genome.fa.s4.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  166  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53898891--53899041	68	2.3	64	79	7	151	29	15	27	27	1.96
53899040--53899224	50	3.7	49	82	4	194	27	18	24	29	1.98
53907978--53908117	48	2.9	48	84	2	156	24	15	29	30	1.96
53908043--53908170	48	2.7	48	79	2	123	26	19	28	25	1.99
53921560--53921737	27	6.6	27	74	6	119	28	16	26	29	1.97
53921557--53921737	82	2.2	81	81	4	204	28	16	25	29	1.97
53923544--53923650	23	5.2	23	58	25	58	22	23	29	24	1.99
53923531--53923788	40	6.7	40	91	4	379	22	21	29	26	1.99
53927195--53927620	47	8.9	47	93	1	663	32	7	29	29	1.86
53927739--53927817	37	2.1	37	90	0	122	24	18	31	25	1.98
53936594--53936618	13	1.9	13	100	0	50	44	0	8	48	1.32
53941843--53941941	6	17.0	6	74	15	75	18	3	2	76	1.01
53954446--53954636	48	4.0	48	74	4	179	27	17	28	26	1.98
53954447--53954634	96	2.0	96	85	4	254	26	18	29	26	1.98
53956652--53956744	23	4.1	23	74	13	75	22	22	19	35	1.96
53956932--53956977	20	2.3	20	88	0	65	32	2	26	39	1.68
53956963--53957050	20	4.5	19	79	2	77	38	11	15	34	1.84
53958413--53958669	55	4.8	53	76	12	188	35	17	24	22	1.95
53969191--53969327	46	3.0	46	86	0	193	25	30	8	35	1.86
53969301--53969730	47	9.1	47	88	2	599	26	29	11	33	1.91
53973798--53973941	39	3.7	39	86	0	189	31	26	22	20	1.98
53973798--53973941	78	1.8	78	90	0	234	31	26	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53975912--53976001	45	2.0	44	84	2	117	24	13	25	36	1.92
53987160--53987208	24	2.0	24	100	0	98	28	30	8	32	1.86
53993750--53993865	29	4.1	29	81	4	121	25	32	16	25	1.96
53997411--53999025	806	2.0	806	99	0	3212	33	23	14	27	1.94
54001391--54001441	16	3.2	16	83	8	59	56	21	3	17	1.57
54004336--54004394	30	2.0	30	86	6	84	18	28	33	18	1.95
54007765--54007850	43	2.0	44	82	15	108	66	2	11	19	1.34
54016469--54016574	55	1.9	55	86	3	151	18	26	28	26	1.98
54018636--54018689	25	2.2	25	80	12	58	38	3	1	55	1.28
54023420--54023465	24	2.0	23	86	4	65	23	4	41	30	1.74
54025894--54025949	28	2.0	28	100	0	112	28	17	10	42	1.83
54026162--54026210	3	16.3	3	91	0	80	69	0	28	2	1.00
54031268--54031349	43	1.9	43	89	0	128	28	32	25	13	1.93
54031342--54031770	38	11.3	38	90	1	662	30	26	22	20	1.98
54031342--54031770	151	2.8	152	92	1	682	30	26	22	20	1.98
54033893--54034076	40	4.6	40	84	2	237	23	21	28	26	1.99
54037304--54037483	40	4.6	39	80	10	188	24	28	22	25	1.99
54037306--54037483	78	2.3	79	81	8	193	24	28	22	25	2.00
54044534--54044718	40	4.7	40	82	6	216	24	27	22	24	2.00
54044534--54044718	79	2.3	81	80	8	209	24	27	22	24	2.00
54056135--54056319	40	4.6	40	78	3	210	24	23	26	24	2.00
54068727--54068911	40	4.6	40	82	3	228	25	23	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54078439--54078610	93	1.8	93	93	2	301	28	29	20	21	1.98
54078432--54078607	46	3.8	46	77	14	200	29	28	20	21	1.98
54080686--54080710	10	2.5	10	100	0	50	20	0	0	80	0.72
54087590--54087665	26	2.9	26	76	7	91	42	22	17	18	1.89
54089112--54089154	16	2.6	17	86	13	63	69	9	16	4	1.31
54089110--54089155	17	2.9	15	82	17	58	65	13	15	6	1.46
54095152--54095231	26	3.1	26	80	7	90	40	21	18	20	1.92
54095194--54095255	27	2.3	26	83	2	79	37	22	20	19	1.95
54095618--54095926	155	2.0	155	90	0	483	25	30	19	24	1.98
54096960--54097010	24	2.1	24	82	7	59	19	39	3	37	1.70
54101384--54101412	14	2.1	14	100	0	58	51	13	0	34	1.42
54103243--54103272	14	2.1	14	100	0	60	33	33	6	26	1.83
54109487--54109671	79	2.3	81	84	7	236	24	22	27	25	2.00
54109488--54109671	40	4.6	40	83	9	216	24	22	27	25	2.00
54109540--54109704	79	2.1	79	84	6	210	26	21	27	25	1.99
54117392--54117576	79	2.3	81	84	7	236	24	22	27	25	2.00
