genome.fa.s4.2.7.7.80.10.50.1000.226.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  226  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74026826--74026856	14	2.2	14	94	0	53	61	0	16	22	1.34
74026881--74026959	4	19.2	4	77	10	70	65	5	26	2	1.26
74026865--74026959	50	1.9	50	97	0	181	62	7	27	3	1.37
74029162--74029228	9	7.7	9	72	12	50	32	8	1	56	1.39
74031965--74032007	21	2.0	21	100	0	86	48	13	13	23	1.79
74033420--74033470	15	3.6	14	77	12	52	74	1	3	19	1.07
74035283--74035312	13	2.3	13	94	0	51	36	26	0	36	1.57
74035406--74035718	46	6.8	46	91	1	430	21	24	14	40	1.90
74040789--74040830	10	4.3	10	81	3	50	7	0	14	78	0.95
74040780--74040825	19	2.4	19	85	7	58	8	0	10	80	0.91
74041811--74041846	18	2.0	18	89	10	56	55	0	0	44	0.99
74043989--74044015	11	2.5	11	100	0	54	40	25	7	25	1.82
74048680--74048770	44	2.1	44	93	0	155	28	30	20	19	1.97
74050180--74050226	24	2.0	24	95	0	85	31	23	17	27	1.96
74052744--74052770	5	5.4	5	100	0	54	81	0	0	18	0.69
74054720--74054790	32	2.2	32	80	5	81	29	4	15	50	1.63
74056039--74056080	17	2.6	16	88	3	57	52	0	0	47	1.00
74056171--74056201	14	2.2	14	94	0	53	38	19	9	32	1.84
74057493--74057563	37	1.9	37	91	0	115	29	29	18	22	1.97
74057683--74058044	47	7.6	47	94	1	573	29	29	7	32	1.85
74057683--74058044	98	3.8	96	92	3	581	29	29	7	32	1.85
74058269--74058411	40	3.6	40	84	7	175	25	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74060463--74060727	132	2.0	132	100	0	530	27	22	9	40	1.84
74062693--74062738	20	2.3	20	84	0	56	19	0	21	58	1.39
74064288--74064334	23	2.1	23	96	4	87	36	8	17	38	1.80
74065425--74065463	20	2.0	20	89	0	60	23	0	2	74	0.94
74073655--74073685	14	2.2	14	94	0	53	58	6	3	32	1.40
74073641--74073674	18	1.9	17	88	5	50	67	5	0	26	1.13
74074163--74074334	84	2.0	84	96	0	317	41	16	11	30	1.83
74076123--74076206	31	2.6	31	81	14	100	39	3	5	51	1.44
74076514--74076566	24	2.3	23	83	9	63	47	1	0	50	1.12
74079581--74079750	43	4.0	42	81	3	155	35	24	12	27	1.92
74079584--74079740	86	1.8	85	84	9	212	33	24	14	27	1.94
74086760--74086871	19	5.8	19	85	9	147	36	10	16	36	1.83
74086750--74086874	36	3.4	37	83	9	116	36	10	16	36	1.82
74089548--74089595	3	16.0	3	86	0	69	0	27	6	66	1.15
74089851--74089892	22	1.9	22	90	0	66	9	4	45	40	1.58
74090903--74091086	92	2.0	92	100	0	368	46	14	16	22	1.82
74091169--74091226	20	2.8	20	81	2	71	24	6	10	58	1.55
74091478--74091626	21	7.1	20	72	17	79	19	8	14	58	1.60
74091474--74091571	20	4.8	20	73	15	67	18	11	14	56	1.67
74091474--74091611	21	6.5	21	72	14	86	18	10	13	57	1.64
74091544--74091645	45	2.3	44	84	1	123	23	5	13	56	1.59
74098968--74099086	44	2.8	41	81	11	123	24	15	26	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74104975--74105019	22	2.2	20	84	15	56	71	0	8	20	1.12
74108184--74108208	9	2.8	9	100	0	50	52	0	0	48	1.00
74109822--74109893	35	2.1	35	97	0	135	43	6	8	41	1.62
74110841--74110884	6	7.3	6	81	0	52	63	13	2	20	1.40
74110838--74110884	24	2.0	24	91	0	76	59	12	4	23	1.51
74110864--74111155	146	2.0	146	85	3	390	39	13	12	35	1.82
74112256--74112299	21	2.2	20	83	4	52	59	2	11	27	1.44
74114669--74114700	10	3.3	10	95	4	57	62	0	6	31	1.20
74114688--74114731	17	2.4	18	77	14	54	56	9	0	34	1.31
74114696--74114760	28	2.3	27	76	10	67	49	10	0	40	1.38
74114726--74114756	16	1.9	16	93	0	53	38	9	0	51	1.35
74116595--74116656	30	2.1	30	96	0	115	45	0	16	38	1.47
74118085--74118126	18	2.3	19	80	16	52	28	30	0	40	1.57
74119468--74119529	28	2.1	28	91	5	97	50	6	1	41	1.38
74124805--74124833	13	2.3	13	94	5	51	20	48	24	6	1.74
74133633--74133660	5	5.6	5	100	0	56	17	0	0	82	0.68
