genome.fa.s4.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  69  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20107809--20107880	22	3.1	22	64	24	58	23	29	13	33	1.93
20107713--20107909	47	4.1	47	86	3	225	27	27	9	35	1.87
20111004--20111275	40	6.8	40	92	0	427	24	27	22	25	2.00
20112541--20112649	37	2.9	37	95	0	191	26	31	19	22	1.98
20112795--20112938	50	2.9	50	84	8	186	30	25	6	36	1.82
20112949--20113020	22	3.1	22	64	24	58	22	29	13	34	1.93
20112853--20113049	47	4.1	48	83	5	204	27	27	9	36	1.87
20112795--20112985	97	1.9	99	83	7	246	29	25	8	36	1.85
20116518--20116583	33	2.0	33	82	8	80	31	22	19	25	1.98
20121315--20121415	50	2.0	50	100	0	202	25	15	15	42	1.87
20124468--20124532	22	3.0	22	71	13	62	32	21	24	21	1.98
20125015--20125127	27	4.1	27	73	15	88	34	14	14	37	1.86
20125089--20125175	27	3.2	27	83	0	102	32	8	18	41	1.79
20125077--20125180	27	3.9	26	78	12	86	33	8	18	39	1.81
20125238--20125273	18	1.9	19	88	5	56	25	2	27	44	1.68
20125257--20125326	26	2.6	27	88	4	106	31	7	20	41	1.79
20125315--20125418	27	3.9	27	85	0	145	28	20	16	34	1.94
20127393--20127474	41	2.0	41	100	0	164	29	19	19	31	1.96
20128617--20128739	41	3.0	41	87	0	165	26	28	24	20	1.99
20128996--20129229	27	8.7	27	77	8	163	30	9	20	39	1.85
20128983--20129148	81	2.0	82	80	7	187	30	9	17	42	1.81
20129216--20129255	18	2.2	18	90	0	62	27	2	25	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20129238--20129300	26	2.4	26	91	2	99	31	4	22	41	1.74
20129297--20129400	27	3.9	27	87	2	138	29	22	15	32	1.94
20132334--20132395	22	2.8	23	85	7	83	30	20	25	22	1.98
20132541--20132661	41	3.0	41	87	2	154	28	28	19	23	1.99
20132930--20133125	27	7.3	27	82	0	185	30	8	19	41	1.81
20132930--20133125	81	2.4	81	83	5	218	30	8	19	41	1.81
20133135--20133203	25	2.6	26	81	9	86	30	7	18	43	1.77
20133198--20133262	27	2.4	27	94	0	121	26	18	16	38	1.92
20133198--20133292	27	3.5	26	85	5	100	29	17	16	35	1.93
20137095--20137254	40	4.0	40	84	3	198	29	26	22	21	1.99
20138795--20138847	23	2.5	21	85	11	56	11	20	5	62	1.49
20138792--20138838	23	2.0	23	100	0	94	12	21	8	57	1.62
20146335--20146787	47	9.6	47	92	1	710	29	28	8	33	1.86
20148425--20148520	40	2.4	40	87	3	131	34	26	15	23	1.95
20158632--20158799	91	1.8	91	93	2	293	28	28	21	21	1.99
20158631--20158796	45	3.7	44	80	7	199	28	28	21	21	1.98
20166106--20166278	46	3.8	45	79	8	215	28	26	21	22	1.99
20166111--20166279	91	1.8	92	93	1	295	28	27	21	21	1.99
20168511--20168684	46	3.8	44	77	13	156	22	28	19	28	1.98
20170238--20170307	24	3.0	23	72	16	65	31	15	24	28	1.96
20173787--20173984	43	4.6	43	87	0	288	31	31	23	13	1.93
20173977--20174051	38	2.0	38	91	0	123	32	26	20	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20178221--20178345	43	2.9	41	88	9	178	29	32	24	14	1.94
20187613--20187687	29	2.6	29	89	2	116	25	13	26	34	1.93
20194813--20194838	12	2.2	12	100	0	52	7	23	26	42	1.81
20199905--20200048	71	2.0	71	100	0	288	40	8	18	32	1.80
20200204--20200236	13	2.6	13	90	4	50	39	0	12	48	1.40
20210206--20210737	47	11.1	47	87	4	722	30	11	30	27	1.92
20210206--20210737	98	5.5	94	89	3	722	30	11	30	27	1.92
20210206--20210737	145	3.7	144	87	5	770	30	11	30	27	1.92
20210547--20210621	23	3.2	23	62	23	57	29	10	32	28	1.90
20210711--20210801	46	2.0	46	84	0	119	32	9	31	25	1.89
20210941--20211052	37	3.0	37	93	0	188	25	18	29	25	1.98
20212322--20212753	40	10.8	40	91	0	666	25	20	27	26	1.99
20216717--20217203	47	10.1	47	86	6	650	31	12	29	26	1.93
20216717--20217203	98	5.0	94	89	4	652	31	12	29	26	1.93
20216717--20217203	145	3.3	145	90	4	739	31	12	29	26	1.93
20216936--20217011	24	3.2	24	62	23	61	28	13	32	25	1.93
