genome.fa.s4.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  99  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30967938--30967985	15	3.3	15	73	5	53	43	27	0	29	1.55
30970416--30970546	5	26.0	5	69	18	62	3	19	3	74	1.09
30970417--30970541	19	6.8	17	72	20	74	3	19	3	74	1.09
30970417--30970548	23	5.5	23	71	21	69	3	19	3	74	1.09
30970440--30970480	14	2.9	15	85	10	59	0	19	4	75	0.98
30970422--30970544	30	3.9	33	72	19	79	3	19	3	73	1.10
30970417--30970536	6	19.3	6	71	19	70	3	18	3	75	1.09
30975337--30975540	53	3.8	53	77	3	201	37	18	23	20	1.94
30977164--30977239	39	1.9	39	97	0	143	32	10	11	44	1.75
30980264--30980290	10	2.7	10	100	0	54	40	29	11	18	1.85
30980264--30980312	10	4.8	10	85	5	53	36	32	8	22	1.84
30984054--30984176	65	1.9	65	93	0	210	40	16	15	27	1.88
30999862--30999974	57	2.0	58	82	8	142	25	29	15	29	1.96
30999862--30999974	29	3.9	29	84	4	131	25	29	15	29	1.96
31000060--31000098	19	2.1	19	90	0	60	15	30	17	35	1.91
31002127--31002159	17	1.9	17	100	0	66	30	15	18	36	1.91
31003170--31003322	66	2.3	66	96	0	288	33	16	28	21	1.95
31003170--31003352	66	2.8	65	90	5	280	33	15	28	22	1.94
31008774--31008822	16	2.9	16	85	11	55	57	8	0	34	1.29
31010243--31010426	41	4.5	41	85	3	237	36	22	20	20	1.95
31011324--31011371	24	2.0	25	83	4	62	43	14	0	41	1.45
31018442--31018679	49	4.8	49	77	4	199	25	16	26	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31021497--31021700	39	5.3	38	80	13	215	25	21	28	25	1.99
31021444--31021700	40	6.7	40	82	9	259	25	21	28	25	1.99
31021445--31021698	76	3.3	76	83	7	248	25	21	28	24	1.99
31021445--31021733	79	3.8	78	81	9	211	26	21	28	24	1.99
31029277--31029530	75	3.3	75	83	9	275	24	20	28	26	1.99
31029277--31029530	39	6.6	40	81	10	253	24	20	28	26	1.99
31036310--31036596	51	5.7	50	82	6	244	25	18	26	29	1.98
31036370--31036615	51	4.9	50	82	8	259	24	18	26	30	1.98
31036319--31036599	152	1.9	151	82	7	356	24	18	26	30	1.98
31039246--31039363	55	2.1	55	84	6	159	25	22	13	38	1.90
31039971--31040014	20	2.3	19	88	7	70	34	13	25	27	1.93
31039977--31040018	20	2.1	20	100	0	84	38	9	23	28	1.86
31039988--31040062	20	3.8	20	85	0	87	30	14	28	26	1.95
31040950--31040979	16	1.9	15	93	6	51	43	33	3	20	1.68
31042503--31042542	14	2.9	14	84	0	62	20	5	2	72	1.15
31043600--31043717	55	2.1	55	84	6	159	25	22	13	38	1.90
31044328--31044382	20	2.8	20	88	0	83	29	16	29	25	1.97
31051192--31051229	13	2.7	14	92	8	60	15	5	0	78	0.91
31059205--31059307	34	2.9	34	80	8	125	33	8	15	42	1.78
31059205--31059289	37	2.4	37	84	5	104	32	9	14	43	1.77
31059352--31059392	9	4.4	9	81	6	55	21	0	19	58	1.39
31059352--31059392	19	2.2	19	86	4	57	21	0	19	58	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31062939--31063041	34	2.9	34	83	8	134	33	8	14	42	1.77
31063086--31063144	9	6.4	9	84	3	82	22	1	20	55	1.52
31065761--31065809	25	1.9	25	83	4	62	59	16	4	20	1.53
31066494--31066579	46	1.9	45	85	4	120	31	29	18	20	1.97
31070816--31070871	30	1.9	28	85	7	76	12	30	3	53	1.55
31076165--31076216	23	2.3	22	75	21	54	9	23	1	65	1.32
31080834--31080973	44	3.3	43	84	7	169	27	13	24	35	1.93
31087184--31087256	36	2.0	36	100	0	146	42	24	2	30	1.69
31089772--31089800	13	2.2	13	100	0	58	62	6	0	31	1.22
31090343--31090404	30	2.1	30	84	0	79	32	22	8	37	1.83
31091252--31091385	46	3.0	44	83	7	162	24	26	18	29	1.98
31101304--31101355	25	2.1	25	89	3	79	28	19	19	32	1.96
31101311--31101380	25	2.8	24	86	4	86	27	22	22	27	1.99
31101583--31101878	27	11.0	27	87	2	398	24	21	19	34	1.96
31101907--31102035	27	4.8	27	86	0	141	34	9	20	36	1.84
31101907--31102075	54	3.1	54	82	1	160	36	8	19	35	1.83
