genome.fa.s4.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  97  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30329760--30329842	31	2.6	31	82	3	85	15	4	19	60	1.53
30329917--30330179	43	6.1	43	87	5	345	25	31	18	24	1.97
30329917--30330165	87	2.9	84	89	3	356	25	31	18	24	1.98
30332398--30332457	27	2.3	26	82	2	66	33	20	25	21	1.97
30340193--30340223	10	3.1	10	90	0	53	32	9	25	32	1.88
30341703--30341865	45	3.7	44	86	4	220	34	26	14	23	1.94
30342415--30342444	15	2.0	15	93	0	51	56	23	0	20	1.42
30343188--30343290	33	3.1	34	79	6	113	26	25	23	25	2.00
30343312--30343355	22	2.0	23	90	4	72	27	43	0	29	1.55
30350877--30350924	15	3.3	15	73	5	53	31	0	25	43	1.55
30357728--30357838	27	4.1	27	87	5	145	37	21	24	16	1.93
30359248--30359342	24	4.0	24	95	0	154	26	38	2	32	1.68
30361963--30362395	47	9.1	47	92	4	708	31	8	30	29	1.87
30361963--30362395	96	4.5	96	95	2	748	31	8	30	29	1.87
30361963--30362395	143	3.0	143	93	3	730	31	8	30	29	1.87
30362514--30362592	37	2.1	37	90	0	122	24	18	31	25	1.98
30364441--30364575	43	3.4	43	79	20	193	24	14	34	26	1.94
30364499--30364566	35	2.0	34	91	8	113	29	13	29	27	1.94
30364561--30364630	29	2.4	29	88	4	97	27	15	31	25	1.96
30365016--30365119	37	2.7	39	85	7	133	23	21	27	27	1.99
30368389--30368467	25	3.3	25	61	10	65	32	5	29	32	1.79
30368373--30368762	47	8.1	47	87	8	552	31	8	30	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30368373--30368762	95	4.0	96	89	6	592	31	8	30	29	1.88
30368888--30368964	37	2.1	37	90	0	118	22	19	32	25	1.97
30376088--30376198	27	4.2	26	88	5	150	38	22	23	15	1.92
30376615--30376645	16	2.0	15	93	6	53	16	19	12	51	1.76
30377606--30377706	24	4.2	24	93	0	166	25	40	0	32	1.63
30381413--30381488	25	3.2	25	64	21	63	43	13	21	22	1.86
30381391--30381847	46	10.0	46	88	1	623	40	13	23	22	1.90
30381392--30381463	21	3.2	21	66	21	56	40	9	23	26	1.85
30382128--30382160	17	2.0	17	94	5	59	48	0	15	36	1.45
30385796--30385871	38	2.0	38	100	0	152	31	13	23	31	1.93
30392648--30392700	16	3.3	16	91	0	88	50	16	20	11	1.76
30392916--30392986	29	2.5	29	83	2	90	30	12	26	29	1.93
30396026--30396110	42	2.0	42	97	0	161	27	9	28	35	1.88
30398702--30398734	16	1.9	18	88	11	52	42	27	6	24	1.78
30400678--30400713	2	18.0	2	100	0	72	50	50	0	0	1.00
30400903--30401021	39	3.1	38	81	6	132	21	23	21	33	1.97
30404053--30404087	8	4.2	8	92	3	52	31	0	2	65	1.07
30407038--30407077	20	2.1	19	85	4	53	32	7	12	47	1.69
30411648--30411800	42	3.6	42	77	3	155	30	28	13	28	1.94
30413807--30413937	45	3.0	46	82	8	139	23	25	24	25	2.00
30414322--30414561	38	6.3	38	87	1	345	30	25	22	21	1.98
30414333--30414560	116	2.0	114	91	1	366	29	25	22	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30418916--30418965	16	3.1	17	80	8	59	42	0	0	58	0.98
30419822--30419944	51	2.4	51	84	2	158	43	13	17	26	1.86
30420480--30420548	27	2.4	27	85	7	84	17	2	40	39	1.64
30421016--30421041	2	13.0	2	100	0	52	50	0	0	50	1.00
30426483--30426548	16	4.4	15	74	12	55	51	1	0	46	1.10
30426478--30426548	5	14.4	5	71	17	51	53	1	0	45	1.09
30426437--30426614	60	2.8	62	79	13	179	55	1	1	42	1.17
30433838--30433918	40	2.0	40	92	0	135	28	11	25	34	1.90
30434910--30434939	6	5.0	6	100	0	60	83	0	16	0	0.65
30436057--30436088	15	2.1	15	100	0	64	75	0	12	12	1.06
30436090--30436121	7	4.6	7	100	0	64	43	28	0	28	1.55
30441752--30441785	17	2.0	17	88	0	50	23	14	5	55	1.61
30444074--30444841	277	2.8	276	90	1	1205	27	21	16	35	1.94
30448192--30448231	20	2.0	20	85	0	53	42	20	7	30	1.79
30455804--30455840	16	2.3	17	81	13	51	51	0	5	43	1.24
30457281--30457555	136	2.0	135	97	0	523	23	16	6	53	1.65
