genome.fa.s4.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  165  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53572476--53572540	23	3.0	22	73	13	71	44	24	15	15	1.85
53574057--53574116	23	2.6	24	79	12	72	43	1	1	53	1.20
53574060--53574124	30	2.3	28	81	7	78	43	1	1	53	1.19
53575371--53575399	8	3.8	8	95	4	51	20	0	0	79	0.74
53577734--53577786	13	4.1	13	78	7	54	47	7	0	45	1.31
53577742--53577776	9	3.9	9	88	0	52	51	2	0	45	1.16
53582749--53582905	68	2.3	68	82	3	183	26	14	17	40	1.89
53586082--53586155	34	2.1	34	90	2	112	27	31	10	31	1.91
53588292--53588428	66	2.1	65	80	4	150	23	27	27	21	1.99
53598260--53598431	43	4.0	43	75	11	163	31	25	16	26	1.97
53598293--53598432	42	3.3	40	77	14	120	33	25	16	24	1.96
53604326--53604495	43	4.0	42	75	10	119	32	24	17	25	1.97
53604330--53604494	44	3.8	43	75	11	140	31	24	18	25	1.97
53608891--53608957	20	3.3	20	95	4	118	35	10	19	34	1.86
53608902--53608957	11	5.5	11	75	16	66	35	10	19	33	1.87
53608891--53608971	40	2.0	39	84	13	103	35	11	18	34	1.86
53609005--53609112	25	4.4	24	85	11	139	26	22	22	28	1.99
53609005--53609124	49	2.4	50	82	9	147	25	23	22	28	1.99
53609321--53609384	31	2.1	31	85	5	85	39	12	21	26	1.89
53612481--53612702	118	1.9	119	84	6	299	25	27	22	24	2.00
53612479--53612702	40	5.7	40	85	7	287	25	27	22	24	2.00
53620396--53620619	118	1.9	120	82	5	285	26	27	21	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53620396--53620619	40	5.7	40	85	5	276	26	27	21	24	2.00
53637276--53637546	40	6.8	40	84	6	361	25	29	20	24	1.99
53637275--53637546	120	2.3	120	99	0	535	25	29	20	24	1.99
53639271--53639435	40	4.2	40	82	3	208	23	21	26	28	1.99
53639271--53639435	80	2.1	79	88	3	242	23	21	26	28	1.99
53639663--53639704	22	1.9	22	85	9	59	33	9	14	42	1.78
53641491--53641652	41	3.9	40	72	17	127	29	25	21	23	1.99
53650686--53650873	49	3.8	49	79	8	218	29	23	18	28	1.98
53650691--53650878	100	1.9	100	93	0	322	29	23	19	27	1.98
53662380--53662566	49	3.8	49	82	2	248	26	18	26	28	1.98
53662380--53662560	100	1.8	100	96	0	335	25	18	27	28	1.98
53664934--53665120	37	5.2	37	59	14	93	41	12	16	29	1.85
53664929--53665151	72	3.1	72	98	0	428	39	13	15	32	1.86
53665665--53665727	15	4.2	15	75	15	67	11	14	15	58	1.63
53665670--53665738	30	2.3	31	85	9	99	8	14	17	59	1.60
53671316--53671433	43	2.8	42	81	11	134	24	19	25	30	1.98
53675169--53675334	44	3.9	43	72	11	126	33	26	16	24	1.96
53677863--53678000	28	5.0	28	76	4	109	23	22	15	38	1.92
53677863--53677998	56	2.4	56	78	3	141	23	22	15	38	1.92
53681870--53681937	27	2.5	27	78	2	64	26	23	13	36	1.92
53686535--53686733	27	7.4	27	78	6	163	40	20	9	30	1.83
53686535--53686713	54	3.3	54	77	5	184	41	19	8	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53686557--53686732	80	2.2	81	85	1	228	39	20	9	30	1.83
53686710--53686838	27	4.8	27	92	0	177	31	23	6	38	1.79
53686688--53686812	54	2.3	54	81	0	142	35	22	5	36	1.78
53688722--53688799	27	2.9	27	84	5	95	20	21	19	38	1.94
53691093--53691185	27	3.5	27	88	4	136	29	10	17	43	1.82
53695553--53695664	39	2.8	39	89	1	152	23	27	23	25	2.00
53699441--53699552	37	3.0	37	92	0	170	28	32	16	22	1.96
53699696--53699885	48	3.9	48	84	5	265	28	26	6	37	1.82
53699696--53699884	98	1.9	98	88	4	285	28	26	6	37	1.82
53699807--53700048	47	5.1	47	87	2	290	26	28	10	34	1.90
53699948--53700019	22	3.1	22	64	24	58	23	29	13	33	1.93
53699970--53700049	25	3.3	25	66	16	69	30	27	8	33	1.87
53704008--53704046	19	2.1	19	85	0	51	71	7	5	15	1.26
53704509--53704578	27	2.5	28	88	4	97	34	24	24	17	1.96
53704704--53704768	28	2.3	28	97	0	121	30	7	27	33	1.85
53711430--53711468	19	2.1	19	85	0	51	71	7	5	15	1.26
