genome.fa.s4.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  98  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30626013--30626056	22	2.0	22	90	0	70	50	4	0	45	1.22
30626077--30626117	21	1.9	22	90	5	66	43	2	0	53	1.13
30627415--30627673	86	3.0	86	85	3	344	27	17	26	28	1.98
30627395--30627663	43	6.3	43	83	6	312	28	17	25	28	1.98
30633331--30633479	43	3.5	42	75	13	126	23	20	24	30	1.98
30635402--30635513	27	4.1	27	79	7	120	36	22	23	17	1.95
30636758--30636800	22	2.0	22	85	0	59	67	2	23	6	1.27
30647598--30647673	37	2.1	37	97	0	143	32	14	15	36	1.88
30650647--30650824	27	6.6	27	83	3	205	26	15	28	29	1.96
30650648--30650803	82	1.9	81	88	3	233	26	15	28	29	1.96
30650644--30650824	82	2.2	81	83	2	229	27	15	27	29	1.96
30658783--30658954	27	6.6	27	82	8	185	26	15	29	29	1.96
30669064--30669241	27	6.6	27	84	3	205	29	28	15	26	1.96
30669085--30669240	82	1.9	81	88	3	233	29	28	15	26	1.96
30677242--30677419	27	6.6	27	84	3	205	29	28	15	26	1.96
30677263--30677418	82	1.9	81	88	3	233	29	28	15	26	1.96
30681794--30682057	40	6.7	40	90	2	365	28	27	21	22	1.99
30681809--30682057	119	2.1	120	87	3	360	28	26	21	23	1.99
30687435--30687476	21	2.0	20	90	4	66	11	28	0	59	1.33
30690718--30691026	41	7.6	40	78	6	291	22	28	14	34	1.93
30690717--30691017	81	3.7	80	76	8	293	22	28	15	34	1.94
30697450--30697486	17	2.1	18	90	5	58	13	45	32	8	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30711835--30712019	40	4.7	40	81	6	207	25	27	22	24	2.00
30711835--30712019	79	2.3	82	81	7	211	25	27	22	24	2.00
30714601--30714631	11	2.8	11	100	0	62	32	9	19	38	1.84
30718288--30718337	19	2.7	19	81	3	66	24	40	26	10	1.86
30724286--30724478	40	4.8	40	90	1	219	27	27	20	23	1.99
30735442--30735607	43	3.9	43	80	6	176	24	18	24	33	1.96
30742064--30742219	27	5.7	27	78	6	145	27	28	16	28	1.97
30742069--30742220	54	2.8	55	80	4	182	26	27	16	28	1.97
30750116--30750271	27	5.7	27	78	6	145	27	28	16	28	1.97
30750121--30750272	54	2.8	55	80	4	182	26	27	16	28	1.97
30757792--30757877	43	2.0	43	84	13	115	30	30	16	23	1.96
30759643--30759688	12	3.7	13	74	8	51	26	8	10	54	1.64
30759609--30759701	25	3.7	25	88	0	123	26	12	8	51	1.69
30760519--30760651	45	3.0	45	90	0	212	23	20	27	28	1.99
30770329--30770479	54	2.8	54	80	8	173	29	16	27	27	1.97
30770330--30770484	27	5.7	27	78	7	145	28	16	27	27	1.97
30778429--30778498	28	2.6	27	86	2	86	28	20	28	22	1.98
30778374--30778525	55	2.8	53	81	4	178	28	16	27	26	1.97
30778375--30778530	27	5.7	27	78	6	145	28	16	28	27	1.97
30786982--30787045	22	2.9	22	97	0	119	21	23	18	35	1.95
30786939--30787074	45	3.0	45	74	14	127	22	22	19	36	1.95
30792192--30792244	7	7.3	7	83	8	61	43	39	0	16	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30792197--30792244	15	3.3	15	85	2	71	43	39	0	16	1.48
30798024--30798081	20	2.9	20	81	0	71	17	12	34	36	1.87
30798574--30798939	48	7.8	48	87	4	539	28	26	18	26	1.98
30798732--30798908	89	2.0	89	92	0	291	29	25	18	25	1.98
30798574--30798926	185	1.9	188	89	4	550	28	26	18	26	1.98
30798576--30798939	137	2.6	139	88	3	527	28	26	18	26	1.98
30802766--30802790	13	1.9	13	100	0	50	52	16	0	32	1.44
30805247--30805402	43	3.6	43	80	9	176	25	17	25	31	1.97
30812377--30812477	44	2.3	44	85	6	127	22	17	24	34	1.96
30812377--30812533	43	3.7	43	74	12	126	26	18	23	31	1.97
30817967--30818142	46	3.8	46	76	14	191	20	19	29	30	1.97
30817964--30818135	93	1.8	93	92	2	292	20	19	29	29	1.97
30825332--30825502	46	3.7	46	75	15	183	21	20	28	29	1.98
30826074--30826115	20	2.1	20	100	0	84	35	11	19	33	1.88
30826165--30826255	23	4.2	22	79	20	104	34	19	17	28	1.95
