genome.fa.s4.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  151  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48462485--48463082	242	2.5	240	94	1	1040	30	26	6	36	1.82
48469744--48470017	40	6.8	40	82	0	305	37	15	28	18	1.92
48469832--48469897	20	3.3	20	69	0	60	31	16	34	16	1.92
48469744--48470017	121	2.3	120	84	4	347	37	15	28	18	1.92
48471639--48471721	27	3.1	27	76	10	91	36	19	21	22	1.95
48471857--48471947	27	3.4	27	87	3	121	24	17	17	40	1.90
48471927--48472039	27	4.2	27	80	6	140	31	12	19	36	1.89
48471899--48472033	54	2.5	54	81	9	168	31	13	17	37	1.89
48478488--48478524	16	2.3	16	95	0	65	59	5	27	8	1.48
48484540--48484621	34	2.4	34	80	8	87	25	23	24	26	2.00
48486382--48486430	22	2.1	24	85	7	66	22	51	0	26	1.49
48487211--48487337	47	2.7	49	77	3	134	22	14	25	37	1.92
48487667--48487716	19	2.7	18	90	9	82	38	2	12	48	1.52
48489279--48489489	40	5.3	40	83	3	257	25	26	23	24	2.00
48495087--48495134	19	2.6	19	86	3	71	35	2	14	47	1.56
48495159--48495242	42	2.0	42	92	0	141	30	10	14	44	1.79
48498289--48498322	17	2.0	17	100	0	68	35	5	23	35	1.79
48504180--48504688	251	2.0	252	87	6	742	45	7	27	20	1.77
48508724--48508828	27	3.9	27	89	0	156	30	22	7	39	1.82
48508713--48508830	54	2.2	54	82	0	173	33	21	7	37	1.82
48508805--48508972	54	3.1	53	76	5	140	41	20	6	30	1.78
48508840--48508971	27	4.9	27	79	5	133	43	21	6	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48508983--48509034	27	1.9	27	84	7	70	38	13	13	34	1.84
48509088--48509152	27	2.4	27	84	5	87	35	20	24	20	1.96
48509962--48510031	25	2.8	25	86	0	95	28	24	21	25	1.99
48509962--48510056	25	3.8	25	81	4	84	29	23	22	25	1.99
48512066--48512102	15	2.4	16	86	13	51	35	13	2	48	1.57
48516231--48516295	24	2.7	24	87	0	94	29	12	6	52	1.63
48519745--48519782	20	1.9	20	89	10	60	63	0	2	34	1.09
48519718--48519785	29	2.3	28	85	7	82	58	4	1	35	1.27
48519836--48519870	17	2.1	17	89	5	54	57	0	5	37	1.23
48520136--48520175	21	2.0	19	85	9	53	20	2	7	70	1.24
48520162--48520365	9	22.3	9	66	17	91	29	4	2	62	1.29
48520287--48520366	38	2.1	38	81	9	92	30	2	5	62	1.29
48521608--48521695	44	2.0	44	97	0	167	44	9	10	36	1.70
48523198--48523226	13	2.2	13	100	0	58	55	13	0	31	1.39
48529767--48529795	13	2.2	13	100	0	58	55	13	0	31	1.39
48541721--48541889	49	3.5	49	70	14	136	28	18	30	23	1.97
48543011--48543082	22	3.3	22	88	7	119	13	41	25	19	1.88
48549286--48549412	46	2.7	46	87	4	157	29	18	27	23	1.98
48549426--48549607	99	1.9	96	85	5	249	24	18	31	24	1.97
48550730--48550791	21	2.9	21	85	2	88	12	38	27	20	1.90
48551403--48551457	28	2.0	28	92	3	94	25	12	32	29	1.93
48561703--48561868	40	4.2	40	89	2	246	29	27	20	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48569506--48569539	15	2.3	15	89	0	50	32	0	8	58	1.29
48572574--48572622	25	2.0	25	83	0	62	32	10	24	32	1.89
48574322--48574415	40	2.3	40	87	7	129	28	30	13	26	1.94
48579735--48579919	40	4.7	40	79	7	182	24	20	28	26	1.99
48579788--48579942	79	2.0	79	82	7	190	25	20	27	27	1.99
48589455--48589482	13	2.2	13	100	0	56	28	0	14	57	1.38
48589478--48589521	23	1.9	23	81	9	54	63	0	11	25	1.27
48590906--48591111	40	5.2	40	92	1	326	23	21	26	28	1.99
48597595--48597622	13	2.2	13	100	0	56	28	0	14	57	1.38
48599036--48599241	40	5.2	40	92	0	333	23	21	26	28	1.99
48602835--48602862	3	9.3	3	100	0	56	35	0	0	64	0.94
48612844--48613115	40	6.8	41	86	4	358	24	20	28	26	1.99
48612861--48613135	120	2.3	120	95	0	489	24	20	28	26	1.99
48615769--48615808	20	2.0	21	90	5	64	70	0	12	17	1.18
48637564--48637715	53	2.8	54	79	5	164	23	25	15	35	1.94
48637526--48637731	49	3.9	52	74	11	134	22	25	15	36	1.93