53711907--53712011	55	1.9	56	82	5	133	35	20	24	19	1.96
53711932--53712001	27	2.5	28	88	4	97	34	24	24	17	1.96
53711932--53712018	27	3.1	27	80	8	95	32	24	24	19	1.98
53712127--53712191	28	2.3	28	91	0	103	33	7	24	33	1.84
53714585--53714729	39	3.7	39	85	1	166	26	27	20	25	1.99
53714617--53714742	40	3.2	40	88	1	164	27	24	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53716564--53716674	43	2.6	43	73	7	109	27	17	23	32	1.96
53722193--53722222	15	2.1	15	93	6	53	13	6	10	70	1.34
53726427--53726824	55	7.5	53	76	12	347	35	16	24	23	1.95
53726366--53726812	209	2.1	209	95	0	797	35	15	24	24	1.94
53726636--53726846	108	2.0	109	82	1	264	37	16	23	22	1.94
53738702--53738875	27	6.5	27	77	4	138	28	21	20	30	1.98
53738729--53738866	53	2.6	54	80	14	169	30	19	21	28	1.97
53742457--53742509	27	2.0	27	92	0	88	20	22	20	35	1.96
53742465--53742526	27	2.3	27	82	0	70	19	24	19	37	1.94
53750450--53750501	11	4.5	11	72	9	50	34	3	0	61	1.14
53752629--53752902	46	6.0	46	89	2	363	40	14	22	21	1.90
53754222--53754282	22	2.8	22	95	5	106	39	4	27	27	1.77
53754516--53754544	11	2.6	11	100	0	58	79	0	10	10	0.94
53756028--53756079	11	4.5	11	76	9	59	34	1	0	63	1.06
53758151--53758470	46	7.0	46	88	0	399	39	15	24	21	1.91
53758558--53758614	13	4.3	13	70	2	51	36	3	24	35	1.73
53760717--53760912	89	2.2	90	92	0	322	41	18	7	32	1.79
53760717--53760920	90	2.3	88	88	4	309	41	17	7	33	1.79
53763465--53763493	10	2.9	10	100	0	58	68	10	0	20	1.18
53763977--53764070	24	3.9	25	92	4	149	21	36	4	38	1.73
53774172--53774221	25	2.0	25	92	0	82	18	24	12	46	1.82
53784533--53784586	27	2.0	27	85	0	72	38	7	14	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53786779--53786821	22	1.9	23	90	4	70	18	53	6	20	1.67
53793463--53793556	46	2.1	45	88	4	136	31	28	18	21	1.96
53797080--53797152	34	2.1	34	89	0	110	28	23	23	24	1.99
53803358--53803470	29	3.9	29	82	11	126	28	30	15	26	1.96
53811071--53811145	29	2.6	29	77	12	84	29	34	12	24	1.91
53821045--53821271	93	2.4	93	96	0	409	28	28	19	23	1.98
53821045--53821267	46	4.8	48	74	18	220	29	28	19	23	1.98
53823583--53823753	93	1.8	93	94	0	306	28	29	21	20	1.98
53823583--53823750	46	3.6	46	79	13	200	28	29	21	20	1.98
53831058--53831186	46	2.8	46	93	0	222	31	29	20	19	1.97
53832244--53832689	225	2.0	223	88	4	664	36	19	9	33	1.85
53836718--53836861	46	3.1	46	72	14	125	30	27	18	22	1.98
53846277--53846306	7	4.3	7	100	0	60	46	40	0	13	1.43
53849924--53850043	56	2.1	56	98	0	231	45	9	23	22	1.81
53851638--53851907	47	5.7	47	91	0	407	31	8	30	28	1.88
53852026--53852104	37	2.1	37	90	0	122	24	18	31	25	1.98
53856449--53856873	47	9.1	47	93	1	703	28	30	9	31	1.88
53856449--53856873	139	3.0	141	93	1	703	28	30	9	31	1.88
53860290--53860454	40	4.1	38	75	8	134	26	26	21	25	1.99
53860263--53860420	80	2.0	80	81	7	187	25	26	20	26	1.99
53860798--53860897	43	2.3	43	100	0	200	27	35	15	23	1.94
53862884--53863357	47	10.1	47	94	0	768	29	30	8	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53869126--53869338	40	5.3	40	87	4	234	23	20	27	28	1.99
53869126--53869347	120	1.9	120	80	5	261	24	20	27	27	1.99
53881349--53881527	85	2.1	85	98	0	349	37	8	27	26	1.85
53883714--53884002	47	6.1	47	87	4	391	31	12	30	25	1.93
53883714--53883995	98	3.0	94	86	5	386	31	12	30	25	1.92
53883835--53883910	24	3.2	24	62	23	61	28	13	32	25	1.93
53883714--53884002	145	2.0	141	89	4	436	31	12	30	25	1.93
53883976--53884066	46	2.0	46	84	0	119	32	9	31	25	1.89
53884213--53884321	37	2.9	37	91	0	164	25	19	28	26	1.99
53894766--53894926	45	3.6	45	86	5	204	26	26	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253