genome.fa.s4.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  139  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44361576--44361795	80	2.8	80	81	4	248	28	27	20	23	1.99
44369731--44369922	40	4.8	40	92	1	226	27	27	21	23	1.99
44369702--44369921	80	2.8	80	81	4	248	28	27	20	23	1.99
44371676--44371853	47	3.7	47	74	8	146	27	20	29	22	1.98
44377986--44378413	48	9.0	47	78	5	306	25	28	18	28	1.98
44378266--44378341	23	3.2	23	66	14	64	28	28	15	26	1.96
44385862--44386191	48	6.9	48	83	1	288	26	29	16	27	1.97
44388907--44388979	31	2.4	31	90	0	110	63	6	19	10	1.49
44391758--44392163	206	2.0	206	93	0	695	32	20	13	33	1.91
44392910--44392962	25	2.1	25	89	0	79	41	26	16	15	1.88
44393584--44393615	15	2.1	15	94	0	55	15	6	9	68	1.36
44396022--44396056	13	2.7	13	100	0	70	5	22	48	22	1.72
44396959--44396995	19	1.9	19	88	0	56	43	2	16	37	1.62
44397466--44397529	31	2.0	32	85	8	87	45	0	7	46	1.32
44397308--44397588	154	1.8	153	80	10	340	47	1	11	39	1.49
44398421--44398476	15	3.8	15	85	2	78	37	0	10	51	1.37
44398611--44398638	10	2.8	10	100	0	56	32	0	17	50	1.47
44398859--44398968	37	2.8	37	73	6	94	20	18	28	32	1.96
44399117--44399158	20	2.2	20	87	12	61	50	0	21	28	1.49
44400415--44400493	25	3.2	25	83	0	95	35	21	24	18	1.96
44402897--44402933	18	2.1	18	100	0	74	45	5	16	32	1.70
44405997--44406091	39	2.4	40	87	5	149	24	9	17	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44406248--44406297	20	2.5	20	90	0	82	34	20	16	30	1.94
44409139--44409242	51	2.0	51	96	0	190	34	28	7	28	1.85
44421288--44421326	20	2.0	19	90	5	60	30	0	2	66	1.05
44421291--44421342	20	2.5	20	81	6	59	26	5	1	65	1.26
44424979--44425016	19	2.0	19	100	0	76	47	5	21	26	1.71
44427060--44427093	17	2.1	17	88	5	52	61	5	11	20	1.50
44448296--44448579	80	3.5	81	81	6	301	30	8	20	40	1.82
44448333--44448558	81	2.8	81	87	2	314	31	7	19	40	1.81
44448295--44448579	27	10.7	26	81	3	257	30	8	20	40	1.82
44449162--44449202	21	2.0	21	100	0	82	26	24	9	39	1.86
44451982--44452204	40	5.7	40	83	6	240	25	27	21	25	1.99
44451982--44452204	79	2.8	78	81	5	252	25	27	21	25	1.99
44452136--44452213	40	1.9	41	82	10	97	26	28	20	24	1.99
44459889--44460111	40	5.7	40	83	6	240	25	27	21	25	1.99
44459889--44460111	79	2.8	78	81	5	252	25	27	21	25	1.99
44460043--44460120	40	1.9	41	82	10	97	26	28	20	24	1.99
44462478--44462534	30	1.9	30	92	0	96	26	24	7	42	1.80
44463065--44463143	41	1.9	41	97	0	149	36	15	11	36	1.83
44469624--44469680	30	1.9	30	92	0	96	26	24	7	42	1.80
44500071--44500199	46	2.8	45	75	8	125	18	33	20	27	1.96
44513993--44514262	47	5.8	46	73	8	145	21	28	20	29	1.98
44514092--44514262	94	1.8	92	82	8	220	20	28	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44516741--44516771	8	3.9	8	100	0	62	64	12	0	22	1.27
44522216--44522280	31	2.1	31	94	0	112	30	10	9	49	1.69
44526676--44526788	43	2.7	43	79	9	99	30	25	19	23	1.98
44527342--44527468	52	2.4	53	93	4	211	52	9	22	15	1.71
44528608--44528771	40	4.2	40	88	8	230	24	21	27	26	2.00
44528608--44528771	79	2.1	79	87	6	235	24	21	27	26	2.00
44529006--44529049	22	2.0	21	83	16	54	31	18	13	36	1.90
44536773--44536997	40	5.7	40	84	5	269	24	21	27	26	2.00
44536773--44537030	79	3.2	80	80	8	208	25	21	27	25	1.99
44538582--44538697	50	2.3	48	85	11	162	48	10	23	18	1.78
44539817--44540040	40	5.6	40	92	2	353	22	22	27	27	1.99
44540292--44540336	22	2.0	21	84	16	56	31	20	13	35	1.91
44546418--44546640	104	2.2	103	92	2	367	17	18	31	31	1.95
44546560--44546710	71	2.1	72	91	2	243	23	16	29	30	1.96
44549382--44549504	53	2.3	54	94	2	212	52	9	21	16	1.71
44550639--44550845	40	5.2	40	88	4	278	24	21	27	26	1.99