31101986--31102217	81	2.9	81	86	0	311	41	8	19	30	1.81
31102005--31102224	27	8.1	27	87	0	269	41	7	21	29	1.81
31102005--31102251	81	3.0	81	80	2	244	40	8	21	29	1.82
31102214--31102372	27	6.0	25	72	12	120	30	10	20	38	1.85
31102005--31102251	54	4.6	52	84	5	244	40	8	21	29	1.82
31102201--31102379	80	2.2	82	88	4	256	31	10	18	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31102231--31102372	54	2.6	54	79	9	166	31	9	18	40	1.83
31102229--31102372	53	2.7	52	80	11	159	31	9	18	39	1.83
31114370--31114594	40	5.7	40	85	7	248	25	26	21	26	2.00
31114370--31114594	79	2.8	79	81	10	260	25	26	21	26	2.00
31117424--31117520	30	3.2	31	71	5	92	29	28	14	26	1.95
31124002--31124058	12	4.6	12	91	4	78	75	5	3	15	1.12
31124971--31125027	5	11.0	5	78	17	55	80	0	17	1	0.79
31124975--31125023	25	1.9	25	87	4	71	81	0	16	2	0.78
31124971--31125025	16	3.5	15	90	5	74	81	0	16	1	0.77
31124971--31125014	6	8.2	6	83	16	53	81	0	18	0	0.68
31124960--31125027	21	3.2	20	83	8	82	79	0	17	2	0.86
31125096--31125120	12	2.1	12	100	0	50	76	0	16	8	1.02
31125101--31125152	24	2.2	24	82	0	59	65	0	21	13	1.26
31125090--31125146	18	3.1	18	79	2	60	71	0	19	8	1.11
31133383--31133446	18	3.7	18	70	16	55	62	1	29	6	1.29
31139284--31139308	13	1.9	13	100	0	50	64	8	0	28	1.22
31139533--31139580	10	4.7	10	80	14	53	39	22	22	14	1.91
31141885--31141957	23	3.2	23	77	11	80	75	2	17	4	1.08
31145222--31145253	16	2.0	16	93	0	55	40	18	9	31	1.83
31147479--31147522	22	2.0	22	100	0	88	68	18	0	13	1.22
31151437--31151642	39	5.3	39	92	0	333	17	20	30	32	1.96
31156284--31156461	27	6.6	27	83	3	196	29	29	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31156284--31156461	54	3.3	54	86	3	232	29	29	15	26	1.96
31156305--31156460	81	1.9	82	88	1	233	28	29	15	26	1.96
31164402--31164579	27	6.6	27	82	3	178	29	28	15	26	1.96
31164402--31164579	54	3.3	54	84	3	223	29	28	15	26	1.96
31174022--31174146	27	4.7	26	75	9	99	40	23	8	28	1.84
31174016--31174168	54	2.8	54	76	5	148	39	22	9	28	1.84
31174099--31174162	27	2.4	27	81	5	76	40	20	10	28	1.86
31174174--31174497	27	12.0	27	87	2	436	30	20	7	41	1.79
31174733--31174784	27	2.0	26	84	3	68	17	26	21	34	1.95
31174999--31175086	6	14.3	6	75	17	83	18	17	17	47	1.83
31174999--31175077	31	2.5	31	91	0	122	17	17	16	48	1.82
31179356--31179477	46	2.7	46	93	0	199	29	27	21	21	1.98
31179353--31179496	46	3.1	45	76	16	143	30	27	20	20	1.98
31181828--31182005	27	6.6	27	83	3	205	26	15	28	29	1.96
31181829--31181984	82	1.9	81	88	3	233	26	15	28	29	1.96
31181825--31182005	82	2.2	81	83	2	229	27	15	27	29	1.96
31190759--31190790	11	2.9	11	100	0	64	75	9	0	15	1.05
31190784--31190821	18	2.2	18	86	9	53	73	5	7	13	1.22
31191830--31191860	12	2.6	12	100	0	62	45	12	16	25	1.83
31191863--31191944	30	2.7	31	79	5	96	65	1	20	12	1.32
31194915--31194940	12	2.2	12	100	0	52	92	0	7	0	0.39
31195820--31195854	18	1.9	18	88	11	54	57	0	20	22	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31204246--31204332	43	2.0	43	82	8	106	29	27	18	24	1.98
31218036--31218080	24	1.9	24	86	4	65	17	15	15	51	1.77
31218957--31218996	21	2.0	20	85	14	55	30	22	12	35	1.91
31220018--31220051	11	3.1	11	100	0	68	44	0	0	55	0.99
31222738--31222825	30	2.9	30	74	0	104	28	27	15	28	1.96
31224523--31224562	10	3.9	10	87	6	62	80	2	2	15	0.93
31224522--31224561	11	3.7	11	83	6	55	82	2	2	12	0.87
31224523--31224566	21	2.1	21	100	0	88	77	4	4	13	1.08
31225421--31225491	37	1.9	37	86	11	101	76	2	18	2	1.04
31225431--31225480	6	8.2	6	83	14	50	76	2	20	2	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253