genome.fa.s4.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  160  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51749033--51750399	680	2.0	681	98	0	2619	31	19	13	34	1.91
51751143--51751200	30	1.9	30	92	0	98	32	13	25	27	1.94
51751544--51751806	47	5.6	46	71	11	151	27	18	30	23	1.98
51751538--51751806	140	1.9	141	81	5	321	27	18	30	23	1.98
51756140--51756605	96	4.9	94	93	4	738	32	8	29	29	1.87
51756161--51756600	49	9.1	49	95	3	745	32	8	29	29	1.87
51756161--51756600	145	3.0	145	96	1	787	32	8	29	29	1.87
51756140--51756605	47	9.7	47	94	3	738	32	8	29	29	1.87
51756724--51756802	37	2.1	37	90	0	122	24	18	31	25	1.98
51759005--51759055	24	2.1	24	100	0	102	50	7	25	15	1.71
51767027--51767268	40	6.1	40	92	1	364	23	23	27	26	2.00
51770334--51770380	23	2.0	23	83	0	58	23	31	8	36	1.85
51771698--51771743	6	7.7	6	88	9	58	26	2	0	71	0.97
51777884--51777967	43	2.0	43	84	13	111	30	29	15	23	1.95
51786256--51786469	46	4.6	46	75	12	154	28	19	28	23	1.98
51786353--51786517	47	3.5	47	82	7	160	27	17	31	23	1.97
51786259--51786516	140	1.8	140	81	3	322	28	17	30	23	1.97
51794758--51795065	40	7.6	40	81	7	368	25	26	22	25	2.00
51794758--51795059	83	3.7	83	83	4	423	25	26	22	24	2.00
51794758--51795065	123	2.5	121	83	4	395	25	26	22	25	2.00
51796868--51796893	12	2.2	12	100	0	52	34	7	15	42	1.75
51796929--51797193	47	5.7	47	81	9	244	25	30	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51798495--51798614	56	2.1	56	96	3	224	44	9	24	22	1.82
51800471--51802134	47	34.8	47	93	5	2771	32	8	29	29	1.87
51800471--51802079	96	16.9	89	88	9	1662	32	8	29	30	1.87
51800471--51802134	143	11.6	142	93	6	2783	32	8	29	29	1.87
51800711--51800801	27	3.3	27	64	24	71	34	5	28	31	1.80
51802254--51802331	36	2.1	37	88	2	113	24	17	32	25	1.97
51810681--51810736	29	2.0	29	85	3	78	41	3	21	33	1.70
51824750--51824787	16	2.3	17	82	17	53	21	5	10	63	1.46
51841333--51841419	27	3.2	27	88	1	129	35	24	22	17	1.95
51842115--51842152	19	2.0	19	85	10	51	21	44	23	10	1.83
51856227--51856351	45	2.9	44	83	10	134	25	28	21	24	1.99
51857784--51857968	40	4.7	40	83	9	227	25	27	22	24	2.00
51857784--51857968	79	2.3	82	83	9	231	25	27	22	24	2.00
51859835--51860001	43	3.9	43	91	0	255	29	31	23	14	1.95
51875442--51875614	49	3.5	49	87	2	231	24	16	28	31	1.96
51880554--51880581	14	2.0	14	100	0	56	50	7	0	42	1.30
51881601--51881634	17	1.9	18	88	5	52	11	41	41	5	1.66
51885673--51885751	40	1.9	41	82	10	99	18	40	21	18	1.92
51886692--51886856	46	3.5	46	86	8	194	22	31	18	27	1.97
51897103--51897200	27	3.5	28	90	2	135	26	13	28	31	1.94
51897131--51897213	27	3.0	27	87	5	96	30	12	25	32	1.92
51897103--51897214	28	4.0	27	83	6	98	28	12	25	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51905280--51905377	27	3.5	28	90	2	135	26	13	28	31	1.94
51905308--51905390	27	3.0	27	87	5	96	30	12	25	32	1.92
51905280--51905391	28	4.0	27	83	6	98	28	12	25	33	1.92
51913290--51913351	24	2.6	23	80	7	70	35	27	14	22	1.93
51919317--51919585	40	6.7	40	87	5	391	25	26	22	26	2.00
51919284--51919585	120	2.5	119	86	5	412	24	25	22	27	2.00
51927546--51927811	40	6.7	40	90	5	425	25	27	22	24	1.99
51927546--51927806	79	3.3	80	93	3	440	26	28	22	23	1.99
51930309--51930522	46	4.6	48	82	8	210	25	30	17	26	1.97
51930309--51930522	93	2.3	94	79	10	224	25	30	17	26	1.97
51936046--51936120	28	2.7	28	87	0	96	26	34	12	26	1.91
51939570--51939744	96	1.8	95	82	4	226	22	29	21	26	1.99
51939570--51939791	48	4.6	47	79	6	180	24	31	19	24	1.98
51939780--51939865	37	2.4	37	84	2	120	25	30	19	24	1.98
51942529--51942693	40	4.4	40	69	17	138	33	27	15	23	1.95
