genome.fa.s4.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  114  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35885844--35885959	36	3.2	37	86	4	157	27	29	17	25	1.97
35886090--35886182	48	2.0	47	87	6	134	31	25	7	35	1.84
35886143--35886329	46	4.1	46	86	4	247	27	30	10	32	1.90
35890161--35890216	25	2.2	26	81	12	71	28	30	10	30	1.91
35890392--35890663	40	6.8	40	93	0	454	24	28	22	24	2.00
35891927--35892035	37	2.9	37	94	0	182	26	30	19	23	1.98
35892240--35892433	47	4.1	47	90	0	289	26	29	10	32	1.90
35892333--35892404	22	3.1	22	64	24	58	23	29	13	33	1.93
35895346--35895652	40	7.6	40	82	8	372	27	27	22	23	1.99
35895346--35895648	83	3.7	83	90	2	445	26	27	22	23	1.99
35895346--35895652	123	2.5	121	85	6	424	27	27	22	23	1.99
35897983--35898050	20	3.4	20	100	0	136	48	10	4	36	1.57
35917081--35917128	25	1.9	25	82	0	60	35	25	14	25	1.94
35917172--35917210	20	2.0	20	100	0	78	35	12	20	30	1.90
35917262--35917310	23	2.1	23	96	0	89	32	18	20	28	1.96
35917262--35917331	23	3.0	23	87	8	79	30	20	22	27	1.98
35917524--35917587	31	2.1	31	90	0	101	35	15	23	25	1.94
35925402--35925457	11	5.5	11	71	16	57	35	12	19	32	1.89
35925391--35925457	20	3.3	20	93	0	116	34	11	20	32	1.90
35925507--35925608	23	4.4	24	88	6	140	29	17	22	30	1.97
35925816--35925879	31	2.1	31	90	0	101	37	14	23	25	1.92
35946860--35947027	46	3.6	45	72	6	129	25	26	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35946857--35947030	94	1.9	92	81	4	215	24	27	17	30	1.97
35952773--35952843	31	2.3	31	97	2	135	29	26	14	29	1.95
35953063--35953132	25	2.8	25	88	0	104	25	22	24	27	2.00
35954050--35954102	27	2.0	27	84	0	70	37	15	13	33	1.86
35954037--35954274	54	4.4	54	75	7	196	30	8	19	41	1.82
35954060--35954286	27	8.3	27	77	9	156	31	8	18	40	1.82
35954267--35954420	81	1.9	81	83	0	200	37	7	22	33	1.83
35954267--35954396	27	4.8	27	85	0	161	38	7	22	31	1.82
35954261--35954434	81	2.1	81	76	0	186	36	7	20	35	1.81
35956674--35956756	31	2.7	31	94	3	143	28	26	15	28	1.96
35956976--35957045	25	2.8	25	91	0	104	25	22	24	27	2.00
35957854--35957931	27	2.9	27	77	11	79	20	17	21	39	1.92
35957949--35958192	27	9.0	27	75	5	159	31	8	19	39	1.82
35958036--35958185	81	1.9	81	84	2	203	28	7	21	42	1.79
35958034--35958348	27	11.7	27	80	2	139	33	7	21	37	1.81
35958153--35958309	81	1.9	81	80	0	179	38	7	21	32	1.80
35958179--35958309	54	2.4	54	89	0	199	40	6	22	30	1.80
35958174--35958347	81	2.1	81	75	0	177	37	6	20	35	1.79
35960570--35960652	31	2.7	31	94	3	143	28	26	15	28	1.96
35960872--35960941	25	2.8	25	88	0	95	25	21	24	28	1.99
35961076--35961125	25	2.0	25	84	4	64	30	28	16	26	1.96
35961846--35962089	27	9.0	27	76	5	159	31	7	19	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35961933--35962082	81	1.9	81	85	0	210	28	6	21	43	1.78
35961931--35962251	27	11.9	27	79	2	142	33	7	21	37	1.81
35962076--35962206	54	2.4	54	90	0	199	39	7	22	29	1.82
35962050--35962206	81	1.9	81	80	0	179	38	7	22	31	1.82
35964796--35964994	40	4.9	40	93	0	335	20	21	28	29	1.98
35966544--35966695	27	5.6	27	93	3	241	30	28	13	26	1.94
35966544--35966695	55	2.8	55	94	0	259	30	28	13	26	1.94
35974548--35974672	27	4.6	27	93	3	196	31	29	13	25	1.94
35974548--35974672	55	2.3	55	94	0	214	31	29	13	25	1.94
35984177--35984434	40	6.5	40	90	1	385	22	23	27	26	1.99
35987292--35987369	31	2.5	31	95	2	140	25	26	17	29	1.98
35987562--35987633	25	3.0	23	82	10	72	27	22	20	29	1.99
35987589--35987658	25	2.8	25	84	4	88	27	22	22	27	1.99
35988543--35988787	27	9.0	27	78	7	181	31	8	20	40	1.82
35988542--35988780	81	2.9	80	74	6	212	30	8	20	40	1.82
