genome.fa.s4.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  145  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46456864--46456904	21	2.0	21	85	0	55	31	21	26	19	1.97
46458829--46458910	6	13.7	6	73	10	69	15	4	2	76	1.06
46458836--46458883	9	5.2	9	82	12	55	18	2	2	77	0.97
46458830--46458890	15	4.2	15	78	18	67	18	3	1	77	0.99
46458827--46458891	28	2.4	25	87	12	94	18	3	1	76	0.99
46458829--46458925	32	2.9	34	79	14	103	16	6	2	75	1.10
46459909--46459935	12	2.2	12	100	0	54	22	25	7	44	1.79
46461276--46461306	14	2.2	14	94	0	53	48	0	3	48	1.17
46471374--46471483	43	2.6	42	81	2	121	31	13	27	27	1.94
46478052--46478183	42	3.1	41	81	6	149	30	17	22	29	1.97
46479935--46480031	42	2.3	42	91	3	151	30	14	23	30	1.94
46484322--46484642	48	6.7	48	76	4	227	28	19	27	24	1.98
46488401--46488576	46	3.8	46	78	12	207	21	21	28	28	1.98
46488398--46488569	93	1.8	93	94	0	308	21	21	29	27	1.99
46490874--46490930	22	2.6	22	85	0	87	17	33	36	12	1.87
46492100--46492220	46	2.6	46	84	10	149	28	20	26	24	1.99
46499012--46499046	16	2.1	17	89	5	54	57	14	11	17	1.66
46499036--46499060	13	1.9	13	100	0	50	64	16	8	12	1.49
46499723--46499784	27	2.3	27	85	2	79	38	16	17	27	1.91
46504488--46504604	55	2.1	55	85	0	162	19	28	26	25	1.99
46514447--46514481	16	2.1	17	89	5	54	57	14	11	17	1.66
46514471--46514495	13	1.9	13	100	0	50	64	16	8	12	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46515158--46515219	27	2.3	27	85	2	79	38	16	17	27	1.91
46519921--46520037	55	2.1	55	85	0	162	19	28	26	25	1.99
46531571--46531676	42	2.5	42	81	3	124	32	16	26	24	1.97
46536103--46536210	20	5.3	20	65	8	65	37	15	28	18	1.92
46536081--46536476	41	9.7	41	81	1	418	34	14	28	22	1.94
46536165--46536275	21	5.4	21	65	8	66	30	14	30	24	1.94
46536268--46536333	20	3.2	20	65	12	53	31	15	36	16	1.90
46537457--46537486	15	2.1	15	93	6	53	60	6	0	33	1.23
46540649--46540761	43	2.7	41	77	10	111	28	27	15	28	1.96
46540681--46540761	42	1.9	42	84	2	108	28	28	13	29	1.94
46546099--46546242	40	3.6	40	81	6	184	26	22	25	25	2.00
46546099--46546278	80	2.3	79	86	5	240	25	22	26	25	2.00
46548488--46548679	40	4.8	40	92	1	296	24	21	28	25	1.99
46556178--46556216	19	2.1	19	100	0	78	33	5	25	35	1.78
46556723--46556953	119	1.9	120	85	4	315	24	20	28	26	1.99
46556723--46556953	40	5.8	40	93	2	315	24	20	28	26	1.99
46556723--46556982	119	2.2	119	81	6	303	24	20	27	27	1.99
46564729--46564943	119	1.8	119	86	2	315	19	33	12	35	1.88
46567522--46567580	27	2.2	27	87	6	84	44	8	23	23	1.81
46573081--46573232	43	3.5	43	78	12	125	26	18	23	31	1.97
46575090--46575181	6	15.3	6	100	0	184	17	0	32	50	1.47
46583602--46583815	48	4.6	46	78	9	211	26	17	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46583602--46583815	93	2.3	93	86	4	279	26	17	29	25	1.98
46583733--46583960	49	4.8	49	76	10	186	25	20	30	23	1.98
46584892--46584925	13	2.6	13	100	0	68	0	32	38	29	1.58
46587029--46587147	43	2.8	42	78	7	125	25	21	26	26	1.99
46596426--46596464	2	20.0	2	89	5	62	2	0	46	51	1.14
46601900--46601975	35	2.1	35	97	2	143	30	18	7	43	1.78
46605561--46605816	80	3.2	80	89	3	367	24	22	26	26	2.00
46605561--46605790	40	5.8	40	92	1	356	23	22	27	26	1.99
46610639--46610680	17	2.4	17	88	11	59	61	0	2	35	1.09
46610898--46610935	16	2.4	16	90	0	58	60	0	23	15	1.35
46611109--46611158	15	3.4	15	73	15	59	14	20	2	64	1.39
46611106--46611165	29	2.1	29	100	0	120	13	20	5	61	1.50
46612238--46612283	23	2.0	23	95	0	83	45	13	4	36	1.63
46613357--46613386	3	10.0	3	100	0	60	33	0	0	66	0.92
46618988--46619034	15	2.9	16	81	15	53	59	0	0	40	0.97
