genome.fa.s4.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  156  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50177460--50177497	20	1.9	20	84	10	51	34	13	10	42	1.78
50178712--50178845	57	2.4	57	84	0	178	34	20	15	29	1.94
50178750--50178863	57	2.0	57	81	3	131	35	21	15	27	1.94
50182101--50182154	26	2.0	27	96	3	101	22	22	7	48	1.75
50182060--50182193	72	1.9	72	90	3	216	20	23	12	44	1.85
50182128--50182295	46	3.7	46	94	0	284	23	24	11	40	1.88
50193049--50193073	13	1.9	13	100	0	50	24	32	24	20	1.98
50211570--50211751	78	2.3	81	83	8	223	24	28	23	24	2.00
50211549--50211751	40	5.1	40	81	9	229	24	28	22	24	2.00
50220392--50220655	40	6.8	39	83	7	281	24	29	21	24	1.99
50220372--50220651	113	2.4	111	88	7	362	25	29	21	23	1.99
50223675--50223703	14	2.1	14	100	0	58	37	41	6	13	1.72
50228627--50228898	40	6.8	40	87	2	368	25	27	21	25	1.99
50228607--50228888	120	2.4	120	95	0	494	26	28	20	24	1.99
50239899--50239938	21	1.9	21	85	10	55	25	17	27	30	1.97
50249225--50249426	40	5.1	40	90	2	300	23	21	27	27	1.99
50255533--50255611	37	2.1	37	88	4	115	25	30	18	25	1.98
50255730--50256263	47	11.4	47	93	2	869	29	29	8	32	1.88
50267216--50267379	49	3.3	49	85	2	222	30	26	16	26	1.97
50267573--50267656	43	2.0	43	95	0	150	33	22	5	38	1.79
50271061--50271206	73	2.0	73	100	0	292	26	15	16	42	1.87
50275083--50275162	34	2.4	34	85	4	99	25	26	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50279329--50279401	29	2.5	29	88	4	103	26	31	16	26	1.96
50288087--50288272	40	4.7	40	88	5	243	26	27	22	24	2.00
50373637--50373821	40	4.7	40	80	6	207	23	21	27	27	1.99
50373638--50373819	79	2.3	81	80	7	212	24	21	27	26	1.99
50373638--50373844	79	2.6	79	76	12	210	25	21	27	26	1.99
50377415--50377492	39	2.0	39	100	0	156	30	17	17	33	1.94
50394269--50394320	24	2.2	24	100	0	104	28	13	7	50	1.69
50395940--50395991	24	2.2	24	100	0	104	28	13	7	50	1.69
50398538--50398583	22	2.0	22	83	4	56	23	17	23	34	1.96
50399460--50399487	13	2.2	13	100	0	56	50	0	7	42	1.30
50422361--50422412	27	1.9	27	88	0	77	26	21	40	11	1.87
50422508--50422559	5	10.8	5	86	12	56	67	0	32	0	0.91
50422519--50422562	18	2.4	19	92	3	72	72	0	27	0	0.85
50422547--50422628	39	2.0	40	95	4	148	43	4	12	39	1.63
50422670--50422714	23	2.0	23	86	0	63	17	0	15	66	1.25
50422768--50422819	27	1.9	27	96	0	95	42	1	15	40	1.58
50428400--50428446	22	2.1	22	100	0	94	46	17	0	36	1.48
50429952--50430061	43	2.5	42	78	8	114	29	25	19	26	1.98
50433359--50433470	37	3.0	37	93	0	188	26	30	18	24	1.98
50433674--50434160	47	10.1	47	86	6	650	26	30	12	30	1.92
50433674--50434160	98	5.0	98	91	4	765	26	30	12	30	1.92
50438135--50438572	40	10.8	40	88	3	617	26	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50438135--50438540	127	3.3	127	86	5	563	27	27	21	24	1.99
50438135--50438573	167	2.7	163	87	3	634	26	27	20	24	1.99
50439805--50439916	37	3.0	37	94	0	188	27	30	16	25	1.97
50440120--50440542	47	9.1	47	74	13	381	26	29	12	31	1.92
50440196--50440259	31	2.1	31	96	0	119	21	28	17	32	1.96
50440150--50440312	78	2.0	81	88	7	242	24	27	14	33	1.94
50440231--50440520	51	5.8	50	85	8	405	27	29	12	30	1.93
50440227--50440542	97	3.2	98	95	1	562	27	29	12	30	1.93
50446957--50447108	32	4.7	33	78	6	112	34	11	23	29	1.91
50448062--50448094	13	2.5	14	85	14	52	3	27	39	30	1.72
50450125--50450369	40	6.2	40	92	2	379	25	28	22	24	1.99
50452440--50452486	21	2.2	21	96	0	85	38	10	27	23	1.88
50459658--50459689	12	2.7	12	100	0	64	6	34	28	31	1.82
50462082--50462185	37	2.8	37	94	0	181	25	30	20	23	1.98
50462357--50462665	48	6.4	48	96	0	564	30	28	7	33	1.85
50468563--50468779	46	4.7	46	82	4	235	24	28	20	26	1.99