35988543--35988795	54	4.6	54	76	5	240	30	8	20	39	1.82
35988737--35988950	81	2.6	82	73	3	218	35	8	21	34	1.84
35988774--35988899	27	4.7	27	88	2	182	38	9	23	28	1.86
35989991--35990054	30	2.1	31	94	2	112	53	4	3	39	1.38
35992494--35992754	40	6.6	40	85	3	341	26	26	21	26	1.99
35995037--35995065	13	2.1	14	93	6	51	55	10	0	34	1.34
36000143--36000282	9	15.6	9	69	15	76	36	1	19	42	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36000166--36000264	36	2.7	35	92	3	153	37	2	18	42	1.62
36000166--36000282	36	3.2	36	86	8	125	36	1	17	43	1.60
36002362--36002386	12	2.1	12	100	0	50	56	16	8	20	1.65
36002545--36002668	62	2.0	62	96	0	230	39	21	12	25	1.89
36003364--36003544	70	2.6	70	98	0	344	46	13	8	32	1.72
36005272--36005378	29	3.7	29	78	8	112	28	14	31	25	1.94
36006652--36006764	27	4.1	28	80	8	117	38	21	23	17	1.94
36006652--36006764	55	2.1	54	81	8	131	38	21	23	17	1.94
36014398--36014490	27	3.5	26	84	7	114	39	21	23	15	1.91
36015886--36015932	24	2.0	24	91	0	76	23	38	2	36	1.67
36017570--36017609	17	2.4	17	86	0	53	12	5	5	77	1.09
36017599--36017640	20	2.2	20	91	4	68	21	4	7	66	1.35
36017922--36017964	7	6.0	7	89	5	50	34	41	0	23	1.55
36017922--36017963	14	2.9	15	85	3	59	35	40	0	23	1.55
36017987--36018030	7	6.1	7	81	5	52	20	50	11	18	1.77
36018047--36018084	15	2.6	15	91	4	60	42	34	0	23	1.55
36018055--36018134	22	3.7	22	75	11	67	43	31	1	23	1.62
36018094--36018134	21	1.9	22	85	5	57	41	36	0	21	1.54
36018246--36018392	7	20.7	7	80	5	98	38	40	1	19	1.60
36018247--36018328	43	1.9	43	87	0	119	40	41	0	18	1.50
36018347--36018450	21	4.9	21	71	11	68	44	28	2	24	1.68
36017863--36018537	303	2.2	313	89	6	1016	42	25	2	28	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36021148--36021558	207	2.0	207	96	0	750	41	15	5	37	1.70
36022916--36023023	40	2.7	40	91	1	171	26	21	20	31	1.98
36024134--36024215	17	5.1	17	72	14	75	31	2	6	59	1.35
36027667--36027748	30	2.7	30	84	0	110	41	24	18	15	1.89
36045883--36045955	36	2.0	36	94	0	128	32	8	24	34	1.85
36058522--36058630	37	2.9	37	91	0	173	27	31	19	22	1.97
36058776--36058912	50	2.8	49	85	6	197	31	24	7	36	1.83
36058776--36059011	47	4.9	50	81	11	201	28	26	9	35	1.88
36058926--36059001	23	3.2	25	67	24	72	23	34	11	30	1.91
36058882--36059075	47	4.1	47	89	2	282	26	29	10	33	1.89
36058939--36059011	23	3.1	23	66	24	62	26	30	10	32	1.90
36058835--36059075	94	2.5	93	86	5	299	27	29	9	33	1.89
36064325--36064446	44	2.8	43	73	7	129	24	15	27	32	1.95
36066765--36066911	27	5.4	27	78	4	145	39	21	17	21	1.92
36066904--36066977	27	2.7	27	89	0	121	24	17	20	37	1.93
36067417--36067501	34	2.5	35	86	5	120	28	21	23	27	1.99
36084884--36084915	16	2.0	16	93	0	55	40	0	15	43	1.47
36096902--36097030	46	2.8	46	92	0	195	30	27	20	20	1.98
36099394--36099473	30	2.7	30	82	7	99	56	15	17	11	1.67
36099394--36099464	15	4.7	15	81	6	90	57	12	18	11	1.64
36099396--36099473	15	5.2	15	78	9	79	56	15	16	11	1.67
36102379--36102507	46	2.8	46	96	0	231	29	28	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36102384--36102526	46	3.1	46	76	11	132	29	28	21	20	1.98
36108578--36108610	17	1.9	17	100	0	66	30	12	0	57	1.35
36113729--36113819	29	3.2	29	85	1	130	25	14	30	29	1.95
36113721--36113829	57	1.9	58	88	5	168	26	15	29	28	1.96
36118013--36118058	16	2.9	16	90	3	67	47	23	21	6	1.74
36118287--36118388	29	3.6	29	86	1	143	24	15	31	28	1.96
36118287--36118397	57	1.9	57	92	1	186	26	15	30	27	1.96
36118274--36118388	29	4.0	29	83	6	137	26	14	29	28	1.95
36124000--36124035	19	1.9	19	88	5	56	44	11	0	44	1.39
36130049--36130264	47	4.6	47	79	6	208	27	18	29	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253