54117393--54117576	40	4.6	40	83	9	216	24	22	27	25	2.00
54117445--54117609	79	2.1	79	84	6	210	26	21	27	25	1.99
54129304--54129477	46	3.8	46	78	15	207	20	20	29	29	1.98
54132393--54132471	15	5.4	15	77	10	83	10	17	13	58	1.63
54132384--54132470	29	3.0	29	81	8	95	10	17	16	56	1.67
54134851--54135026	46	3.8	46	72	14	155	22	19	28	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54141634--54142068	50	8.6	50	77	3	381	28	18	23	29	1.98
54141638--54142069	151	2.9	151	87	1	625	27	18	24	29	1.98
54141836--54142017	101	1.8	101	87	2	276	29	20	22	27	1.99
54142278--54142307	16	1.9	15	93	6	51	43	0	23	33	1.54
54143182--54143218	16	2.3	16	100	0	74	21	13	21	43	1.87
54148654--54149086	50	8.6	50	76	7	376	26	17	24	30	1.97
54148654--54149100	101	4.4	98	75	9	391	26	17	24	30	1.97
54148654--54149094	151	2.9	151	88	3	636	26	17	24	31	1.97
54153476--54153594	28	4.2	28	89	3	159	27	14	31	26	1.95
54153476--54153577	28	3.7	28	92	2	161	24	14	32	28	1.95
54154805--54154838	18	1.9	18	88	5	52	41	11	17	29	1.85
54155673--54155776	54	1.9	54	82	0	127	17	25	27	28	1.97
54157064--54157231	91	1.8	92	93	3	295	21	20	29	27	1.98
54157067--54157236	45	3.7	46	77	16	201	21	20	28	28	1.98
54164633--54164801	46	3.7	46	74	17	179	21	21	28	27	1.99
54164630--54164799	92	1.8	93	92	1	288	21	21	28	27	1.99
54170915--54171106	81	2.4	81	84	0	233	32	23	18	26	1.97
54170918--54171102	40	4.6	40	83	1	208	32	23	18	25	1.97
54174528--54174725	99	2.0	99	91	0	324	26	10	21	41	1.85
54175591--54175634	21	2.2	20	88	12	63	70	2	0	27	0.99
54175609--54175646	13	3.0	13	80	3	51	68	0	0	31	0.90
54175865--54175901	19	1.9	19	88	0	56	32	0	35	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54182488--54182691	40	5.1	40	90	1	311	26	28	22	22	1.99
54188557--54188700	37	3.9	37	96	0	245	25	31	18	24	1.98
54188845--54188935	46	2.0	46	86	0	128	28	31	6	32	1.83
54188909--54189746	47	17.1	47	82	7	848	26	29	12	31	1.93
54188952--54189026	22	3.3	22	65	17	62	24	30	13	32	1.93
54188909--54189746	98	8.5	94	87	6	1010	26	29	12	31	1.93
54188909--54189724	249	3.3	249	90	4	1243	26	29	12	31	1.93
54193364--54193750	40	9.8	40	94	1	658	25	27	21	24	1.99
54193364--54193750	158	2.4	158	94	1	661	25	27	21	24	1.99
54195019--54195163	37	3.9	37	95	0	254	25	31	18	24	1.98
54195308--54195398	46	2.0	46	84	0	119	28	30	7	32	1.85
54195372--54196011	47	13.1	47	83	6	659	26	28	12	31	1.93
54195415--54195489	22	3.3	22	65	17	62	24	30	13	32	1.93
54195372--54195989	51	12.6	50	87	5	797	26	28	12	31	1.93
54195372--54195989	149	4.2	148	88	5	878	26	28	12	31	1.93
54200779--54200830	25	2.1	25	82	13	63	32	25	11	30	1.91
54203150--54203216	35	1.9	35	87	3	100	34	10	11	43	1.76
54203206--54203285	33	2.5	32	82	8	99	26	8	18	46	1.78
54204560--54204629	27	2.6	27	80	8	79	51	20	2	25	1.61
54207599--54207635	14	2.6	14	95	0	65	45	29	0	24	1.53
54207892--54208043	41	3.7	40	84	6	182	31	23	22	23	1.98
54208083--54208218	40	3.4	41	83	4	170	19	21	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54208107--54208216	40	2.8	40	91	4	179	17	23	24	34	1.96
54208298--54208322	8	3.1	8	100	0	50	60	24	16	0	1.36
54209123--54209195	24	3.0	24	89	0	119	36	4	46	12	1.61
54214501--54214677	35	5.0	35	77	4	160	28	11	18	41	1.85
54217663--54217716	25	2.2	25	100	0	108	38	11	24	25	1.88
54219598--54219731	46	2.9	46	77	5	162	20	20	30	28	1.98
54222649--54222727	15	5.4	15	77	10	83	10	17	13	58	1.63
54222640--54222726	29	3.0	29	81	8	95	10	17	16	56	1.67
54226309--54226452	46	3.1	44	71	21	116	29	28	20	22	1.98
54228650--54228728	40	2.0	40	89	0	122	29	30	20	20	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253