genome.fa.s4.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  197  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64731522--64731833	40	7.8	40	89	0	453	24	20	27	26	1.99
64735765--64736266	47	10.6	47	94	2	846	33	8	28	29	1.86
64736385--64736529	37	3.9	37	93	0	236	22	20	31	24	1.98
64740545--64740573	15	1.9	15	100	0	58	37	0	0	62	0.96
64743885--64743934	21	2.5	21	81	15	61	34	10	12	44	1.75
64748433--64748472	6	6.8	6	94	5	73	0	30	0	70	0.88
64751334--64751481	43	3.5	42	78	5	156	26	16	26	30	1.97
64751356--64751468	41	2.7	43	79	8	133	27	16	26	29	1.97
64768031--64768074	11	4.0	11	96	0	79	56	9	15	18	1.65
64768120--64768167	23	2.2	22	85	7	62	45	14	14	25	1.83
64768206--64768235	14	2.1	15	93	6	53	0	43	0	56	0.99
64771511--64771672	43	3.8	42	77	8	157	25	17	25	32	1.97
64777467--64777578	25	4.5	25	80	0	98	38	21	14	25	1.91
64782033--64782058	12	2.2	12	100	0	52	50	7	0	42	1.31
64782505--64782602	27	3.5	28	90	2	135	26	13	28	31	1.94
64782533--64782615	27	3.0	27	87	5	96	30	12	25	32	1.92
64789984--64790009	12	2.2	12	100	0	52	50	7	0	42	1.31
64790456--64790553	27	3.5	28	90	2	135	26	13	28	31	1.94
64790484--64790566	27	3.0	27	87	5	96	30	12	25	32	1.92
64796074--64796108	17	2.1	17	100	0	70	37	22	11	28	1.89
64801365--64801515	42	3.7	41	84	3	196	24	14	28	32	1.94
64801493--64801552	28	2.1	28	84	0	75	30	10	30	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64815831--64815910	15	5.4	15	70	18	60	60	12	15	12	1.60
64818855--64819027	93	1.9	93	87	0	256	28	29	21	20	1.98
64818848--64819023	46	3.8	46	75	12	162	30	28	21	19	1.98
64820153--64820182	12	2.5	12	100	0	60	63	10	6	20	1.47
64830577--64830635	27	2.1	29	81	6	68	11	10	5	72	1.25
64830666--64830734	22	3.0	23	79	12	79	40	0	5	53	1.25
64830729--64830845	21	5.3	22	68	19	64	37	1	0	59	1.13
64830696--64830830	33	4.0	33	90	8	193	38	1	1	58	1.16
64830787--64830845	20	2.8	20	80	12	66	38	0	0	61	0.96
64830776--64830834	14	4.9	13	76	21	58	38	0	0	61	0.96
64830702--64830847	34	4.3	33	86	6	109	40	1	1	56	1.16
64830795--64830845	21	2.4	21	90	6	77	39	0	0	60	0.97
64830704--64830854	68	2.2	69	82	9	186	41	1	1	56	1.16
64830795--64830853	21	2.8	21	84	7	75	42	0	0	57	0.98
64830808--64831249	161	2.7	161	97	0	821	41	2	3	52	1.32
64830764--64831015	91	2.7	91	69	16	207	41	2	1	54	1.25
64831120--64831156	12	2.9	14	80	19	53	37	2	0	59	1.12
64831234--64831297	13	4.6	14	74	14	51	34	1	1	62	1.14
64831224--64831295	20	3.3	21	78	9	74	34	1	1	62	1.13
64831706--64831773	21	3.1	21	85	6	82	55	1	0	42	1.08
64831720--64831809	21	4.7	20	70	20	75	56	2	0	41	1.11
64831771--64831851	23	3.5	22	77	14	74	51	4	0	43	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64831766--64831835	25	2.9	23	76	16	61	54	4	0	41	1.20
64831763--64831866	47	2.2	48	82	5	131	56	3	0	39	1.17
64831911--64831944	16	2.1	16	89	10	52	82	0	11	5	0.83
64835199--64835258	24	2.5	24	86	5	77	21	43	5	30	1.74
64835220--64835276	24	2.4	24	81	0	69	22	36	5	35	1.77
64837660--64837828	92	1.8	91	85	10	234	27	27	17	28	1.97
64846677--64846839	46	3.5	46	78	7	145	26	30	16	26	1.97
64855805--64855869	27	2.4	27	87	7	87	32	0	1	66	1.01
64855807--64855876	25	2.8	24	74	21	70	34	0	1	64	1.03
64856075--64856110	17	2.1	17	90	10	56	5	27	30	36	1.80
64856215--64856270	17	2.9	19	76	17	53	73	0	26	0	0.84
64856202--64856274	27	2.7	27	80	15	80	71	0	28	0	0.87
64856202--64856275	20	3.5	20	80	10	69	71	0	28	0	0.86
64857276--64857366	30	2.9	33	70	18	95	35	0	9	54	1.34
64857276--64857394	60	2.0	60	85	3	159	35	0	11	52	1.44
64862516--64862560	24	1.9	23	86	4	63	15	17	17	48	1.81
