Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  174  of  253  ( 30316 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56470120--56470283
89
1.8
89
85
0
229
29
26
17
25
1.98
56472034--56472085
24
2.2
24
85
0
68
51
7
3
36
1.49
56481396--56481420
12
2.1
12
100
0
50
44
0
8
48
1.32
56481739--56481907
43
3.9
43
79
6
198
24
17
26
31
1.97
56481753--56481901
42
3.5
41
80
6
118
25
18
26
29
1.98
56488238--56488284
10
4.6
10
85
12
51
61
4
0
34
1.15
56489822--56489851
12
2.5
12
94
0
51
46
0
6
46
1.29
56489933--56489979
16
2.7
17
80
9
51
63
4
0
31
1.13
56489936--56489984
17
2.7
19
78
15
59
61
8
0
30
1.25
56490197--56490278
3
27.3
3
72
18
57
65
1
3
29
1.17
56490197--56490278
11
7.4
11
74
17
71
65
1
3
29
1.17
56490213--56490279
27
2.5
28
76
13
70
67
1
4
26
1.19
56490197--56490275
24
3.4
24
70
21
69
65
1
3
29
1.17
56490610--56490650
21
2.0
20
95
4
73
68
26
0
4
1.10
56490606--56490657
23
2.3
22
86
3
68
63
28
0
7
1.22
56490612--56490680
21
3.2
21
83
8
68
59
28
1
10
1.39
56491486--56491931
44
10.1
45
73
6
302
30
25
17
27
1.97
56491546--56491936
132
3.0
132
95
0
710
30
25
16
27
1.97
56505028--56505258
27
8.6
27
86
5
279
29
27
14
27
1.95
56508098--56508140
16
2.7
16
82
7
52
62
4
0
32
1.15
56508359--56508444
3
29.3
3
73
19
60
66
1
3
29
1.16
56508364--56508444
18
4.4
18
77
13
76
66
1
3
28
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56508776--56508814
19
2.0
20
90
5
62
69
25
0
5
1.09
56508771--56508846
22
3.4
22
83
7
82
60
27
1
10
1.38
56513770--56513874
3
35.7
3
75
5
81
59
1
7
31
1.37
56514142--56514210
3
24.0
3
72
8
54
60
2
5
30
1.34
56514142--56514218
26
3.3
23
68
12
57
59
2
6
31
1.36
56514275--56514357
12
7.0
12
70
16
57
61
0
12
26
1.31
56514313--56514401
12
7.7
12
69
14
53
53
2
15
28
1.54
56514567--56514601
3
11.7
3
100
0
70
65
0
0
34
0.93
56521807--56521832
5
5.2
5
100
0
52
57
0
0
42
0.98
56529780--56529877
3
33.3
3
77
6
76
65
0
7
27
1.19
56529804--56529888
15
5.6
16
75
18
76
68
0
5
25
1.12
56529805--56529904
29
3.3
28
76
20
96
70
0
6
24
1.10
56529781--56529875
23
3.8
23
76
16
82
66
0
7
26
1.18
56529945--56529978
8
4.1
8
85
7
50
88
0
0
11
0.52
56530042--56530074
3
11.0
3
100
0
66
66
0
0
33
0.92
56530722--56530760
17
2.4
17
91
4
62
84
0
7
7
0.77
56538380--56538432
26
2.0
26
82
7
63
26
15
20
37
1.92
56539921--56539976
26
2.2
26
100
0
112
35
26
7
30
1.83
56543285--56543457
93
1.9
93
95
0
310
27
30
21
20
1.98
56543278--56543453
46
3.8
46
79
10
205
28
29
21
20
1.98
56543286--56543472
46
4.0
46
73
15
145
28
29
20
20
1.98
56548104--56548153
26
1.9
27
84
8
68
24
16
22
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56549520--56549575
26
2.2
26
96
0
103
35
25
7
32
1.83
56550049--56550079
13
2.4
13
100
0
62
29
0
19
51
1.47
56551196--56551352
42
3.7
43
81
4
165
22
19
29
29
1.98
56551185--56551352
43
3.9
44
79
4
182
22
17
28
30
1.97
56555606--56555728
43
2.9
43
85
2
158
24
17
27
30
1.97
56555612--56555768
43
3.7
41
77
10
138
26
15
27
29
1.96
56561154--56561261
3
36.3
3
73
1
74
28
9
1
60
1.38
56561154--56561261
15
7.3
15
78
2
101
28
9
1
60
1.38
56561183--56561269
29
3.0
29
80
5
88
27
10
3
58
1.47
56565771--56565840
15
4.7
15
81
0
86
57
17
15
10
1.65
56565762--56565840
30
2.6
30
75
4
86
55
16
16
11
1.68
56565802--56565845
15
2.9
15
93
0
70
54
18
11
15
1.70
56567518--56567560
19
2.3
19
84
4
61
16
34
27
20
1.94
56567553--56567586
13
2.6
13
90
0
59
5
41
26
26
1.78
56571673--56571737
32
2.0
32
100
0
130
35
15
6
43
1.72
56571760--56571791
16
2.0
16
100
0
64
37
6
12
43
1.68
56573711--56573832