44551080--44551123	22	2.0	21	83	16	54	31	18	13	36	1.90
44564573--44564731	42	3.7	43	73	12	132	23	16	28	30	1.97
44576451--44576570	55	2.2	54	82	5	152	24	25	25	24	2.00
44580659--44580683	13	1.9	13	100	0	50	8	44	32	16	1.76
44581108--44581162	27	2.0	27	96	0	101	43	18	18	20	1.88
44587816--44587854	20	2.0	20	85	10	53	10	2	2	84	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44587814--44587860	19	2.5	19	76	13	53	12	2	2	82	0.84
44588767--44588804	18	2.0	20	90	10	62	7	28	31	31	1.86
44590821--44590996	46	3.8	46	78	10	178	21	20	27	30	1.98
44590818--44590989	93	1.8	93	88	0	263	22	20	27	29	1.99
44605321--44605369	23	2.1	23	88	0	71	24	6	4	65	1.33
44605577--44605702	3	42.7	3	67	7	53	31	9	0	58	1.30
44617625--44617780	44	3.5	44	73	6	136	39	22	20	17	1.93
44617609--44617809	88	2.3	86	82	7	251	37	23	18	19	1.94
44617937--44618271	44	7.7	43	69	10	196	37	20	22	20	1.95
44617921--44618265	87	4.0	87	88	2	460	36	20	21	20	1.95
44620316--44620361	19	2.4	19	88	3	65	56	8	0	34	1.30
44634001--44634034	17	1.9	18	88	5	52	20	0	17	61	1.34
44636503--44636600	27	3.5	28	90	2	135	26	13	28	31	1.94
44636531--44636613	27	3.0	27	87	5	96	30	12	25	32	1.92
44636503--44636614	28	4.0	27	83	6	98	28	12	25	33	1.92
44644577--44644674	27	3.5	28	90	2	135	26	13	28	31	1.94
44644605--44644687	27	3.0	27	87	5	96	30	12	25	32	1.92
44644577--44644688	28	4.0	27	83	6	98	28	12	25	33	1.92
44663625--44663734	40	2.8	40	87	0	139	35	25	17	21	1.95
44663663--44663758	40	2.4	40	94	0	165	32	26	18	22	1.97
44677008--44677041	12	2.8	12	95	0	59	26	23	38	11	1.89
44686116--44686322	40	5.2	40	90	4	305	26	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44687505--44687531	14	1.9	14	100	0	54	0	22	0	77	0.76
44687459--44687579	53	2.2	55	91	2	192	18	22	9	50	1.74
44696801--44696971	93	1.8	93	92	2	290	28	29	21	21	1.98
44696793--44696968	46	3.8	47	81	12	220	29	28	20	21	1.98
44700797--44700826	11	2.7	11	94	0	51	13	3	0	83	0.77
44703320--44703376	30	1.9	30	86	13	82	33	31	19	15	1.93
44710531--44710662	66	2.0	65	85	4	176	44	17	11	26	1.82
44710538--44710680	66	2.2	65	81	7	157	46	16	11	25	1.81
44715155--44715335	40	4.5	40	82	7	188	30	25	17	25	1.97
44715229--44715351	40	3.1	40	85	2	149	29	21	17	30	1.97
44717934--44717969	19	1.9	19	94	5	65	27	19	13	38	1.90
44719009--44719044	18	2.0	18	100	0	72	27	16	11	44	1.82
44720262--44720414	32	4.8	32	86	0	225	32	12	9	46	1.73
44720262--44720414	64	2.4	64	92	0	252	32	12	9	46	1.73
44723940--44723992	21	2.5	21	84	0	70	32	35	7	24	1.84
44728679--44728725	7	6.4	7	81	18	60	61	0	0	38	0.96
44728669--44728727	14	3.8	16	80	19	63	64	0	0	35	0.94
44729734--44729794	32	1.9	32	86	6	88	36	8	11	44	1.71
44729963--44730007	21	2.1	21	87	0	63	46	6	8	37	1.61
44731324--44731397	30	2.5	30	97	0	139	14	18	37	28	1.91
44733119--44733329	46	4.5	46	79	8	194	29	19	27	22	1.98
44733164--44733379	47	4.6	48	78	11	173	29	18	29	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44733119--44733376	140	1.8	140	82	4	333	29	18	28	23	1.98
44736163--44736212	26	1.9	26	95	0	91	12	24	34	30	1.91
44736084--44736348	103	2.6	103	89	3	399	20	20	29	29	1.98
44739416--44739477	28	2.2	31	83	13	80	53	8	3	35	1.47
44748278--44748330	21	2.5	22	79	11	67	26	16	22	33	1.96
44749263--44749306	23	1.9	23	95	0	79	22	13	9	54	1.67
44757006--44757761	383	2.0	367	89	4	1136	31	14	23	30	1.94
44762374--44762506	49	2.7	50	82	4	162	25	30	18	26	1.98
44762422--44762690	46	5.7	46	74	9	179	22	29	18	28	1.97
44762377--44762645	138	1.9	144	81	6	327	25	29	17	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253