20217177--20217267	46	2.0	46	84	0	119	32	9	31	25	1.89
20216728--20217252	245	2.2	244	89	5	764	31	12	29	25	1.93
20217407--20217481	37	2.0	37	94	0	132	26	18	29	25	1.98
20222433--20222519	12	7.5	11	73	13	54	18	4	2	74	1.09
20222421--20222471	27	1.9	26	88	4	75	17	1	3	76	1.03
20222433--20222499	6	10.8	6	74	6	53	16	4	2	76	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20225958--20226018	29	2.1	28	90	3	95	29	14	27	27	1.95
20225965--20226109	29	5.1	29	78	3	125	26	14	31	27	1.95
20228171--20228202	15	2.1	15	94	0	55	43	6	12	37	1.68
20228343--20228403	29	2.1	29	100	0	122	29	13	6	50	1.66
20234391--20234445	29	1.9	28	85	10	76	23	20	23	32	1.98
20239458--20239501	17	2.6	17	85	7	54	54	0	0	45	0.99
20239461--20239531	25	2.8	25	75	14	65	53	0	2	43	1.15
20239463--20239531	17	4.1	17	75	17	56	52	0	2	44	1.16
20239474--20239533	25	2.4	25	80	5	68	53	0	5	41	1.23
20246027--20246081	26	2.1	26	96	0	101	14	16	27	41	1.87
20250231--20250294	30	2.2	29	88	2	92	26	17	20	35	1.94
20258732--20258895	39	4.2	39	92	0	256	25	22	28	23	1.99
20267044--20267106	30	2.1	30	84	3	81	31	22	7	38	1.83
20276647--20276706	27	2.3	27	85	2	77	21	23	20	35	1.96
20277429--20277540	48	2.3	48	86	3	163	27	32	17	22	1.97
20280665--20280694	14	2.1	14	93	0	51	63	13	6	16	1.50
20291750--20292043	40	7.5	40	87	6	388	24	22	28	25	1.99
20291758--20292043	75	3.7	76	86	7	337	24	21	27	25	1.99
20291746--20292017	115	2.3	118	87	5	390	24	21	27	26	1.99
20294150--20296174	47	42.6	47	92	3	2830	28	28	9	33	1.88
20294150--20296174	429	4.7	426	89	4	2914	28	28	9	33	1.88
20297440--20297618	85	2.1	85	98	0	349	26	27	8	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20300083--20300194	27	4.1	27	79	7	111	16	26	20	36	1.93
20300087--20300192	54	2.0	54	84	3	142	16	27	17	37	1.92
20303791--20303889	29	3.5	29	79	4	121	31	12	27	29	1.92
20303791--20303913	57	2.2	57	89	1	185	28	13	28	29	1.95
20303811--20303907	28	3.4	28	81	2	122	29	14	28	26	1.95
20323165--20323245	27	3.0	27	100	0	162	7	18	11	62	1.50
20323170--20323241	14	5.3	14	68	18	62	5	18	11	65	1.43
20326273--20326332	14	4.5	13	74	15	52	36	3	0	60	1.14
20326265--20326298	16	2.0	18	88	11	54	29	2	0	67	1.05
20326273--20326316	21	2.1	21	82	0	52	36	2	0	61	1.09
20326283--20326331	25	1.9	26	84	12	66	36	4	0	59	1.17
20336983--20337202	60	3.7	60	82	3	257	29	18	14	38	1.90
20339760--20339978	46	4.7	46	81	9	275	29	27	21	22	1.99
20339811--20339981	93	1.8	93	96	0	315	29	28	20	22	1.98
20345206--20345255	25	2.0	25	84	0	64	34	22	16	28	1.95
20345292--20345358	20	3.3	20	87	0	98	34	10	20	34	1.87
20345408--20345550	24	6.0	24	85	4	182	30	23	20	25	1.99
20345407--20345529	47	2.6	47	86	1	183	31	23	18	26	1.97
20345706--20345769	31	2.1	31	90	0	101	35	15	23	25	1.94
20347741--20347772	16	2.0	16	93	0	55	34	18	0	46	1.49
20347967--20348354	50	7.7	50	75	4	350	32	24	17	25	1.97
20347992--20348086	49	1.9	49	84	0	127	36	21	15	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20348170--20348359	101	1.9	101	87	0	281	30	25	19	25	1.98
20347970--20348361	151	2.6	151	92	0	633	32	24	17	25	1.97
20348709--20348755	19	2.3	20	82	10	60	48	14	0	36	1.44
20348977--20349035	30	2.0	30	82	0	73	27	23	6	42	1.79
20351478--20351543	31	2.2	31	84	10	84	21	16	4	57	1.57
20354482--20354527	23	2.0	23	95	0	83	45	13	10	30	1.77
20360482--20360625	46	3.1	46	71	16	127	29	27	20	22	1.98
20376469--20376503	16	2.2	16	94	0	61	25	0	28	45	1.54
20380650--20380835	48	3.9	48	75	2	185	26	20	29	23	1.99
20380660--20380834	96	1.8	96	83	2	235	27	20	28	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253