Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  102  of  253  ( 30316 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31771843--31771880
20
1.9
20
88
0
58
13
28
23
34
1.92
31784131--31784177
20
2.3
20
85
0
67
21
12
36
29
1.91
31785843--31785948
48
2.2
48
85
9
137
14
24
1
59
1.45
31788295--31788346
22
2.4
22
75
18
54
9
19
1
69
1.26
31788295--31788348
21
2.5
21
76
14
56
9
20
1
68
1.27
31794520--31794556
18
2.1
18
90
5
58
40
0
10
48
1.38
31796372--31796413
18
2.3
19
83
4
50
50
11
4
33
1.60
31806477--31806511
18
2.0
18
88
5
54
45
2
11
40
1.55
31810082--31810122
20
2.0
22
90
9
68
73
9
4
12
1.24
31810104--31810139
17
2.1
17
90
10
56
77
5
8
8
1.11
31811137--31811206
29
2.4
29
79
13
81
61
1
22
14
1.41
31813223--31813319
30
3.2
30
68
13
74
30
28
12
27
1.93
31824540--31824588
19
2.6
18
83
6
53
8
30
2
59
1.38
31829348--31829387
19
2.2
19
86
8
57
45
7
5
42
1.54
31831772--31831818
13
3.8
12
82
5
58
76
4
6
12
1.12
31832856--31832963
6
17.7
6
68
6
65
70
3
19
6
1.25
31832860--31832918
18
3.3
18
80
0
73
71
6
16
5
1.26
31832924--31832961
13
2.8
13
82
17
51
73
0
18
7
1.06
31832925--31832975
21
2.4
21
74
6
50
74
1
17
5
1.11
31832877--31832981
27
3.8
27
71
9
77
68
2
20
8
1.29
31832978--31833040
33
1.9
33
84
12
85
53
6
26
12
1.62
31836235--31836288
20
2.7
20
82
0
63
24
20
18
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31836235--31836308
30
2.5
30
86
8
98
21
20
18
39
1.93
31836235--31836299
20
3.2
20
71
16
53
23
21
16
38
1.93
31839654--31839701
15
3.3
15
73
5
53
29
0
27
43
1.55
31839648--31839691
14
3.1
14
74
6
52
27
0
34
38
1.57
31839648--31839707
29
2.1
29
93
0
102
28
0
30
41
1.56
31843205--31843250
18
2.6
18
82
0
56
13
26
2
58
1.46
31843176--31843253
24
3.2
24
75
0
84
12
26
1
58
1.42
31844301--31844347
13
3.0
16
76
23
55
12
6
4
76
1.12
31844314--31844347
13
2.6
13
100
0
68
11
5
0
82
0.83
31844301--31844335
16
2.1
18
89
10
56
11
5
5
77
1.12
31844563--31844606
14
3.1
14
74
6
52
27
0
34
38
1.57
31845020--31845051
11
2.9
11
95
0
55
37
9
25
28
1.87
31848366--31848416
8
6.4
8
79
0
57
50
19
21
7
1.72
31848366--31848416
24
2.1
24
88
0
75
50
19
21
7
1.72
31848639--31848739
28
3.6
29
89
4
152
26
16
28
27
1.97
31848639--31848746
57
1.9
56
90
1
171
27
16
28
26
1.97
31854686--31854776
29
3.2
29
87
1
130
25
16
29
28
1.97
31855684--31855779
30
3.2
29
72
8
86
29
26
15
29
1.96
31857411--31857460
21
2.3
22
80
10
59
72
4
8
16
1.24
31858372--31858421
21
2.4
21
86
6
66
80
4
16
0
0.87
31858372--31858439
5
13.0
5
75
17
59
77
2
16
2
1.00
31858383--31858439
16
3.7
14
80
17
60
77
1
17
3
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31858501--31858556
6
9.3
6
80
0
58
73
1
17
7
1.15
31858513--31858575
24
2.6
24
84
0
81
65
0
23
11
1.25
31858508--31858589
30
2.7
30
78
0
92
67
0
21
10
1.22
31858543--31858606
18
3.6
18
78
4
58
64
0
25
10
1.26
31866997--31867038
16
2.6
16
88
0
66
80
2
14
2
0.90
31867100--31867131
12
2.7
12
90
0
55
75
0
18
6
1.01
31869292--31869388
30
3.2
31
73
5
101
27
28
15
27
1.96
31872116--31872150
14
2.6
14
95
4
63
80
0
5
14
0.89
31874377--31874418
17
2.4
18
80
7
52
57
4
23
14
1.56
31878682--31879375
376
1.8
376
97
0
1316
26
27
13
32
1.94
31880660--31880756
30
3.2
30
67
9
81
27
27
15
28
1.96
31882660--31882707
20
2.4
20
67
0
51
33
18
27
20
1.96
31885131--31885227
30
3.2
31
73
5
101
27
28
15
27
1.96
31887843--31887906
18
3.7
18
72
16
55
6
29
1
62
1.29
31890232--31890266
10
3.5
10
88
0
52
51
20
17
11
1.75
31892515--31892575
10
6.1
10
74
12
54
32
13
24
