genome.fa.s4.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  209  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68912176--68912228	26	2.0	26	92	0	88	30	37	13	18	1.89
68912143--68912273	69	1.9	69	91	0	217	28	32	16	22	1.96
68912202--68912318	43	2.7	43	82	0	144	29	29	16	24	1.96
68913799--68914050	138	1.8	138	95	1	461	50	13	9	27	1.71
68915816--68915855	19	2.1	19	100	0	80	5	15	25	55	1.60
68915946--68915979	18	1.9	18	88	5	52	44	2	2	50	1.32
68916177--68916201	13	1.9	13	100	0	50	48	36	0	16	1.46
68916177--68916227	20	2.5	20	77	0	57	47	29	0	23	1.52
68916395--68916433	14	2.8	14	92	0	60	56	30	0	12	1.37
68917009--68917101	41	2.3	39	80	8	114	17	20	24	37	1.93
68917023--68917100	41	1.9	41	89	0	120	19	20	24	35	1.95
68919281--68919322	16	2.3	19	84	15	54	61	0	0	38	0.96
68923804--68923903	39	2.6	39	88	0	119	24	22	24	30	1.99
68923817--68923903	39	2.2	39	93	0	147	22	24	25	27	2.00
68923829--68923916	39	2.3	39	81	0	104	23	19	27	29	1.98
68933011--68933107	39	2.5	39	80	5	99	26	27	24	20	1.99
68933088--68933164	39	2.0	39	89	0	118	25	29	20	23	1.99
68935288--68935357	37	1.9	36	94	2	122	31	20	22	25	1.98
68940263--68940388	39	3.2	39	88	0	180	26	28	21	23	1.99
68944953--68945039	39	2.2	39	89	0	129	21	20	26	31	1.98
68948348--68948460	43	2.6	43	78	0	118	23	15	27	33	1.95
68948301--68948460	86	1.9	86	82	5	207	22	15	28	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68950368--68950658	47	6.3	45	78	14	260	29	18	28	23	1.97
68953194--68953227	10	3.2	10	84	15	50	55	2	0	41	1.15
68953249--68953297	18	2.5	19	83	16	64	40	4	2	53	1.32
68958245--68958282	20	2.1	18	85	14	51	21	28	10	39	1.86
68965000--68965079	41	2.0	40	85	9	108	22	22	41	13	1.89
68965199--68965239	22	1.9	21	85	5	55	12	41	21	24	1.87
68971116--68971171	13	4.1	13	75	20	60	28	23	28	19	1.98
68973225--68973397	43	4.0	44	78	10	178	31	27	17	24	1.97
68973225--68973389	86	1.9	85	82	6	208	30	27	17	24	1.97
68975765--68975811	24	2.0	23	95	4	85	59	0	0	40	0.97
68980870--68980900	15	2.1	15	93	0	53	19	0	25	54	1.44
68981424--68981681	45	5.9	44	76	8	181	22	15	28	32	1.95
68985354--68985402	20	2.4	20	79	3	62	40	2	4	53	1.32
68985625--68985661	17	2.2	16	90	4	56	72	0	27	0	0.84
68987042--68987092	18	2.8	18	85	5	68	33	13	17	35	1.89
68987042--68987141	18	5.6	17	69	15	51	36	16	16	32	1.90
68987042--68987153	36	3.1	35	75	5	107	34	15	16	33	1.90
68991464--68991647	79	2.3	81	83	8	227	25	27	22	24	2.00
68991445--68991647	39	5.1	40	81	9	229	24	27	22	25	2.00
68999878--68999908	15	2.1	15	93	0	53	19	0	25	54	1.44
69000481--69000595	45	2.6	45	90	2	178	21	15	29	33	1.95
69000476--69000611	45	3.0	45	82	4	168	23	15	29	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69014913--69014960	22	2.2	22	88	0	69	45	6	18	29	1.74
69016298--69016350	21	2.5	21	84	0	61	45	20	3	30	1.69
69016446--69016477	15	2.1	16	88	11	50	59	9	0	31	1.29
69017000--69017545	187	2.9	187	87	4	780	34	18	15	31	1.92
69020127--69020169	21	2.0	21	82	8	52	27	0	13	58	1.37
69021257--69021282	8	3.2	8	100	0	52	26	11	0	61	1.30
69021273--69021406	64	2.1	64	94	0	232	37	13	3	45	1.61
69021286--69021425	64	2.2	64	85	5	185	40	10	3	45	1.56
69021454--69021524	24	3.0	24	87	0	106	29	16	7	46	1.74
69021851--69022138	9	32.4	9	82	4	316	47	13	2	37	1.54
69022125--69022246	34	3.4	34	72	20	122	43	14	3	38	1.62
69022118--69022267	74	2.0	74	97	0	282	43	16	3	37	1.64
69027400--69027428	14	2.1	14	93	6	51	34	0	6	58	1.25
69027843--69027897	21	2.6	21	97	0	101	30	18	50	0	1.47
69028145--69028211	31	2.2	31	86	0	89	16	4	19	59	1.53
69028278--69028321	22	2.0	22	86	8	63	47	15	22	13	1.81
