genome.fa.s4.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  171  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55553084--55553116	5	6.6	5	92	0	57	15	39	24	21	1.91
55564031--55564216	67	2.8	67	80	9	177	31	16	29	22	1.95
55564055--55564238	67	2.8	64	77	8	194	29	16	29	23	1.96
55574662--55574828	49	3.5	47	78	13	137	27	19	28	24	1.99
55574700--55574828	49	2.6	50	83	4	163	27	20	27	24	1.99
55578230--55578266	15	2.5	15	95	0	65	35	35	21	8	1.83
55579170--55579267	23	4.3	23	72	8	76	32	20	20	26	1.97
55579181--55579277	23	4.3	22	68	13	54	34	20	21	23	1.97
55585908--55586112	40	5.2	40	88	4	265	23	22	28	25	1.99
55588993--55589421	47	9.1	47	95	0	732	33	11	29	25	1.91
55589015--55589418	22	17.3	22	64	26	122	32	11	29	25	1.92
55598144--55598428	40	7.2	40	92	2	414	23	22	27	26	1.99
55602432--55602507	24	3.3	23	80	9	84	32	18	22	26	1.97
55602432--55602528	46	2.1	46	86	3	133	35	17	22	24	1.95
55602453--55602552	23	4.4	23	69	14	64	32	18	24	26	1.97
55602453--55602552	46	2.2	45	85	5	130	32	18	24	26	1.97
55613155--55613211	30	1.9	30	88	0	87	33	12	24	29	1.92
55614276--55614306	13	2.4	13	100	0	62	19	16	32	32	1.94
55615784--55615974	41	4.7	41	83	5	235	30	24	17	27	1.97
55615750--55615963	82	2.6	81	82	5	252	32	23	16	27	1.96
55616289--55616314	9	2.9	9	100	0	52	23	23	0	53	1.46
55617875--55617913	19	2.1	19	85	9	53	51	10	2	35	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55617932--55617973	21	2.0	21	95	0	75	54	14	7	23	1.64
55622654--55622735	43	2.0	43	82	4	105	25	28	18	28	1.98
55622687--55622793	56	1.9	56	88	0	160	30	26	14	28	1.95
55624569--55624623	25	2.2	26	86	3	76	34	20	9	36	1.84
55626278--55626429	43	3.6	43	76	12	154	26	17	26	29	1.97
55626320--55626435	41	2.8	42	81	3	135	25	17	26	31	1.97
55626899--55627019	58	2.1	58	100	0	242	20	18	16	44	1.87
55633848--55634070	41	5.5	41	86	6	276	30	26	17	25	1.98
55635919--55635959	21	2.0	21	85	0	55	36	7	31	24	1.83
55651370--55651448	31	2.5	31	91	4	124	31	26	13	27	1.94
55651472--55651562	42	2.2	42	95	0	164	39	21	12	26	1.89
55651708--55651830	26	4.8	26	92	1	196	26	23	23	26	2.00
55651708--55651830	52	2.4	51	97	2	230	26	23	23	26	2.00
55651880--55651954	20	3.9	19	87	6	91	34	20	10	34	1.87
55652658--55652736	27	2.9	27	88	7	117	21	26	22	29	1.99
55652847--55653027	27	6.7	27	82	4	177	31	9	20	38	1.85
55652885--55653027	54	2.6	54	87	4	216	31	9	21	37	1.86
55653005--55653216	27	7.9	27	84	6	250	40	9	23	27	1.85
55652885--55653092	54	3.9	54	82	2	184	36	9	20	34	1.85
55653006--55653209	54	3.8	54	88	2	277	40	9	21	27	1.85
55653213--55653311	27	3.7	27	81	5	94	31	9	19	40	1.82
55652878--55653271	81	4.9	80	76	4	265	36	9	22	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55654431--55654464	17	2.0	17	88	11	52	41	17	8	32	1.80
55655533--55655611	31	2.5	31	91	0	131	29	24	18	27	1.98
55655840--55656041	26	7.8	26	91	1	300	26	23	23	26	2.00
55655840--55656041	78	2.6	78	95	2	354	26	23	23	26	2.00
55656091--55656165	20	3.8	20	91	6	111	34	20	9	36	1.84
55656091--55656146	11	5.5	11	71	16	57	32	21	10	35	1.88
55656108--55656164	9	5.8	10	76	15	57	35	19	8	36	1.83
55656869--55656947	27	2.9	27	83	10	99	18	25	22	32	1.97
55657009--55657060	27	1.9	27	84	7	70	38	9	11	40	1.74
55657017--55657265	27	9.1	27	79	8	177	33	9	18	38	1.83
55657017--55657238	54	4.1	54	83	4	223	31	9	18	39	1.83
55657096--55657303	54	3.9	54	82	2	193	36	9	20	34	1.84
55657190--55657394	81	2.5	81	80	3	198	40	8	20	29	1.82
55657218--55657400	27	6.8	27	86	2	217	40	8	22	28	1.82
55657218--55657400	81	2.3	81	85	1	242	40	8	22	28	1.82
55657218--55657400	54	3.4	54	86	1	251	40	8	22	28	1.82