48640395--48640455	30	2.0	30	83	0	77	31	22	8	37	1.84
48648101--48648131	16	1.9	16	93	0	53	35	22	0	41	1.54
48648098--48648137	20	2.0	20	85	0	53	37	22	0	40	1.54
48648210--48648254	23	1.9	24	90	4	74	22	20	11	46	1.81
48648326--48648578	55	4.8	54	79	9	197	22	24	16	36	1.94
48651278--48651388	43	2.6	43	80	9	122	22	18	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48654338--48654487	67	2.2	67	81	8	171	32	17	28	21	1.96
48654362--48654545	67	2.8	64	77	8	194	29	17	29	22	1.97
48656557--48656645	43	2.1	43	91	0	142	11	20	37	31	1.88
48657718--48657921	101	2.0	101	100	0	408	27	9	24	37	1.87
48663089--48663156	34	2.0	34	97	0	127	33	22	11	32	1.90
48674814--48674991	27	6.6	27	84	3	205	29	28	15	26	1.96
48674835--48674990	82	1.9	81	88	3	233	29	28	15	26	1.96
48682928--48683105	27	6.6	27	84	3	205	29	28	15	26	1.96
48682949--48683104	82	1.9	81	88	3	233	29	28	15	26	1.96
48693646--48693766	54	2.2	54	88	2	172	32	24	19	23	1.97
48696042--48696071	12	2.6	12	94	5	53	40	26	0	33	1.57
48698467--48698650	40	4.6	39	82	6	194	25	22	27	25	2.00
48698467--48698648	78	2.3	80	83	6	219	25	22	27	24	2.00
48708002--48708057	24	2.3	24	100	0	112	28	32	10	28	1.90
48710495--48710665	43	4.0	44	78	8	165	24	15	25	33	1.95
48716266--48716359	42	2.2	43	79	11	104	32	22	18	26	1.97
48716247--48716359	43	2.7	43	78	8	115	32	23	17	26	1.97
48718286--48718544	129	2.0	129	90	1	412	33	23	11	31	1.91
48724419--48724497	29	2.7	29	86	5	106	27	32	15	24	1.95
48732757--48732835	29	2.7	29	86	5	106	27	32	15	24	1.95
48735772--48735985	40	5.4	40	89	5	289	25	28	21	24	1.99
48735772--48735985	78	2.7	77	87	9	285	25	28	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48743784--48743999	40	5.4	40	85	6	253	26	27	21	24	1.99
48748392--48748444	23	2.3	23	83	0	61	30	22	13	33	1.92
48748426--48748502	24	3.4	22	77	8	73	31	22	12	33	1.92
48754698--48754729	15	2.0	17	88	11	50	31	3	18	46	1.65
48780004--48780045	18	2.3	18	87	0	57	50	7	7	35	1.57
48780011--48780047	18	2.1	18	94	0	65	43	8	5	43	1.57
48788142--48788191	21	2.4	21	90	3	75	44	0	16	40	1.47
48788783--48788909	23	5.4	23	74	10	96	29	19	18	33	1.95
48791583--48791744	35	4.6	35	79	0	153	41	27	13	17	1.87
48791591--48791725	70	1.9	71	86	1	191	40	27	14	17	1.88
48791588--48791744	70	2.2	70	82	1	188	40	28	14	17	1.88
48791664--48791754	35	2.6	35	85	0	110	36	27	15	20	1.93
48794528--48794700	46	3.8	46	92	0	283	24	32	8	34	1.86
48794724--48794870	47	3.1	47	96	0	258	26	28	10	34	1.89
48803669--48803931	40	6.6	40	87	3	316	24	20	28	26	1.99
48803708--48803966	80	3.3	80	84	3	238	25	20	28	25	1.99
48806260--48806341	31	2.7	31	92	3	132	28	26	15	29	1.96
48806548--48806631	25	3.4	24	84	9	98	27	22	20	29	1.98
48806561--48806630	25	2.8	25	93	0	113	27	22	22	27	1.99
48806736--48806766	16	1.9	16	100	0	62	38	45	6	9	1.63
48807430--48807495	27	2.4	27	82	5	80	19	19	21	39	1.93
48807499--48807766	27	9.9	27	74	9	163	30	10	18	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48807499--48807733	54	4.3	54	79	3	211	30	8	19	41	1.81
48807611--48807766	81	1.9	81	84	7	210	28	9	19	42	1.82
48807765--48807829	27	2.4	27	92	0	112	44	9	20	26	1.81
48814680--48814770	46	2.0	46	100	0	182	48	13	10	27	1.75
48815017--48815319	94	3.3	91	82	5	335	24	28	19	27	1.99
48815017--48815225	46	4.5	45	75	12	183	24	28	19	27	1.99
48822298--48822329	11	2.9	11	95	0	55	6	25	9	59	1.52
48824744--48824928	79	2.3	81	80	8	209	24	28	23	24	2.00
48824725--48824928	40	5.1	40	80	8	220	24	27	23	25	2.00
48832912--48833096	40	4.7	40	81	6	207	24	28	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253