69028327--69028420	43	2.2	43	88	3	136	24	29	19	26	1.98
69030303--69030358	26	2.2	26	100	0	112	37	17	14	30	1.90
69032728--69032766	18	2.2	18	90	0	60	61	12	5	20	1.50
69037743--69037926	40	4.6	40	83	6	230	25	23	26	25	2.00
69037743--69037926	80	2.3	80	87	3	255	25	23	26	25	2.00
69040352--69040400	21	2.3	21	100	0	98	20	26	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69040404--69040445	21	2.0	21	95	0	75	21	33	14	30	1.93
69042286--69042393	54	2.0	55	98	1	209	46	10	17	25	1.80
69052652--69052684	13	2.3	15	90	10	52	81	0	0	18	0.68
69052994--69053034	13	3.4	13	74	19	52	36	2	0	60	1.10
69052968--69053034	23	3.0	23	88	2	91	37	2	0	59	1.13
69055567--69055684	43	2.8	42	83	7	141	22	16	27	33	1.95
69059840--69059882	9	4.7	9	80	5	50	18	0	34	46	1.50
69060027--69060060	13	2.6	13	95	0	59	14	0	47	38	1.45
69060678--69060734	30	1.9	30	88	0	87	33	8	24	33	1.86
69061071--69061239	48	3.6	48	78	9	202	28	17	28	24	1.98
69061666--69061691	12	2.2	12	100	0	52	7	15	30	46	1.74
69061746--69062005	41	6.4	41	92	0	380	33	22	24	20	1.97
69062046--69062093	23	2.1	23	85	11	64	50	22	0	27	1.50
69062094--69062123	14	2.2	13	94	5	51	46	33	0	20	1.51
69062167--69062814	280	2.3	281	79	10	662	34	2	18	44	1.64
69063016--69063055	19	2.1	19	90	0	62	77	2	2	17	0.99
69067868--69068010	43	3.3	43	83	5	191	22	16	30	30	1.96
69069995--69070032	20	1.9	20	88	0	58	28	23	18	28	1.98
69072154--69072201	21	2.3	20	82	10	53	72	10	0	16	1.10
69072159--69072201	21	2.0	21	86	4	59	72	9	0	18	1.11
69078759--69078963	27	7.6	27	83	3	223	26	15	29	29	1.96
69078760--69078963	54	3.8	54	84	3	257	25	15	29	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69086904--69087108	27	7.6	27	83	3	223	26	15	29	29	1.96
69086905--69087108	54	3.8	54	84	3	257	25	15	29	29	1.96
69100335--69100777	40	10.9	40	79	4	401	35	22	15	25	1.94
69100345--69100777	81	5.3	80	79	7	439	34	23	16	25	1.95
69100335--69100787	121	3.7	119	80	7	452	36	22	15	25	1.94
69100335--69100777	41	10.9	40	78	7	412	35	22	15	25	1.94
69101072--69101112	21	2.0	21	85	0	55	48	21	0	29	1.50
69104700--69104728	13	2.1	14	93	6	51	37	0	6	55	1.27
69105153--69105201	21	2.3	21	82	0	62	30	16	46	6	1.71
69105424--69105499	31	2.4	32	84	4	91	13	6	21	59	1.56
69106280--69106310	16	1.9	16	93	0	53	41	3	0	54	1.16
69111727--69111834	43	2.5	43	81	11	125	24	17	24	34	1.96
69112026--69112122	47	2.1	47	100	0	194	39	4	18	38	1.70
69121627--69121671	21	2.2	20	84	4	54	64	17	15	2	1.39
69126390--69126428	6	6.3	6	93	3	60	15	2	0	82	0.79
69126390--69126448	18	3.2	19	80	9	68	16	5	0	77	0.93
69139868--69139947	40	2.0	40	97	0	151	33	16	7	42	1.76
69149090--69149161	28	2.6	28	95	0	126	29	31	11	27	1.91
69149193--69149279	40	2.2	40	83	4	104	33	26	19	20	1.97
69161180--69161243	5	12.2	5	75	15	58	73	1	3	21	1.06
69161180--69161238	14	3.9	15	82	14	59	72	1	3	22	1.08
69163863--69164012	43	3.5	41	73	13	135	32	24	15	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69166174--69166229	28	2.0	29	86	13	82	62	7	16	14	1.52
69168467--69168542	33	2.3	33	95	2	134	46	10	0	43	1.38
69181864--69181900	10	3.7	10	92	7	58	37	10	18	32	1.86
69181870--69181920	21	2.4	21	86	0	66	35	11	21	31	1.90
69182206--69182285	31	2.6	30	86	5	108	28	18	23	28	1.98
69185680--69185711	16	2.0	16	93	0	55	9	25	0	65	1.22
69187301--69187396	27	3.5	27	91	1	147	23	22	23	29	1.99
69192299--69192382	27	3.2	26	72	5	78	19	19	22	39	1.93
69207767--69207804	3	12.7	3	100	0	76	31	0	0	68	0.90
69208757--69208782	7	3.7	7	100	0	52	0	11	0	88	0.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253