55657406--55657495	27	3.3	27	85	3	119	32	10	17	40	1.83
55657389--55657495	54	2.0	54	81	7	128	30	10	20	38	1.86
55665656--55665920	40	6.6	40	88	4	383	26	27	23	22	1.99
55675221--55675505	39	7.2	40	93	2	388	23	22	28	25	1.99
55679612--55679642	16	2.0	16	93	6	55	35	0	19	45	1.51
55682527--55682599	38	1.9	38	91	0	119	31	28	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55682576--55682701	48	2.6	48	92	1	209	30	23	15	31	1.95
55684912--55684946	18	2.0	18	88	5	54	28	11	34	25	1.91
55692595--55692770	46	3.8	46	81	10	223	21	21	28	28	1.98
55692592--55692762	93	1.8	93	94	0	306	22	21	28	28	1.99
55699847--55700022	46	3.8	46	81	10	214	21	21	28	28	1.99
55699844--55700014	93	1.8	93	93	0	297	22	22	28	27	1.99
55702376--55702797	137	3.1	135	88	6	625	40	8	5	45	1.57
55704339--55704377	20	2.0	20	85	10	53	33	10	0	56	1.33
55721262--55721541	39	7.2	39	93	0	454	22	25	28	23	1.99
55723259--55723403	40	3.6	40	80	9	145	24	22	26	26	2.00
55730833--55730884	14	3.7	14	81	0	68	28	11	3	55	1.53
55731641--55731693	26	2.0	27	96	3	99	60	7	3	28	1.41
55734257--55734332	38	2.0	38	97	0	143	38	18	7	35	1.80
55736358--55736447	27	3.2	27	82	7	110	32	22	25	20	1.98
55736553--55736643	28	3.2	28	95	0	155	30	7	26	35	1.85
55743986--55744052	26	2.5	26	82	2	80	32	13	29	23	1.93
55744170--55744257	28	3.1	28	91	0	140	30	7	26	35	1.85
55747906--55748286	50	7.5	50	72	14	246	31	24	17	26	1.97
55747899--55748087	101	1.9	101	92	0	315	30	23	19	26	1.98
55747906--55748285	151	2.5	151	85	5	493	31	24	17	26	1.97
55751364--55751442	25	3.3	25	61	10	65	32	5	29	32	1.79
55751351--55751731	47	8.0	47	94	1	627	31	8	30	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55751351--55751729	192	2.0	188	93	2	641	31	8	30	29	1.87
55751850--55751928	37	2.1	37	85	0	104	24	17	30	27	1.97
55757850--55757971	21	5.8	21	68	14	72	16	34	26	22	1.95
55757850--55757982	43	3.1	43	80	5	171	16	36	24	23	1.94
55759848--55759934	37	2.4	37	82	1	113	43	32	10	13	1.78
55764865--55764898	8	4.1	8	88	3	50	64	20	0	14	1.28
55781890--55781978	44	2.0	44	100	0	178	41	20	6	31	1.78
55785250--55785309	23	2.4	25	75	18	61	36	21	0	41	1.54
55797647--55797671	7	3.6	7	100	0	50	88	0	0	12	0.53
55800876--55800945	25	2.8	25	93	0	113	25	21	25	27	1.99
55801152--55801290	27	5.2	27	85	1	172	30	21	12	34	1.91
55801152--55801290	53	2.6	54	87	1	181	30	21	12	34	1.91
55801274--55801643	27	13.7	27	80	6	194	31	8	20	38	1.84
55801328--55801643	54	5.8	54	79	4	305	31	9	20	38	1.85
55801329--55801643	81	3.9	81	80	2	346	30	9	20	39	1.85
55804252--55804296	18	2.6	18	82	6	58	15	2	2	80	0.92
55804245--55804299	17	3.2	18	70	29	57	12	5	3	78	1.06
55805261--55805384	60	2.1	60	95	0	221	27	12	6	54	1.62
55805487--55805639	24	6.0	26	73	11	120	32	5	3	59	1.36
55805808--55805850	22	2.0	22	86	8	63	32	6	4	55	1.47
55806981--55807430	47	9.6	47	95	0	756	28	30	8	32	1.87
55807031--55807109	25	3.3	25	66	16	76	31	29	5	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55819159--55819871	205	3.5	205	89	1	1054	29	17	22	30	1.96
55819954--55820038	44	1.9	44	85	4	118	31	16	25	25	1.96
55820758--55820792	18	1.9	18	88	0	52	8	2	5	82	0.91
55821771--55821889	60	2.0	60	94	0	211	26	14	6	52	1.66
55821994--55822146	24	6.0	26	73	11	120	32	5	3	59	1.36
55822315--55822357	22	2.0	22	86	8	63	32	6	4	55	1.47
55831748--55831946	6	32.3	6	70	17	124	51	15	14	19	1.77
55831823--55831915	19	4.6	19	68	21	73	50	15	16	18	1.78
55831819--55831883	25	2.6	25	82	0	94	52	13	15	18	1.75
55831780--55831945	62	2.7	62	87	1	217	50	15	15	18	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253