genome.fa.s4.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  147  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47016667--47016849	79	2.3	81	84	7	232	24	22	27	25	2.00
47016668--47016851	40	4.6	40	83	9	216	23	22	28	25	2.00
47016720--47016884	79	2.1	79	84	6	210	25	21	27	25	1.99
47018589--47018626	18	2.1	18	100	0	76	39	21	5	34	1.76
47022074--47022183	28	4.0	28	79	8	127	40	11	23	23	1.88
47022077--47022181	56	1.9	55	84	5	140	40	12	22	24	1.89
47023363--47023416	18	3.1	17	73	7	54	48	1	11	38	1.50
47026933--47026975	21	2.0	21	86	8	61	34	32	9	23	1.87
47032159--47032517	47	7.6	46	75	12	216	27	19	29	23	1.98
47032159--47032421	140	1.9	141	82	9	340	27	18	29	24	1.98
47036352--47036390	20	2.0	20	85	10	53	35	20	0	43	1.52
47042580--47042953	39	9.6	39	84	2	457	32	5	18	44	1.72
47042761--47042855	8	12.1	8	73	12	63	35	3	16	44	1.64
47046334--47046385	18	2.8	18	79	2	59	46	15	5	32	1.70
47046494--47047104	70	8.7	70	79	3	532	26	19	25	29	1.98
47046495--47047082	210	2.8	210	80	3	646	27	19	24	29	1.98
47051197--47051246	25	2.0	25	92	0	82	30	6	18	46	1.73
47060952--47060979	13	2.2	13	100	0	56	64	0	14	21	1.29
47062020--47062077	26	2.2	26	84	0	71	17	22	22	37	1.93
47071020--47071234	46	4.6	45	76	15	136	25	30	17	27	1.97
47073165--47073237	28	2.5	28	82	4	83	36	6	26	30	1.82
47074060--47074183	47	2.7	44	80	12	142	27	17	30	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47074057--47074324	94	2.8	93	80	5	254	28	16	29	25	1.97
47074060--47074324	47	5.6	48	72	13	140	28	16	29	25	1.97
47083875--47083924	26	1.9	26	100	0	100	30	8	12	50	1.68
47084582--47084686	55	1.9	54	82	7	131	28	21	27	21	1.99
47089299--47089555	46	5.5	46	76	13	215	29	17	29	23	1.97
47094309--47094364	26	2.1	26	83	3	67	44	16	14	25	1.84
47096197--47096232	7	5.1	7	100	0	72	27	0	55	16	1.42
47097977--47098012	7	5.0	7	86	6	54	58	11	0	30	1.33
47098549--47098579	7	4.4	7	91	0	53	70	0	3	25	1.02
47098645--47098689	18	2.5	19	85	7	58	53	2	2	42	1.25
47101819--47101950	65	2.0	65	97	0	246	38	12	21	26	1.90
47103923--47103966	12	3.7	12	90	0	70	9	0	43	47	1.35
47103923--47103965	6	7.2	6	86	0	59	9	0	41	48	1.35
47103925--47103965	18	2.3	18	95	0	73	7	0	41	51	1.30
47105845--47105879	17	2.0	17	88	5	52	14	40	28	17	1.88
47106618--47106737	58	2.1	58	100	0	240	52	21	12	13	1.73
47115797--47115858	29	2.1	29	82	5	72	32	4	32	30	1.79
47129236--47129703	47	10.1	47	93	2	759	32	9	29	28	1.88
47129236--47129703	139	3.4	140	92	2	757	32	9	29	28	1.88
47129509--47129647	46	3.2	40	88	11	131	33	8	28	29	1.87
47129236--47129703	232	2.0	232	92	0	776	32	9	29	28	1.88
47129822--47129900	37	2.1	37	83	4	97	26	16	30	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47132759--47132833	37	2.0	37	94	0	132	38	24	10	26	1.88
47135582--47135612	11	2.8	11	90	0	53	32	0	0	67	0.91
47135612--47135656	18	2.5	19	82	10	58	64	13	0	22	1.28
47135824--47135866	22	2.0	22	85	0	59	55	9	13	20	1.66
47137304--47137337	14	2.4	14	100	0	68	38	32	5	23	1.79
47138720--47138939	101	2.2	103	90	4	356	18	18	31	31	1.95
47138859--47139009	71	2.1	72	91	2	243	23	16	29	30	1.96
47146347--47146397	26	2.0	26	96	0	93	11	23	35	29	1.90
47146270--47146490	103	2.2	102	93	2	372	18	18	31	31	1.95
47146410--47146560	71	2.1	72	91	2	243	23	16	29	30	1.96
47155465--47155609	40	3.6	40	92	1	238	23	22	28	25	1.99
47163573--47163717	40	3.6	40	94	1	247	23	23	28	24	2.00
47168954--47169032	37	2.1	37	90	0	122	25	31	18	24	1.98
47169150--47169454	46	6.4	47	97	1	517	30	29	7	31	1.86
47169424--47169477	16	3.4	16	76	19	67	37	27	0	35	1.57
47169422--47169486	32	2.0	32	100	0	130	36	27	0	35	1.57