29
1.93
31892516--31892576
20
3.0
20
83
9
79
32
13
26
27
1.93
31895674--31895759
24
3.6
23
76
9
73
12
10
5
70
1.31
31897099--31897159
10
6.1
10
74
12
54
32
13
24
29
1.93
31897100--31897160
20
3.0
20
83
9
79
32
13
26
27
1.93
31903150--31903286
55
2.5
55
98
1
267
24
26
16
33
1.95
31905644--31905710
21
3.1
21
82
4
71
34
32
2
29
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31906997--31907050
22
2.5
22
77
22
60
70
1
18
9
1.23
31911421--31911451
12
2.6
12
100
0
62
25
16
12
45
1.83
31911499--31911555
16
3.7
14
77
15
51
3
19
1
75
1.04
31911523--31911566
20
2.2
20
84
12
54
0
18
4
77
0.94
31912471--31912546
12
5.6
12
72
20
53
15
5
7
71
1.28
31915607--31915670
30
2.1
30
82
5
76
23
18
17
40
1.91
31920669--31920715
20
2.3
20
85
0
67
21
12
36
29
1.91
31922385--31922490
48
2.2
48
85
9
137
14
24
1
59
1.45
31923571--31923598
11
2.5
11
100
0
56
14
0
7
78
0.95
31925080--31925126
20
2.3
20
85
0
67
21
12
36
29
1.91
31932996--31933048
23
2.4
22
76
20
56
9
18
1
69
1.25
31934298--31934375
21
3.4
23
74
8
70
26
2
30
39
1.70
31934334--31934400
21
3.1
21
82
4
80
29
2
32
34
1.73
31939826--31939885
14
4.4
14
78
4
68
15
3
5
76
1.08
31939826--31939885
28
2.2
26
88
5
84
15
3
5
76
1.08
31940530--31940586
12
4.7
12
72
10
53
63
0
19
17
1.32
31943076--31943128
23
2.4
22
76
20
56
69
1
18
9
1.25
31947124--31947184
20
3.1
19
79
9
68
27
26
13
32
1.93
31947123--31947180
10
5.7
10
72
11
55
27
29
13
29
1.94
31948534--31948559
13
2.0
13
100
0
52
76
7
0
15
0.99
31949647--31949759
27
4.1
27
71
11
97
69
3
18
7
1.27
31949703--31949752
14
3.6
14
82
12
59
74
2
18
6
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31949702--31949759
13
4.4
13
77
14
57
70
1
18
8
1.21
31951805--31951862
10
5.7
10
76
11
64
29
27
13
29
1.94
31951805--31951865
20
3.0
20
83
9
79
27
26
13
32
1.93
31953769--31953815
20
2.3
20
81
0
58
23
12
34
29
1.92
31955481--31955586
48
2.2
48
85
9
137
14
24
1
59
1.45
31958189--31958235
20
2.3
20
81
0
58
23
12
34
29
1.92
31964183--31964217
13
2.7
13
95
0
61
62
5
0
31
1.18
31964437--31964484
21
2.3
21
89
3
71
45
20
16
16
1.85
31965402--31965506
43
2.5
42
78
6
115
29
21
21
26
1.99
31965563--31965620
28
2.1
28
100
0
116
50
3
24
22
1.65
31968738--31968945
67
3.2
63
76
8
184
32
16
27
23
1.96
31974914--31974956
21
2.0
22
86
4
61
34
32
6
25
1.83
31980587--31980626
6
6.7
6
97
0
62
45
22
0
32
1.53
31980633--31980677
20
2.2
20
84
4
54
8
26
0
64
1.23
31980615--31980680
26
2.5
26
80
7
71
15
25
0
59
1.37
31981565--31981635
31
2.3
31
85
2
99
9
9
2
77
1.09
31981679--31981728
15
3.4
15
91
2
84
14
4
4
78
1.05
31983912--31983958
20
2.3
20
85
0
67
29
36
12
21
1.91
31984238--31984284
20
2.3
20
85
0
67
21
12
36
29
1.91
31986920--31986953
9
3.8
9
85
14
52
2
8
0
88
0.62
31986911--31986971
21
2.9
21
78
11
70
4
16
1
77
1.03
31989589--31989653
20
3.3
19
73
16
51
38
16
21
23
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31991432--31991494
33
1.9
33
84
12
85
12
25
6
55
1.60
31991509--31991552
18
2.4
18
84
0
61
13
18
0
68
1.22
31991512--31991577
26
2.4
26
87
10
69
12
16
0
71
1.15
31991493--31991577
44
1.9
45
83
7
111
11
17
1
69
1.25
31992667--31992695
11
2.6
11
100
0
58
17
0
6
75
1.01
31992766--31992797
11
2.8
12
95
4
57
6
3
6
84
0.86
31994307--31994371
20
3.3
19
73
16
51
38
16
21
23
1.93
31994845--31994891
20
2.3
20
85
0
67
21
12
36
29
1.91
32001961--32002012
23
2.3
22
75
21
54
9
23
1
65
1.32
32005828--32005871
21
2.0
22
86
4
63
34
34
6
25
1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253