50471662--50471833	93	1.8	93	94	0	308	27	30	21	20	1.98
50471654--50471829	46	3.8	46	81	10	214	28	29	21	21	1.98
50474207--50474295	30	3.0	30	80	8	101	57	15	16	10	1.65
50474207--50474286	15	5.4	15	80	7	92	58	13	17	10	1.62
50474218--50474295	15	5.2	15	78	9	79	56	15	16	11	1.67
50479587--50479653	25	2.7	24	78	17	73	50	11	17	19	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50479771--50479850	26	3.0	27	82	10	94	38	21	22	17	1.93
50480003--50480068	22	3.0	22	76	8	71	33	22	24	19	1.97
50480474--50480723	27	9.3	27	85	1	259	24	18	19	36	1.94
50480492--50480723	81	2.9	81	86	3	297	24	18	19	37	1.94
50480707--50480910	27	7.7	26	76	9	171	30	10	19	40	1.84
50480709--50480848	53	2.6	53	88	0	208	32	10	16	40	1.83
50480707--50480910	80	2.6	78	80	7	223	30	10	19	40	1.84
50482871--50482905	18	1.9	18	100	0	70	57	5	14	22	1.59
50482889--50482951	25	2.5	25	89	0	99	47	11	19	22	1.80
50483073--50483135	27	2.4	26	82	10	74	41	17	20	20	1.91
50483311--50483376	22	3.0	22	78	8	80	34	22	22	19	1.96
50483782--50484030	27	9.3	27	80	2	241	24	20	18	37	1.94
50483783--50484016	81	2.9	81	83	0	290	24	21	17	35	1.95
50483782--50484140	27	13.4	27	74	7	214	27	17	17	38	1.92
50484018--50484196	27	6.7	27	80	3	184	31	9	17	40	1.82
50484018--50484155	53	2.6	53	94	0	231	33	9	15	42	1.79
50484025--50484217	80	2.4	79	81	5	219	31	9	19	39	1.84
50486172--50486206	18	1.9	18	94	0	61	57	8	14	20	1.63
50486190--50486252	25	2.5	25	92	0	99	49	9	17	23	1.76
50486374--50486453	26	3.0	27	80	10	85	40	21	21	17	1.92
50486612--50486677	22	3.0	22	76	8	71	34	19	22	22	1.96
50487105--50487437	27	12.4	27	79	5	239	27	17	17	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50487104--50487353	81	3.1	81	88	0	338	24	20	18	36	1.94
50487341--50487466	53	2.4	53	90	0	189	34	11	14	39	1.81
50487337--50487519	80	2.3	81	82	6	221	33	10	18	37	1.85
50487337--50487519	27	6.9	27	77	3	174	33	10	18	37	1.85
50493576--50493666	46	2.0	46	82	0	110	29	30	5	34	1.80
50493680--50493971	47	6.2	47	90	0	440	26	28	11	33	1.91
50496924--50497033	43	2.5	42	82	8	132	30	28	16	24	1.96
50514534--50514652	55	2.3	51	80	5	130	24	29	31	15	1.95
50522107--50522156	15	3.4	15	86	2	66	60	12	18	10	1.59
50522118--50522165	15	3.2	15	79	5	53	56	14	16	12	1.68
50537010--50537035	13	2.0	13	100	0	52	15	30	38	15	1.88
50541646--50541772	64	2.0	64	95	0	227	40	6	7	45	1.58
50542257--50542325	33	2.1	33	91	0	111	21	18	40	18	1.91
50542266--50542331	33	2.0	33	93	0	114	24	18	39	18	1.92
50544474--50544718	40	6.2	40	92	2	379	26	28	22	23	1.99
50550320--50550574	40	6.4	40	90	2	363	26	27	22	23	1.99
50555651--50555703	27	2.0	27	84	0	70	41	9	9	39	1.70
50562613--50562733	46	2.6	46	85	5	154	27	20	28	23	1.99
50562616--50562881	49	5.6	47	76	10	190	26	20	28	24	1.99
50562616--50562873	142	1.8	138	82	9	326	27	19	29	24	1.99
50571208--50571580	48	7.8	48	92	0	593	34	6	27	31	1.82
50571624--50571726	37	2.8	37	95	0	188	21	20	32	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50573679--50573976	40	7.4	40	91	0	461	23	21	28	25	1.99
50574759--50575006	126	2.0	124	78	7	259	32	15	21	30	1.94
50576683--50576763	40	2.0	40	90	4	128	23	20	28	27	1.99
50675016--50675240	46	4.9	45	72	16	158	29	19	27	23	1.98
50686562--50686604	20	2.2	20	100	0	86	23	9	16	51	1.73
50686562--50686613	20	2.6	20	90	6	70	23	9	15	51	1.72
50692802--50692895	40	2.4	38	84	10	118	29	14	25	29	1.95
50693908--50694323	195	2.1	195	92	0	688	19	20	32	27	1.97
50696162--50696192	16	1.9	16	93	0	53	48	0	3	48	1.17
50703590--50703716	47	2.7	47	87	4	166	25	19	29	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253