51942504--51942650	68	2.2	68	87	0	213	33	27	14	23	1.95
51958753--51959272	47	11.1	47	95	0	853	32	9	30	28	1.88
51959391--51959469	37	2.1	37	86	4	106	26	18	29	25	1.98
51965251--51965432	49	3.7	49	80	2	220	26	18	25	29	1.98
51996597--51996648	26	2.0	26	100	0	104	30	7	30	30	1.85
51996623--51996850	47	4.8	47	93	1	348	32	8	30	28	1.86
51996969--51997047	37	2.1	37	88	4	115	25	18	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52007592--52007713	26	4.6	27	77	8	117	38	22	9	29	1.85
52007592--52007740	26	5.6	25	71	10	91	38	22	9	28	1.85
52007667--52007742	27	2.9	27	78	11	77	39	21	9	30	1.84
52007592--52007742	53	2.8	52	75	9	144	38	23	9	29	1.86
52007683--52007865	81	2.3	80	80	5	181	34	19	7	37	1.81
52007736--52007984	27	9.2	27	86	2	275	31	20	7	40	1.79
52007736--52007984	81	3.1	81	85	1	329	31	20	7	40	1.79
52008423--52008501	31	2.5	32	84	11	110	15	16	15	53	1.74
52008422--52008512	6	14.8	6	73	13	69	16	16	14	52	1.75
52010468--52010590	27	4.6	27	79	9	119	38	24	9	27	1.87
52010460--52010619	53	3.0	53	76	7	162	37	24	10	28	1.87
52010613--52010807	27	7.2	27	84	2	221	31	21	6	40	1.78
52010616--52010807	81	2.4	80	85	5	251	31	21	6	40	1.78
52011312--52011384	31	2.4	31	86	4	103	16	17	15	50	1.78
52011312--52011384	6	11.8	6	70	21	53	16	17	15	50	1.78
52013746--52013869	27	4.7	26	75	11	101	37	22	10	29	1.87
52013770--52014023	27	9.4	27	80	7	142	35	22	8	33	1.84
52013768--52013897	53	2.4	54	81	6	147	37	23	10	28	1.87
52013891--52014023	54	2.4	54	86	1	176	32	22	6	38	1.80
52014583--52014621	19	2.0	20	85	14	55	51	23	10	15	1.73
52016076--52016334	40	6.5	41	88	7	331	25	27	23	23	2.00
52024223--52024454	40	5.8	40	91	3	337	25	27	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52024197--52024454	80	3.2	80	87	7	348	25	27	23	24	2.00
52027326--52027419	42	2.2	43	82	1	109	25	21	20	32	1.97
52029591--52029618	14	2.0	14	100	0	56	21	7	21	50	1.72
52029734--52029875	42	3.4	42	88	0	221	35	26	16	21	1.94
52031348--52031454	53	2.0	53	85	0	142	24	26	14	35	1.93
52039083--52039181	38	2.6	38	86	1	99	37	30	16	16	1.90
52039098--52039188	38	2.4	38	96	0	164	36	28	18	16	1.93
52055324--52055388	34	1.9	34	87	3	96	23	23	24	29	1.99
52055947--52055995	17	2.8	17	90	3	80	18	42	32	6	1.75
52056654--52056679	9	2.9	9	100	0	52	57	0	34	7	1.27
52063498--52063588	39	2.3	41	79	12	100	65	2	3	28	1.20
52063541--52063607	30	2.2	31	81	5	82	65	0	2	31	1.07
52063688--52063764	13	5.6	13	74	21	52	63	1	3	31	1.20
52063714--52063818	38	2.9	36	80	12	117	61	0	5	31	1.25
52065127--52065207	42	1.9	42	100	0	162	19	16	27	37	1.93
52065592--52066275	206	3.3	206	88	1	969	27	22	17	32	1.97
52074336--52074362	14	1.9	14	100	0	54	44	0	7	48	1.31
52077966--52078032	30	2.2	31	81	5	82	65	0	4	29	1.12
52078125--52078240	35	3.1	35	74	16	92	60	1	7	30	1.35
52078159--52078202	22	2.0	21	83	12	54	59	0	11	29	1.32
52081289--52081752	232	2.0	232	97	0	883	35	10	21	32	1.88
52099846--52099924	39	2.0	40	80	11	92	34	5	2	58	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52103347--52103387	18	2.3	19	79	12	50	26	41	24	7	1.81
52106565--52106768	48	4.2	49	83	6	140	28	29	16	25	1.96
52106604--52106792	48	4.0	47	90	4	272	27	29	17	24	1.98
52108272--52108314	21	2.0	21	100	0	86	32	27	9	30	1.88
52109512--52109597	30	2.9	30	82	6	104	29	24	8	38	1.84
52109640--52109694	23	2.4	22	76	8	56	36	18	0	45	1.49
52115337--52115372	13	2.8	13	84	16	56	69	2	5	22	1.22
52125742--52125793	24	2.2	24	85	0	68	34	3	9	51	1.53
52127873--52127916	13	3.5	13	75	12	56	34	2	6	56	1.38
52130790--52130978	48	3.9	48	87	1	281	34	30	16	17	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253