74156895--74156932	10	3.6	11	79	13	53	71	0	0	28	0.87
74156892--74156931	20	2.0	20	100	0	80	65	0	0	35	0.93
74156890--74156941	22	2.4	21	87	3	68	63	0	1	34	1.06
74156858--74156926	35	2.0	35	85	0	93	55	1	0	43	1.08
74159775--74159819	22	2.0	23	86	4	65	37	22	4	35	1.74
74160008--74160032	6	4.2	6	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74160581--74160692	48	2.3	47	86	8	154	37	8	3	50	1.51
74161682--74161714	7	4.7	7	92	0	57	30	0	12	57	1.35
74162308--74162351	18	2.4	18	88	0	61	22	25	9	43	1.82
74165830--74166209	126	3.0	126	87	1	541	29	18	15	36	1.92
74166748--74166817	19	3.8	19	83	11	101	44	21	0	34	1.53
74166889--74166938	22	2.3	22	92	0	82	50	30	0	20	1.49
74170642--74170756	45	2.5	47	80	8	137	24	20	19	35	1.95
74170652--74170756	23	4.6	23	78	8	106	24	20	19	36	1.95
74178248--74178330	23	3.6	23	77	6	69	25	21	20	32	1.98
74181395--74181456	20	3.3	20	66	25	62	32	11	25	30	1.91
74181398--74181471	36	2.1	36	100	0	148	35	10	24	29	1.89
74184664--74184724	30	2.0	30	87	0	86	40	4	24	29	1.76
74191697--74191804	26	4.2	26	90	0	171	36	23	8	32	1.84
74193602--74193726	19	6.5	19	69	2	79	16	15	30	38	1.89
74193593--74193721	58	2.2	58	85	0	177	16	16	29	37	1.90
74200391--74200447	29	1.9	30	85	3	80	56	19	3	21	1.57
74201162--74201282	55	2.2	55	81	0	143	14	18	33	34	1.90
74203129--74203410	18	15.2	18	71	12	106	36	14	12	37	1.83
74203208--74203410	36	5.6	36	76	8	153	36	13	12	37	1.83
74203208--74203395	54	3.5	53	73	11	125	36	14	12	37	1.83
74203208--74203410	72	2.8	71	77	6	196	36	13	12	37	1.83
74203611--74203644	6	5.5	6	86	6	50	44	17	20	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74203609--74203644	12	2.8	13	91	4	56	41	19	22	16	1.90
74203760--74203793	16	2.1	16	89	10	52	35	8	0	55	1.31
74205357--74205419	28	2.2	28	91	0	99	31	30	6	31	1.83
74210783--74210845	28	2.2	28	91	0	99	31	30	6	31	1.83
74211499--74211562	24	2.8	23	81	9	60	35	14	6	43	1.70
74218260--74218397	72	1.9	72	83	2	179	30	16	19	33	1.94
74219064--74219142	38	2.1	38	100	0	158	37	5	21	35	1.76
74220278--74220313	16	2.2	17	90	5	56	50	0	8	41	1.33
74220289--74220338	14	3.4	15	76	20	52	52	0	2	46	1.12
74225987--74226231	50	4.9	50	81	5	291	28	25	18	26	1.98
74226043--74226123	26	3.2	26	64	30	66	30	28	14	25	1.95
74225986--74226230	99	2.5	98	82	4	305	28	26	18	26	1.98
74226879--74226938	30	2.0	30	87	6	86	28	25	6	40	1.80
74235261--74235294	12	2.8	12	86	0	50	23	50	17	8	1.74
74236640--74236672	15	2.3	15	89	5	50	24	6	3	66	1.28
74236768--74236814	22	2.2	21	88	3	67	68	0	0	31	0.90
74243365--74243404	18	2.2	18	90	0	62	25	10	10	55	1.64
74289523--74289571	25	1.9	26	88	12	75	61	0	0	38	0.96
74293250--74293451	103	2.0	103	97	0	386	32	18	21	28	1.97
74295724--74295790	24	2.9	22	71	20	55	40	35	8	14	1.78
74297083--74297130	20	2.4	21	82	10	64	68	6	0	25	1.12
74303301--74303426	41	3.1	41	81	3	148	26	20	13	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74303577--74303678	8	13.6	7	94	3	132	25	0	4	68	1.15
74303577--74303679	30	3.4	30	91	4	145	25	0	4	68	1.15
74304558--74304601	19	2.2	20	88	11	65	25	4	2	68	1.20
74304670--74304698	7	4.3	7	95	4	51	34	37	0	27	1.57
74305204--74305332	56	2.3	55	81	9	154	17	0	34	47	1.54
74305340--74305450	40	2.8	39	89	5	159	18	23	23	34	1.96
74316593--74316622	11	2.8	11	95	5	53	83	0	0	16	0.65
74317053--74317101	22	2.2	22	82	10	55	22	12	6	59	1.55
74318210--74318237	14	2.0	14	100	0	56	50	7	7	35	1.57
74320436--74320469	17	2.0	17	100	0	68	35	5	29	29	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253