genome.fa.s4.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  136  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43549755--43550081	173	1.9	174	94	0	575	30	14	24	31	1.94
43557897--43557974	29	2.7	28	84	11	104	25	15	30	28	1.96
43557927--43558253	173	1.9	174	93	0	566	29	14	24	31	1.94
43568285--43568421	56	2.4	56	87	0	193	32	21	16	29	1.96
43575781--43576262	48	10.0	48	93	0	766	36	7	24	31	1.83
43594136--43594214	15	5.4	15	77	10	83	10	16	13	59	1.60
43594127--43594213	29	3.0	30	80	12	92	10	16	16	57	1.65
43598766--43598982	40	5.5	40	91	3	334	23	23	28	24	1.99
43598762--43598982	79	2.8	80	89	4	342	24	22	28	24	2.00
43615058--43615107	21	2.5	20	78	15	57	60	4	0	36	1.16
43615057--43615116	19	3.1	19	73	15	59	53	3	0	43	1.17
43619330--43619382	24	2.2	25	86	3	72	15	11	9	64	1.50
43619444--43619499	24	2.3	24	81	0	76	21	21	7	50	1.72
43619453--43619511	24	2.5	24	83	2	66	18	16	8	55	1.66
43625975--43626161	49	3.8	49	86	1	275	25	16	28	29	1.97
43625967--43626148	99	1.8	99	95	0	328	24	16	29	29	1.97
43627564--43627632	30	2.3	30	89	0	111	20	36	24	18	1.95
43630091--43630305	49	4.3	49	85	4	270	28	26	19	25	1.98
43630072--43630305	99	2.3	100	84	4	303	28	27	19	25	1.99
43632681--43632726	22	2.0	22	83	12	56	60	15	8	15	1.57
43632711--43632774	15	4.4	15	77	16	64	64	14	12	9	1.50
43632711--43632778	30	2.3	30	80	16	81	61	17	11	8	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43635720--43635945	48	4.6	49	82	5	258	27	25	19	27	1.99
43643288--43643437	38	3.9	38	83	6	169	24	21	24	30	1.99
43651309--43651466	38	4.1	38	89	6	212	22	23	25	29	1.99
43651309--43651486	76	2.3	78	85	5	236	22	23	25	28	1.99
43659065--43659152	43	2.1	42	91	2	140	21	19	32	26	1.97
43660617--43660682	33	2.0	33	90	0	105	27	12	21	39	1.88
43663104--43663147	15	2.9	15	89	0	61	15	18	11	54	1.70
43665826--43665917	43	2.2	42	88	2	130	25	19	26	29	1.99
43665954--43666052	51	2.0	50	91	2	162	25	14	26	34	1.94
43678201--43678266	33	2.0	32	85	8	89	48	21	3	27	1.64
43678991--43679088	42	2.3	42	85	3	135	33	24	17	24	1.96
43678990--43679127	42	3.2	42	82	6	127	31	24	17	26	1.97
43688065--43688269	53	3.8	53	74	10	173	38	17	23	20	1.93
43702092--43702462	48	7.8	48	83	4	403	25	15	30	28	1.96
43702100--43702462	143	2.5	143	86	3	462	25	15	30	28	1.96
43705649--43705807	43	3.7	43	77	13	175	23	18	26	31	1.97
43717096--43717122	14	1.9	14	100	0	54	44	3	29	22	1.70
43720360--43720392	13	2.5	13	90	0	57	39	39	18	3	1.66
43727420--43727568	40	3.7	40	92	0	235	23	20	26	29	1.99
43727420--43727589	40	4.2	40	90	1	234	24	21	26	27	1.99
43735712--43735875	40	4.1	40	87	3	197	25	20	25	28	1.99
43735712--43735881	80	2.1	80	84	4	218	25	21	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43737483--43737538	15	3.7	15	88	7	87	12	16	10	60	1.58
43739956--43740131	46	3.8	46	79	15	209	21	19	29	30	1.97
43739952--43740123	93	1.8	93	93	0	299	20	19	30	29	1.97
43744012--43744081	30	2.3	31	79	13	76	51	34	1	12	1.49
43744717--43744991	96	2.9	96	80	5	290	25	28	20	26	1.99
43744717--43745000	48	5.9	47	73	10	193	25	28	19	26	1.99
43746766--43746824	29	2.0	29	100	0	118	23	23	27	25	2.00
43751214--43751257	21	2.1	21	91	4	72	22	25	40	11	1.87
43754007--43754197	47	4.1	47	88	0	265	32	10	28	27	1.90
43754081--43754156	23	3.2	25	62	24	63	28	13	34	23	1.92
43754170--43754401	48	4.8	48	91	5	378	35	7	26	30	1.85
43754170--43754401	95	2.4	97	92	4	380	35	7	26	30	1.85
43754547--43754654	37	2.9	37	91	1	173	24	18	30	26	1.98
43766213--43766335	55	2.2	56	88	2	176	26	12	28	33	1.92
43766213--43766335	28	4.4	28	90	2	176	26	12	28	33	1.92