64862627--64862756	27	4.8	27	86	0	143	28	26	24	20	1.99
64862792--64862852	29	2.1	28	85	8	79	70	1	0	27	0.97
64864351--64864380	15	2.0	15	93	0	51	63	0	0	36	0.95
64867372--64867417	21	2.3	20	82	14	51	69	4	0	26	1.07
64867862--64867904	18	2.4	18	88	0	59	18	4	2	74	1.10
64871371--64871516	29	5.2	28	75	8	109	66	3	2	27	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64871373--64871516	9	15.4	9	69	18	73	65	3	2	27	1.22
64871428--64871516	20	4.7	19	75	13	76	68	3	3	24	1.20
64874519--64874736	40	5.5	40	89	4	309	23	23	27	25	2.00
64876735--64876777	19	2.3	19	84	4	61	23	6	2	67	1.27
64877888--64877944	22	2.6	24	75	25	63	38	3	0	57	1.16
64877888--64877946	23	2.6	24	75	24	65	38	3	0	57	1.15
64890322--64890396	37	2.0	37	94	0	132	30	10	24	34	1.89
64897368--64897422	26	2.1	26	96	0	101	30	5	27	36	1.79
64897385--64897459	37	2.0	37	97	0	141	30	9	24	36	1.87
64906598--64907044	44	10.2	44	87	0	628	32	15	27	24	1.95
64906598--64907044	132	3.4	132	90	0	691	32	15	27	24	1.95
64909923--64910248	131	2.5	130	79	6	302	25	18	22	33	1.96
64915480--64915524	22	2.0	22	95	0	81	22	11	33	33	1.89
64920631--64920690	30	2.0	30	100	0	120	26	26	20	26	1.99
64922699--64922764	19	3.2	21	87	6	64	36	19	9	34	1.84
64922716--64922813	19	5.2	19	87	7	146	35	15	9	39	1.79
64922716--64922813	36	2.6	37	87	9	135	35	15	9	39	1.79
64923144--64923235	44	2.1	44	83	6	114	26	23	15	34	1.94
64923550--64924162	84	7.3	84	86	4	821	24	20	23	30	1.98
64923630--64924109	41	11.5	41	65	18	179	24	21	23	30	1.99
64925111--64925174	8	8.9	7	76	20	53	3	14	0	82	0.78
64925109--64925176	21	3.2	20	78	10	82	2	13	0	83	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64931257--64931441	40	4.7	40	82	6	189	24	21	27	26	1.99
64931310--64931474	79	2.1	79	79	6	174	25	20	27	26	1.99
64935358--64935423	19	3.2	21	87	6	64	36	19	9	34	1.84
64935375--64935436	19	3.2	19	95	4	106	35	17	9	37	1.83
64936921--64937011	19	4.9	19	86	8	134	36	10	16	36	1.84
64936912--64937034	36	3.3	35	76	17	106	35	10	15	38	1.82
64936932--64936999	17	3.9	16	81	12	73	36	8	14	39	1.78
64936932--64936999	18	3.8	17	86	7	91	36	8	14	39	1.78
64936932--64936999	35	1.9	36	93	3	120	36	8	14	39	1.78
64942889--64942949	30	2.0	30	83	0	77	31	22	8	37	1.84
64948847--64949281	208	2.1	209	86	2	624	31	19	23	25	1.98
64949146--64949440	78	3.8	78	85	3	405	31	18	24	25	1.98
64949454--64949647	45	4.3	45	87	2	239	33	15	26	24	1.95
64949974--64950011	17	2.5	15	80	19	51	39	10	15	34	1.82
64949980--64950041	17	3.5	17	82	8	79	35	12	14	37	1.85
64949972--64950041	35	1.9	37	88	8	108	35	11	15	37	1.84
64950311--64950346	18	1.9	19	88	5	56	30	0	0	69	0.89
64955566--64955759	43	4.6	43	77	8	184	30	26	14	27	1.95
64963796--64963865	28	2.5	28	83	4	88	28	27	15	28	1.96
64970656--64970687	16	2.0	16	100	0	64	37	18	6	37	1.76
64980640--64980775	46	3.0	46	85	1	184	19	21	13	46	1.83
64988232--64988390	43	3.7	43	73	10	139	26	16	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64988234--64988394	85	1.9	86	85	3	227	26	16	24	32	1.96
64997116--64997154	16	2.4	16	83	8	53	71	10	7	10	1.30
65001965--65002068	39	2.6	40	86	6	140	28	20	24	26	1.99
65001981--65002120	40	3.5	40	85	6	160	24	20	26	29	1.99
65005302--65005365	33	2.0	33	87	3	94	34	20	23	21	1.97
65012698--65012757	27	2.3	26	85	2	75	35	20	23	21	1.96
65015728--65015785	30	1.9	30	89	0	89	31	12	17	39	1.86
65017721--65017838	59	2.0	59	100	0	236	23	15	13	47	1.81
65021940--65022039	44	2.3	42	80	8	112	26	18	22	34	1.96
65024860--65025216	45	8.0	44	76	4	164	33	26	15	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253