30458214--30458259	24	1.9	24	82	8	58	28	15	4	52	1.61
30461839--30461901	31	2.0	31	100	0	126	65	6	12	15	1.46
30463176--30463211	10	3.6	10	88	0	54	25	30	11	33	1.90
30467554--30467872	48	6.6	48	88	2	428	33	8	27	30	1.86
30467554--30467872	96	3.3	96	92	3	493	33	8	27	30	1.86
30467554--30467925	144	2.6	146	83	5	447	34	8	27	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30468075--30468226	37	4.1	37	93	0	250	22	21	32	24	1.98
30469511--30469800	40	7.2	40	92	3	449	24	20	27	27	1.99
30473831--30474102	48	5.6	48	89	3	422	33	6	28	31	1.83
30473831--30474202	48	7.8	47	82	10	395	34	7	28	29	1.85
30473831--30474148	95	3.3	95	92	3	498	33	7	28	30	1.85
30474351--30474502	37	4.1	37	92	0	232	23	20	30	25	1.98
30480355--30480500	40	3.7	40	84	5	188	26	27	22	23	2.00
30484108--30484292	40	4.6	41	84	7	231	26	27	22	23	1.99
30484108--30484292	79	2.3	81	85	7	245	26	27	22	23	1.99
30489418--30489496	29	2.7	29	86	5	106	27	32	15	24	1.95
30496337--30496584	49	4.9	51	80	5	274	27	25	20	26	1.99
30496337--30496566	100	2.3	100	95	0	406	27	25	20	26	1.99
30499037--30499092	15	3.7	15	74	25	64	62	10	14	12	1.55
30501190--30501380	49	3.9	48	77	8	195	28	24	19	27	1.99
30501191--30501374	100	1.8	100	91	0	305	28	24	19	27	1.99
30506292--30506509	39	5.5	39	89	1	303	19	22	27	30	1.98
30511184--30511229	23	2.0	23	95	0	83	45	10	0	43	1.39
30515889--30516112	40	5.6	40	85	6	301	25	26	23	24	2.00
30515889--30516112	83	2.8	80	87	5	301	25	26	23	24	2.00
30524112--30524335	40	5.6	40	86	6	310	25	26	23	24	2.00
30524112--30524335	83	2.8	80	88	4	317	25	26	23	24	2.00
30527940--30528053	43	2.7	43	88	0	165	26	21	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30530148--30530221	25	3.0	25	86	4	105	33	24	14	27	1.94
30530151--30530232	25	3.3	25	79	3	94	34	23	15	26	1.95
30534609--30534669	31	2.0	31	87	6	88	22	13	26	37	1.91
30546595--30546645	18	2.8	18	87	0	75	45	11	19	23	1.83
30548629--30548719	28	3.2	28	87	4	121	30	21	25	21	1.99
30550700--30550916	40	5.5	40	92	3	343	23	23	28	24	2.00
30558989--30559203	40	5.4	40	89	2	310	23	22	27	26	2.00
30560614--30560681	28	2.4	28	95	0	118	32	7	26	33	1.84
30568222--30568304	28	3.0	28	91	3	132	31	21	25	21	1.98
30568410--30568474	28	2.4	28	92	2	105	32	7	26	33	1.85
30571652--30572533	441	2.0	441	100	0	1764	34	9	22	33	1.87
30579592--30579634	21	2.0	21	100	0	86	23	9	13	53	1.69
30583459--30583513	23	2.5	23	82	8	71	21	12	16	49	1.79
30587398--30587620	27	8.3	27	80	4	209	25	20	16	37	1.93
30587386--30587492	54	2.0	54	81	3	126	26	21	18	33	1.96
30587415--30587620	81	2.5	80	85	3	270	25	19	16	37	1.93
30587604--30587864	27	9.7	27	79	2	247	29	8	21	40	1.83
30587576--30587842	54	4.9	53	80	5	175	31	10	19	38	1.85
30587417--30587647	81	2.8	80	83	5	205	25	18	16	38	1.92
30587604--30587842	81	3.0	80	82	3	309	31	8	20	39	1.83
30600407--30600466	15	4.0	15	83	12	52	61	15	10	13	1.56
30604239--30604320	43	1.9	43	94	0	146	29	31	17	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30604257--30604449	42	4.5	43	71	8	122	32	27	17	23	1.96
30608622--30608706	27	3.1	28	73	21	81	48	1	0	50	1.08
30608655--30608727	11	7.2	11	77	17	77	53	0	0	46	1.00
30608639--30608721	19	4.2	21	86	6	88	51	0	0	48	1.00
30608681--30608741	30	2.0	29	81	12	70	59	0	3	37	1.14
30609316--30609465	67	2.2	67	81	8	171	32	17	28	21	1.96
30609340--30609523	67	2.8	64	77	8	194	29	17	29	22	1.97
30615472--30615599	46	2.8	46	93	0	220	20	21	28	29	1.98
30618533--30618601	15	4.6	15	83	0	84	11	17	13	57	1.64
30618524--30618611	30	3.0	30	81	8	99	10	17	15	56	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253