	1.9	37	94	0	126	23	19	29	27	1.98
41353345--41353496	40	3.8	40	92	0	232	23	23	28	24	1.99
41363738--41363766	14	2.0	15	93	6	51	17	6	0	75	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41375176--41375348	47	3.7	45	85	6	220	34	12	27	26	1.92
41375228--41375303	23	3.2	25	62	24	63	28	13	34	23	1.92
41375317--41375393	37	2.1	38	95	4	140	35	7	25	31	1.85
41375359--41375489	46	2.7	46	78	17	158	36	7	26	29	1.84
41375349--41375486	51	2.8	52	82	13	184	36	7	25	30	1.83
41375353--41375510	51	3.2	49	72	16	155	33	7	28	30	1.85
41375351--41375529	97	1.8	96	84	4	243	34	9	27	28	1.88
41376966--41377156	40	4.8	40	92	1	312	23	21	29	25	1.99
41381178--41381371	47	4.1	47	90	0	289	32	10	29	26	1.90
41381207--41381278	22	3.1	22	64	24	58	33	13	29	23	1.93
41381252--41381327	23	3.2	25	62	24	63	28	13	34	23	1.92
41381342--41381525	98	1.9	96	93	4	316	35	7	26	30	1.83
41381341--41381525	48	3.8	48	90	5	309	35	7	26	30	1.83
41381671--41381742	37	1.9	37	94	0	126	23	19	29	27	1.98
41389609--41389644	10	3.6	10	96	0	63	11	11	19	58	1.62
41392184--41392222	19	2.1	19	90	0	60	48	23	5	23	1.70
41399820--41399897	40	2.0	40	92	0	129	26	29	16	26	1.97
41400991--41401026	18	2.0	18	94	0	63	11	22	25	41	1.86
41404890--41405121	43	5.4	43	93	0	401	31	32	25	11	1.91
41405097--41405142	16	2.8	16	90	3	74	23	28	34	13	1.92
41405054--41405180	59	2.2	59	91	0	209	29	30	26	12	1.93
41405011--41405223	102	2.1	102	93	0	372	30	32	25	11	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41405116--41405232	43	2.7	43	94	0	198	32	31	24	11	1.90
41404971--41405232	145	1.8	145	94	0	461	32	32	24	11	1.91
41405230--41405348	38	3.1	38	88	2	157	29	25	21	23	1.99
41411318--41411395	40	2.0	40	92	0	129	26	29	16	26	1.97
41423433--41423538	43	2.5	43	79	0	122	31	23	16	28	1.97
41425508--41425543	18	1.9	19	88	5	56	30	11	8	50	1.67
41426228--41426287	27	2.2	27	79	5	68	30	15	23	31	1.95
41428536--41428617	21	3.8	21	71	15	67	20	13	26	39	1.90
41430804--41430933	40	2.9	47	77	15	175	25	19	26	28	1.99
41430847--41430968	40	3.1	40	85	3	140	27	18	27	26	1.98
41438819--41439045	40	5.5	40	84	8	278	25	21	28	24	1.99
41444153--41444401	125	2.0	125	91	0	399	37	13	21	27	1.91
41448165--41448273	37	2.9	37	93	0	182	26	30	19	23	1.98
41448422--41448605	50	3.7	50	84	7	259	31	24	6	37	1.81
41448419--41448604	98	1.9	98	97	0	354	31	24	6	37	1.81
41448575--41448764	47	4.0	47	88	0	263	26	29	11	33	1.91
41457351--41457590	49	4.9	49	79	5	214	29	27	17	25	1.97
41457351--41457587	48	4.8	49	82	3	242	29	27	17	25	1.97
41457351--41457587	97	2.4	97	81	2	267	29	27	17	25	1.97
41457351--41457595	101	2.5	98	81	2	285	29	27	17	25	1.98
41459246--41459314	30	2.3	30	82	7	88	57	18	15	7	1.61
41459246--41459314	15	4.7	15	82	8	79	57	18	15	7	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41462314--41462536	49	4.5	49	84	3	279	29	27	17	26	1.97
41462301--41462544	100	2.5	98	83	3	312	28	27	17	26	1.98
41469379--41469524	40	3.6	41	80	7	174	26	27	21	23	1.99
41473414--41473472	23	2.6	23	83	0	64	6	25	18	49	1.72