30826166--30826248	42	2.0	42	86	13	120	31	21	18	28	1.97
30826462--30826523	31	2.1	30	87	6	90	38	16	20	24	1.92
30826881--30827044	83	2.0	81	95	4	294	35	18	11	33	1.87
30828935--30828973	12	3.0	13	85	11	53	20	0	2	76	0.90
30828935--30828973	8	4.6	9	87	9	55	20	0	2	76	0.90
30835501--30835534	4	8.0	4	90	9	50	23	0	5	70	1.09
30835501--30835534	9	4.0	9	96	3	54	23	0	5	70	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30841648--30841695	25	1.9	25	86	0	69	33	25	16	25	1.96
30841734--30841790	9	5.9	9	73	15	51	35	8	21	35	1.84
30841732--30841794	20	3.2	20	95	0	117	36	12	19	31	1.89
30841848--30841963	24	5.0	24	89	9	170	29	21	21	27	1.99
30842156--30842219	31	2.1	31	90	0	101	35	15	23	25	1.94
30849798--30849974	67	2.6	67	80	8	184	31	15	31	22	1.94
30867731--30867930	100	2.0	100	92	0	328	36	20	11	32	1.88
30872278--30872334	29	2.0	28	83	12	73	33	5	26	35	1.79
30872776--30872909	43	3.1	43	68	19	100	26	17	26	29	1.98
30873360--30873391	12	2.6	13	90	9	50	18	6	25	50	1.70
30874270--30874350	25	3.2	25	81	6	92	22	24	19	33	1.97
30879138--30879456	48	6.8	48	73	16	201	23	29	18	27	1.98
30879046--30879451	46	8.6	48	77	11	287	23	28	19	28	1.98
30880696--30880894	51	3.9	51	88	1	283	28	22	15	34	1.94
30886506--30886603	27	3.5	28	90	2	135	26	13	28	31	1.94
30886534--30886616	27	3.0	27	87	5	96	30	12	25	32	1.92
30886506--30886617	28	4.0	27	83	6	98	28	12	25	33	1.92
30890673--30890758	27	3.2	27	83	6	104	19	25	19	34	1.96
30890683--30890777	27	3.5	27	81	16	108	21	25	18	34	1.96
30896545--30896715	93	1.8	93	91	2	281	28	29	20	21	1.98
30896537--30896712	46	3.8	46	76	12	189	29	28	19	21	1.98
30899113--30899160	15	3.2	15	80	11	62	58	14	14	12	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30902101--30902238	44	3.1	45	71	13	115	29	28	18	23	1.98
30903933--30904031	41	2.4	41	89	1	146	26	14	31	28	1.95
30909224--30909252	7	4.3	7	95	4	51	0	10	0	89	0.48
30909278--30909322	16	2.7	17	77	22	51	6	4	11	77	1.09
30909280--30909322	15	2.8	16	83	16	56	6	4	11	76	1.13
30911513--30911962	238	1.9	238	85	1	616	25	27	22	24	2.00
30912643--30912786	38	3.8	38	74	6	139	38	25	18	17	1.92
30912643--30912786	76	1.9	76	84	5	193	38	25	18	17	1.92
30913678--30913769	39	2.4	39	92	1	150	36	7	9	45	1.66
30913678--30913787	39	2.8	38	83	6	132	35	9	10	44	1.71
30920570--30920688	6	19.3	6	68	14	55	48	13	17	20	1.80
30920580--30920685	37	2.8	37	81	4	124	49	14	17	18	1.80
30920627--30920688	25	2.5	25	86	0	79	48	14	16	20	1.81
30920811--30920917	27	4.0	26	83	10	135	39	21	21	17	1.93
30922524--30922645	49	2.4	50	83	6	167	26	20	25	27	1.99
30927809--30927952	49	2.9	48	82	4	171	27	20	25	27	1.99
30929351--30929410	22	2.7	21	71	19	50	35	23	21	20	1.96
30929799--30930826	27	38.2	27	85	2	1307	26	19	17	36	1.94
30930785--30931043	27	9.7	26	89	2	284	27	7	22	42	1.81
30932757--30932880	47	2.7	47	90	5	164	29	8	11	51	1.66
30943043--30943177	57	2.4	57	91	0	207	44	8	16	30	1.78
30944875--30945090	40	5.4	41	87	7	286	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30951966--30952027	31	2.0	31	100	0	124	51	12	16	19	1.76
30955855--30955967	42	2.6	44	80	8	135	32	23	18	24	1.97
30960576--30960623	15	3.3	15	73	5	53	43	25	0	31	1.55
30963310--30963357	15	3.3	15	73	5	53	43	27	0	29	1.55
30963579--30963626	23	2.1	22	88	3	69	79	6	4	10	1.05
30963594--30963635	18	2.3	19	84	16	61	71	4	4	19	1.22
30963600--30963634	18	2.0	18	94	5	63	74	2	5	17	1.14
30963578--30963620	11	3.8	11	87	3	59	76	4	6	11	1.13
30964663--30964718	30	1.9	28	85	7	76	53	3	30	12	1.55
30967932--30967991	29	2.1	29	90	0	93	41	28	0	30	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253