46619426--46619480	28	1.9	29	88	3	85	34	0	9	56	1.31
46619772--46619826	27	2.0	29	85	7	78	45	0	0	54	0.99
46620242--46620291	25	1.9	25	84	8	64	68	2	16	14	1.31
46626885--46626937	22	2.5	21	79	17	56	11	5	24	58	1.54
46631084--46631134	13	3.8	14	77	15	54	33	0	1	64	1.05
46631085--46631136	26	2.0	26	88	3	77	32	0	1	65	1.04
46640335--46640386	23	2.3	22	75	21	54	9	23	1	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46640344--46640398	12	4.6	12	73	15	51	12	23	0	63	1.29
46645663--46645793	52	2.5	52	91	0	208	21	12	7	58	1.60
46647799--46647851	28	1.9	27	88	3	79	41	0	11	47	1.39
46647796--46647857	27	2.3	26	81	8	79	38	0	9	51	1.35
46647852--46647899	20	2.5	20	86	10	64	25	6	2	66	1.26
46653186--46653247	27	2.3	26	78	8	70	37	0	11	51	1.38
46653999--46654040	19	2.3	18	84	12	50	28	11	4	54	1.57
46660041--46660088	23	2.1	23	100	0	96	45	8	20	25	1.79
46660639--46660677	16	2.3	16	91	8	60	61	0	0	38	0.96
46660639--46660676	17	2.2	17	90	4	58	63	0	0	36	0.95
46660646--46660684	16	2.3	16	86	8	51	66	0	0	33	0.92
46665530--46665563	14	2.4	14	100	0	68	41	5	20	32	1.76
46666351--46666414	20	3.2	20	72	14	60	56	1	0	42	1.09
46671502--46671533	12	2.7	12	100	0	64	31	28	34	6	1.82
46675796--46675840	14	3.1	15	78	15	58	62	0	2	35	1.08
46679615--46679771	59	2.7	58	81	6	169	19	14	7	58	1.59
46679613--46679799	28	6.6	28	70	11	121	19	14	8	57	1.62
46688391--46688527	45	3.0	47	79	2	125	31	16	25	26	1.97
46688527--46688648	47	2.6	47	93	0	190	36	13	24	24	1.92
46688627--46689073	54	8.6	55	73	13	278	37	17	23	22	1.94
46690966--46690992	6	4.5	6	100	0	54	55	0	29	14	1.40
46690965--46691005	13	3.2	13	86	6	57	60	0	24	14	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46704921--46705067	71	2.1	71	93	1	260	27	24	5	42	1.76
46705603--46705638	13	2.8	13	95	0	63	16	27	36	19	1.93
46712244--46712275	14	2.4	13	90	10	55	18	6	12	62	1.50
46716000--46716355	94	3.8	94	77	12	369	27	19	28	23	1.99
46715997--46716355	47	7.7	47	72	14	226	27	20	28	23	1.99
46734175--46734226	23	2.4	22	79	17	56	3	30	0	65	1.10
46741301--46741334	10	3.4	10	95	0	59	64	0	17	17	1.29
46741384--46741418	12	2.7	13	91	8	54	71	0	14	14	1.15
46741339--46741469	63	2.0	65	88	2	194	52	5	15	26	1.64
46743022--46743071	22	2.3	21	80	12	57	42	0	2	56	1.11
46748843--46749065	40	5.6	40	84	3	236	26	28	20	24	1.99
46756750--46756972	40	5.6	40	84	3	236	26	28	20	24	1.99
46764038--46764212	87	2.0	87	97	0	332	42	21	4	31	1.73
46764949--46765012	30	2.2	29	94	2	110	35	23	15	25	1.94
46776388--46776432	21	2.1	22	84	12	58	40	0	13	46	1.43
46777262--46777291	9	3.3	9	90	0	51	20	33	6	40	1.78
46779479--46779677	99	2.0	99	100	0	398	36	18	4	41	1.69
46781220--46781258	19	1.9	19	85	10	51	51	0	20	28	1.48
46786134--46786222	41	2.2	40	87	2	124	43	12	23	20	1.85
46786155--46786261	40	2.7	40	82	7	110	42	12	22	23	1.87
46786583--46786622	20	2.0	20	95	0	71	42	2	15	40	1.60
46786692--46786738	25	1.9	24	91	4	76	29	8	2	59	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46787542--46787585	22	2.0	22	82	8	54	27	2	11	59	1.44
46792641--46792844	71	2.8	71	76	8	209	34	5	13	46	1.68
46793215--46793258	19	2.3	18	81	11	52	29	0	4	65	1.12
46793216--46793253	19	2.0	20	89	5	60	26	0	5	68	1.11
46793296--46793366	35	2.0	35	81	10	83	36	1	4	57	1.27
46793795--46793861	35	1.9	35	87	0	98	47	8	7	35	1.63
46793941--46794033	47	2.0	48	93	2	161	30	26	21	21	1.98
46796233--46796279	21	2.3	19	82	10	58	29	27	6	36	1.82
46796241--46796288	21	2.3	20	80	13	53	22	33	10	33	1.88
46815858--46815906	25	2.0	25	87	0	71	36	22	14	26	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253