41474991--41475186	29	6.8	29	82	3	225	18	27	15	38	1.91
41474992--41475233	87	2.8	87	85	1	315	18	26	16	38	1.92
41475987--41476065	37	2.1	37	90	0	122	25	31	18	24	1.98
41476184--41476645	49	9.6	49	94	1	794	29	28	8	33	1.87
41482328--41482857	40	13.2	40	92	2	816	26	27	20	25	1.99
41484086--41484164	37	2.1	37	90	0	122	25	31	18	24	1.98
41484283--41484862	47	12.4	47	93	1	977	28	30	8	32	1.88
41494525--41494584	30	2.0	30	83	0	75	30	21	6	41	1.79
41498457--41499846	694	2.0	694	97	0	2629	36	10	15	37	1.82
41500200--41500266	23	2.9	23	86	6	91	26	25	17	29	1.98
41500168--41500280	23	4.8	23	75	9	86	24	23	22	29	1.99
41500168--41500254	45	1.9	45	81	4	104	25	22	20	31	1.98
41502127--41502347	46	4.7	48	75	10	181	23	30	20	25	1.99
41508504--41508743	47	5.1	47	90	0	356	33	11	28	26	1.91
41508551--41508629	25	3.3	25	67	22	78	34	10	26	29	1.89
41508533--41508651	22	5.1	22	63	25	66	33	13	28	24	1.93
41508713--41508896	50	3.7	50	88	7	286	37	6	25	30	1.81
41508714--41508899	98	1.9	98	96	0	345	37	6	25	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41508713--41508920	50	4.2	50	81	13	234	35	6	27	30	1.83
41509045--41509153	37	2.9	37	93	0	173	22	17	31	28	1.97
41511947--41512131	79	2.3	81	82	7	218	24	23	27	24	2.00
41511948--41512131	40	4.6	39	80	9	194	25	23	27	23	2.00
41512000--41512164	79	2.1	79	83	6	201	26	21	27	24	1.99
41519858--41520043	40	4.6	41	79	13	183	24	23	27	24	2.00
41519858--41520043	79	2.3	81	81	9	213	24	23	27	24	2.00
41521498--41521769	40	6.8	40	95	0	481	25	22	27	24	2.00
41524757--41524903	47	3.1	47	85	0	195	32	9	29	27	1.89
41524786--41524859	23	3.1	25	62	25	59	29	13	33	22	1.93
41524873--41525056	50	3.7	50	87	7	286	36	7	26	30	1.83
41524874--41525059	98	1.9	98	97	0	354	36	6	26	30	1.83
41525204--41525312	37	2.9	37	94	0	182	22	20	30	26	1.98
41530998--41531422	216	2.0	216	93	0	735	40	14	17	28	1.88
41532004--41532028	13	1.9	13	100	0	50	8	36	40	16	1.77
41538631--41538836	55	3.8	54	75	7	166	34	16	25	22	1.95
41545693--41545937	55	4.6	54	80	11	249	37	16	24	21	1.93
41546139--41546169	16	1.9	16	93	0	53	41	0	22	35	1.54
41560427--41560604	27	6.6	27	82	5	198	26	15	28	29	1.96
41560428--41560583	82	1.9	81	88	3	233	26	15	28	29	1.96
41560424--41560604	82	2.2	81	83	2	229	27	15	28	29	1.96
41569486--41569717	100	2.3	99	86	5	301	22	28	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41569486--41569719	50	4.7	50	79	7	246	23	27	20	29	1.98
41572357--41572401	14	3.0	15	87	6	56	57	15	15	11	1.64
41575183--41575358	46	3.8	46	79	12	216	20	21	29	28	1.98
41575180--41575351	93	1.8	93	96	0	317	20	21	29	27	1.98
41582739--41582909	93	1.8	92	94	1	306	21	21	29	28	1.98
41582743--41582916	46	3.8	46	78	13	205	20	20	29	28	1.98
41585516--41585659	39	3.7	39	87	1	173	27	27	20	25	1.99
41595394--41595515	22	5.3	22	62	21	61	25	29	11	33	1.91
41595366--41595830	47	9.8	47	91	2	641	28	29	9	33	1.88
41597209--41597328	56	2.1	56	100	0	240	22	22	9	45	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253