43766238--43766348	28	4.0	27	90	3	116	28	11	26	33	1.91
43774411--43774533	55	2.2	56	88	2	176	26	12	28	33	1.92
43774411--43774533	28	4.4	28	90	2	176	26	12	28	33	1.92
43774436--43774546	28	4.0	27	90	3	116	28	11	26	33	1.91
43778073--43778203	27	4.9	27	88	0	172	28	22	9	39	1.86
43778181--43778484	27	11.2	27	74	10	181	39	20	9	31	1.84
43778195--43778373	27	6.7	26	81	8	198	41	19	8	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43778195--43778484	54	5.3	52	76	8	202	40	19	9	31	1.83
43778181--43778428	81	3.0	81	83	8	283	40	20	8	30	1.82
43778504--43778581	27	2.9	27	78	3	86	37	21	17	23	1.94
43779718--43779765	25	1.9	25	86	0	69	33	25	16	25	1.96
43779879--43780024	25	6.0	24	82	9	172	27	21	23	26	1.99
43779878--43780023	49	3.0	48	84	5	170	28	21	23	26	1.99
43780216--43780279	31	2.1	31	90	0	101	37	14	23	25	1.92
43781193--43781525	48	6.9	48	73	6	228	26	27	16	29	1.97
43781247--43781515	96	2.8	95	83	4	290	25	27	16	30	1.97
43782953--43783182	48	4.9	48	77	8	222	28	17	24	30	1.97
43783009--43783175	90	1.9	90	80	2	201	28	16	24	30	1.96
43786222--43786324	40	2.6	40	73	4	93	25	14	24	35	1.93
43790958--43791182	48	4.8	47	72	11	185	29	16	23	30	1.96
43796207--43796252	22	2.0	24	91	8	78	71	0	8	19	1.11
43796217--43796287	9	7.9	9	75	17	51	76	2	4	16	1.07
43796243--43796284	22	1.9	22	85	9	59	78	4	2	14	1.01
43796221--43796296	19	4.0	18	73	23	59	75	2	3	18	1.08
43796243--43796346	40	2.8	36	79	16	97	71	3	3	21	1.18
43799365--43799446	30	2.7	30	88	0	128	28	9	26	35	1.88
43813186--43813452	40	6.7	40	95	0	480	29	20	28	21	1.98
43822003--43822269	40	6.7	40	95	0	480	29	20	28	21	1.98
43824738--43824775	19	2.0	20	85	15	53	39	23	0	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43824999--43825173	45	3.8	49	78	15	183	28	28	21	21	1.99
43825004--43825173	93	1.8	92	96	1	313	28	29	21	21	1.98
43825592--43825651	30	2.0	30	86	0	84	33	25	5	36	1.78
43832252--43832289	19	2.0	20	85	15	53	39	23	0	36	1.55
43832517--43832687	93	1.8	93	96	0	315	28	29	21	21	1.98
43832512--43832684	46	3.7	46	80	13	219	28	28	21	21	1.98
43840035--43840083	25	2.0	25	95	0	89	34	14	34	16	1.89
43848072--43848188	43	2.7	43	78	8	114	23	21	29	26	1.99
43848103--43848238	43	2.9	45	78	9	141	24	21	27	27	1.99
43855951--43856086	43	3.0	44	77	8	139	22	18	28	30	1.97
43868355--43868396	19	2.2	19	83	8	50	54	0	11	33	1.37
43871852--43872096	49	4.9	50	79	3	262	27	17	26	28	1.97
43871854--43872083	101	2.3	98	83	3	273	27	16	25	29	1.97
43871851--43872128	150	1.9	150	86	4	400	28	16	26	28	1.97
43874366--43874423	29	2.0	29	100	0	116	24	17	13	44	1.85
43877074--43877297	49	4.5	50	79	2	200	26	18	25	29	1.98
43879290--43879323	12	2.8	12	95	0	59	5	38	32	23	1.79
43887897--43887937	22	1.9	22	90	5	66	19	29	41	9	1.83
43892663--43892725	27	2.3	27	86	0	90	25	22	14	38	1.92
43903023--43903100	40	1.9	41	87	7	115	58	3	12	24	1.51
43908784--43908834	19	2.9	17	81	13	59	37	9	17	35	1.83
43908794--43908836	19	2.1	21	91	8	72	37	9	18	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43909561--43909629	33	2.1	33	97	0	129	27	11	17	43	1.83
43911876--43911958	31	2.7	31	94	3	143	27	27	15	28	1.96
43912186--43912224	19	2.1	19	90	0	60	33	25	12	28	1.93
43913049--43913113	27	2.4	27	82	5	78	21	24	18	35	1.96
43913171--43913396	27	8.3	27	78	10	158	31	7	19	41	1.79
43913144--43913382	54	4.4	54	75	9	207	31	7	19	41	1.79
43913241--43913490	81	3.1	79	78	5	205	34	6	21	38	1.78
43913349--43913542	81	2.4	81	82	0	226	37	6	21	34	1.80
43913375--43913531	27	5.8	27	87	0	215	39	7	22	30	1.82
43919194--43919296	42	2.4	42	80	4	109	30	24	16	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253