47169375--47169533	79	2.0	79	98	0	309	33	28	5	33	1.79
47169455--47169533	25	3.3	25	64	10	74	34	27	5	32	1.79
47169329--47169580	126	2.0	125	99	0	495	32	28	6	32	1.82
47169454--47169593	47	3.0	47	98	0	271	30	29	8	31	1.87
47173204--47173447	46	5.3	46	90	2	348	20	23	14	40	1.90
47173411--47173479	32	2.2	32	97	0	129	21	21	17	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47173365--47173525	78	2.1	78	97	0	304	22	23	15	37	1.93
47173319--47173555	124	1.9	124	94	1	422	23	23	14	38	1.92
47173443--47173555	46	2.5	46	100	0	226	24	23	14	37	1.92
47176682--47176795	58	2.0	58	89	3	176	35	11	24	28	1.90
47177427--47177462	5	7.0	5	96	3	63	38	0	0	61	0.96
47177702--47177768	33	2.0	33	100	0	134	43	0	29	26	1.55
47178388--47178426	20	2.1	19	90	9	62	41	0	20	38	1.53
47180994--47181047	24	2.3	23	80	6	63	20	25	18	35	1.95
47189753--47189777	11	2.3	11	100	0	50	48	0	8	44	1.32
47191551--47191618	29	2.3	28	80	12	82	57	5	7	29	1.50
47193161--47193215	28	2.0	28	96	0	101	30	14	21	32	1.93
47193439--47193465	6	4.5	6	100	0	54	85	0	14	0	0.61
47196210--47196532	46	7.0	46	86	2	391	40	14	23	21	1.90
47196224--47196546	137	2.4	137	82	3	328	41	15	22	20	1.89
47196813--47196845	17	2.0	17	88	5	50	51	0	12	36	1.39
47203707--47203882	46	3.8	46	74	1	172	23	19	27	29	1.98
47203704--47203874	93	1.8	93	87	0	252	23	19	28	28	1.98
47209390--47209431	18	2.2	20	83	8	52	23	14	11	50	1.76
47226230--47226299	15	4.6	16	75	13	60	14	17	11	57	1.66
47231711--47231745	14	2.5	14	95	0	61	17	14	11	57	1.66
47247505--47247654	28	5.5	27	76	11	126	28	27	17	26	1.97
47255432--47255608	27	6.5	27	78	5	142	28	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47260904--47261068	76	2.2	75	89	6	248	40	23	6	29	1.80
47267580--47267635	6	9.3	6	73	7	51	76	3	3	16	1.06
47269181--47269243	18	3.5	18	72	20	60	60	6	1	31	1.31
47269185--47269258	36	2.0	36	85	12	98	63	5	4	27	1.34
47289815--47289992	40	4.5	40	86	2	216	28	26	20	24	1.99
47289785--47289992	80	2.7	80	82	4	237	27	26	21	24	1.99
47300577--47300752	51	3.5	52	86	8	224	28	15	27	28	1.96
47302375--47302409	18	2.1	17	89	10	54	20	31	34	14	1.92
47319803--47319947	43	3.4	43	83	6	186	31	23	15	29	1.96
47321246--47321325	33	2.4	33	81	10	108	22	25	26	26	2.00
47322358--47322392	18	1.9	18	100	0	70	37	5	22	34	1.78
47329125--47329302	40	4.5	40	87	2	216	29	26	20	22	1.99
47329095--47329302	80	2.7	80	82	4	237	28	26	21	23	1.99
47339890--47340067	51	3.5	52	87	6	233	28	15	28	28	1.96
47341694--47341728	18	2.1	17	89	10	54	20	31	34	14	1.92
47345461--47345697	50	4.7	50	75	1	204	30	24	16	27	1.97
47347245--47347269	13	1.9	13	100	0	50	52	16	0	32	1.44
47348441--47348503	22	2.9	22	76	4	65	22	38	20	19	1.94
47364230--47364374	43	3.4	43	83	6	186	31	23	15	29	1.96
47365673--47365752	33	2.4	33	81	10	108	22	25	26	26	2.00
47366785--47366819	18	1.9	18	100	0	70	37	5	22	34	1.78
47378258--47378409	27	5.6	27	77	8	130	42	20	7	28	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47378248--47378436	81	2.3	82	81	5	206	41	20	8	29	1.82
47378284--47378522	27	8.8	27	79	7	180	40	20	9	30	1.83
47378530--47378617	27	3.3	26	76	9	79	42	20	17	20	1.90
47379427--47379496	25	2.8	25	88	0	95	28	22	21	27	1.99
47379716--47379786	31	2.3	31	92	2	117	30	16	25	26	1.97
47381960--47382296	27	12.5	27	80	1	165	37	21	6	35	1.79
47381992--47382190	54	3.7	54	82	0	227	35	22	5	36	1.78
47381992--47382190	81	2.5	81	84	0	254	35	22	5	36	1.78
47382300--47382351	27	1.9	27	84	7	70	44	13	7	34	1.72
47383279--47383348	25	2.8	25	91	0	104	27	24	22	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253