43
2.9
43
82
6
167
28
22
16
31
1.96
56580923--56581036
42
2.7
43
78
9
135
24
17
25
32
1.97
56585911--56585967
29
2.0
29
100
0
114
24
17
21
36
1.94
56588357--56588462
43
2.5
43
77
7
117
30
16
22
30
1.96
56591794--56592021
40
5.7
40
89
3
352
25
26
22
25
2.00
56591761--56592017
80
3.2
80
90
3
369
24
26
22
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56605551--56605676
39
3.2
39
90
0
189
21
19
30
28
1.98
56605551--56605694
78
1.8
78
82
2
182
21
21
29
27
1.99
56605551--56605694
39
3.7
39
87
1
155
21
21
29
27
1.99
56612441--56612554
43
2.7
42
82
6
140
30
25
14
28
1.95
56614512--56614543
16
1.9
17
93
6
57
37
6
6
50
1.53
56617579--56617628
20
2.5
20
80
0
55
24
12
22
42
1.87
56618868--56618921
25
2.2
25
86
3
74
20
22
5
51
1.67
56621293--56621342
26
1.9
26
84
8
66
6
12
12
70
1.34
56621563--56621609
14
3.4
14
77
16
62
48
10
17
23
1.77
56621557--56621609
27
2.0
27
100
0
106
43
11
18
26
1.84
56625172--56625347
46
3.8
46
77
7
203
29
28
20
21
1.98
56625180--56625350
93
1.8
93
93
0
297
28
28
21
21
1.98
56632747--56632916
45
3.8
46
69
20
144
30
27
21
21
1.98
56665254--56665477
104
2.2
104
93
1
378
17
19
31
31
1.95
56665507--56665558
26
2.0
26
92
0
86
15
21
34
28
1.94
56665396--56665546
72
2.1
72
91
2
243
23
16
29
30
1.96
56670026--56670287
46
5.6
46
75
13
189
30
17
27
25
1.97
56670210--56670345
49
2.7
50
80
8
170
26
20
27
25
1.99
56670816--56670897
40
2.0
40
100
0
164
34
14
17
34
1.90
56685190--56685221
13
2.3
15
89
10
50
71
0
15
12
1.14
56689994--56690062
16
4.3
16
70
17
54
21
0
20
57
1.40
56693056--56693089
10
3.4
10
87
0
50
29
2
11
55
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56697948--56697981
13
2.6
13
100
0
68
23
32
23
20
1.98
56702058--56702106
22
2.2
22
96
0
89
20
14
26
38
1.91
56704661--56705059
196
2.0
196
97
0
755
38
17
13
30
1.88
56708051--56708079
13
2.2
13
100
0
58
44
0
31
24
1.54
56713862--56714022
80
2.0
80
98
0
313
35
11
22
30
1.90
56721183--56721218
11
3.3
11
88
0
54
16
2
0
80
0.83
56721182--56721220
16
2.4
16
91
0
60
17
5
0
76
0.96
56731770--56731818
21
2.4
19
77
12
53
53
10
2
34
1.47
56733852--56733883
5
6.8
5
96
3
50
65
0
12
21
1.25
56734694--56734756
30
2.1
30
87
0
90
22
34
20
22
1.96
56741757--56741789
16
2.1
16
94
0
57
18
21
6
54
1.64
56743313--56743358
16
2.9
16
90
3
67
19
28
0
52
1.47
56745615--56745680
29
2.3
29
84
5
80
36
28
3
31
1.73
56749652--56749703
25
2.1
25
100
0
104
51
11
17
19
1.75
56757965--56758001
18
2.1
18
89
0
56
43
8
18
29
1.79
56761897--56761921
7
3.6
7
100
0
50
60
12
0
28
1.32
56762847--56762898
25
2.1
24
86
10
70
69
3
0
26
1.06
56763068--56763136
30
2.3
30
89
0
102
39
4
26
30
1.75
56767726--56767932
75
2.8
75
88
2
292
34
22
15
27
1.94
56771920--56772146
120
1.9
120
81
5
280
28
17
18
36
1.93
56776527--56776620
42
2.3
41
87
7
129
69
4
9
17
1.32
56777055--56777145
44
2.1
44
89
4
139
23
15
21
39
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56778963--56779074
56
2.0
56
84
5
145
42
7
20
29
1.78
56779061--56779149
7
13.1
7
91
5
148
73
0
12
14
1.11
56778974--56779088
56
2.1
55
81
4
133
47
6
16
29
1.70
56781508--56781552
22
2.0
22
95
0
81
20
26
11
42
1.85
56796647--56796742
34
2.8
35
82
1
113
20
23
26
29
1.99
56801073--56801248
46
3.8
46
79
14
209
20
20
29
29
1.98
56801070--56801241
93
1.8
93
95
2
310
20
20
29
28
1.98
56805970--56806017
23
2.0
24
96
4
89
35
12
8
43
1.73
56810113--56810190
40
2.0
40
86
0
111
32
33
15
19
1.93
56815924--56815974
26
2.0
26
96
0
93
29
35
23
11
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253