genome.fa.s4.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  118  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37174706--37174730	11	2.3	11	100	0	50	24	0	20	56	1.43
37176056--37176209	28	5.5	28	96	0	265	33	28	12	25	1.92
37182904--37182928	11	2.3	11	100	0	50	24	0	20	56	1.43
37184254--37184435	28	6.5	28	96	0	321	34	28	10	26	1.90
37184910--37184935	12	2.2	12	100	0	52	42	0	7	50	1.31
37187078--37187117	21	1.9	21	94	0	71	55	10	5	30	1.54
37187242--37187286	22	2.0	22	100	0	90	60	0	4	35	1.17
37189796--37189854	25	2.2	27	85	11	86	20	16	0	62	1.32
37189797--37189846	25	2.0	25	96	0	91	22	12	0	66	1.24
37191284--37191370	42	2.1	42	95	0	156	33	27	13	25	1.94
37194142--37194189	22	2.2	22	88	3	71	52	10	6	31	1.60
37203370--37203431	23	2.6	24	76	5	63	46	22	14	16	1.83
37208398--37208436	19	2.1	19	100	0	78	33	25	15	25	1.95
37209898--37209952	24	2.3	23	78	12	58	50	25	5	18	1.67
37212186--37212219	16	2.1	17	89	10	54	61	0	14	23	1.33
37214429--37214509	42	1.9	42	87	0	117	19	24	27	28	1.99
37216341--37216514	48	3.6	48	87	1	251	24	17	30	27	1.97
37216331--37216544	96	2.2	96	78	9	247	26	18	28	26	1.98
37222493--37222520	13	2.2	13	100	0	56	21	7	25	46	1.76
37223950--37224054	27	3.8	27	79	10	106	36	20	24	19	1.95
37223943--37224054	55	2.1	54	81	8	129	36	20	24	18	1.95
37225472--37225518	24	2.0	24	91	0	76	23	38	2	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37228882--37228965	44	1.9	44	100	0	168	30	34	9	25	1.88
37231334--37231515	37	4.9	37	95	0	319	25	30	19	24	1.98
37231660--37231930	47	5.8	46	85	8	138	25	30	11	32	1.91
37231724--37232257	47	11.1	47	87	5	735	26	30	12	30	1.93
37231724--37232257	145	3.7	144	89	5	792	26	30	12	30	1.93
37236051--37236163	27	4.2	26	83	8	127	36	23	23	17	1.95
37236051--37236163	55	2.1	54	85	5	147	36	23	23	17	1.95
37240978--37241018	20	2.0	20	95	0	73	39	7	19	34	1.80
37255934--37255964	15	2.1	15	93	0	53	64	6	0	29	1.18
37261107--37261162	18	3.3	18	73	14	64	44	12	1	41	1.53
37261091--37261162	33	2.2	33	94	0	126	43	13	2	40	1.59
37261101--37261152	15	3.3	15	72	15	50	42	17	1	38	1.60
37262780--37262927	56	2.6	56	90	0	233	33	22	14	28	1.94
37264425--37264791	46	7.8	50	73	12	185	25	29	18	26	1.98
37264577--37264788	46	4.6	45	77	10	198	24	30	18	26	1.98
37273481--37273523	19	2.2	20	83	8	61	27	18	18	34	1.95
37273487--37273525	19	2.1	19	95	0	69	33	23	15	28	1.95
37281806--37281979	48	3.6	48	90	0	267	24	17	31	27	1.97
37281809--37282065	96	2.7	96	77	7	235	25	17	29	27	1.98
37285030--37285254	40	5.7	40	81	6	215	25	28	21	25	1.99
37285186--37285263	40	1.9	41	82	10	97	26	28	20	24	1.99
37292565--37292789	40	5.7	40	81	6	215	25	28	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37292721--37292798	40	1.9	41	82	10	97	26	28	20	24	1.99
37297261--37297288	11	2.5	11	100	0	56	60	0	0	39	0.97
37299426--37299658	49	4.7	49	84	2	286	25	17	27	30	1.97
37299424--37299658	99	2.4	100	86	2	339	25	17	27	29	1.97
37301604--37301631	13	2.2	13	100	0	56	21	7	25	46	1.76
37305440--37305477	19	2.0	19	89	0	58	44	15	5	34	1.69
37308374--37308470	30	3.2	31	75	5	92	30	26	12	29	1.93
37310147--37310195	12	3.6	13	89	10	64	75	6	4	14	1.14
37310170--37310211	19	2.3	18	84	11	59	76	4	7	11	1.15
37311096--37311152	11	5.5	10	73	22	55	77	1	17	3	1.00
37311085--37311152	21	3.2	20	80	12	66	76	2	17	2	1.04
37311096--37311152	5	11.0	5	77	17	55	77	1	17	3	1.00
37311096--37311152	16	3.7	14	80	17	60	77	1	17	3	1.00
37311221--37311245	12	2.1	12	100	0	50	76	0	16	8	1.02
37311221--37311302	30	2.7	31	81	5	105	64	1	21	12	1.33
37313412--37313508	30	3.2	30	76	2	97	29	26	13	29	1.94
37316408--37316464	24	2.5	23	75	13	55	36	1	21	40	1.63
37316733--37316878	61	2.4	61	87	0	220	32	13	21	32	1.93
37317086--37317131	14	3.1	15	81	9	58	50	4	15	30	1.63
37321978--37322112	69	2.0	69	90	0	216	38	20	21	19	1.94
37326044--37326102	29	2.0	29	86	0	82	16	11	33	37	1.86
37326193--37326244	24	2.2	24	89	0	77	40	5	5	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37326193--37326256	24	2.7	23	83	9	74	40	6	7	45	1.58
37327004--37327037	13	2.6	13	100	0	68	8	41	26	23	1.83
37333941--37334024	32	2.6	32	78	10	82	29	4	25	40	1.76
37334220--37334312	27	3.5	26	74	2	96	25	10	26	36	1.89
37334168--37334285	27	4.5	26	71	7	85	27	11	27	33	1.92
37334191--37334313	53	2.3	53	94	0	210	26	11	26	34	1.91
37343725--37343762	20	1.9	20	88	0	58	36	31	13	18	1.89
37347063--37347112	24	2.1	23	85	10	66	52	2	2	44	1.24
37350350--37350396	24	2.1	21	84	11	58	53	0	0	46	1.00
37350716--37350800	31	2.9	28	79	8	73	70	0	3	25	1.03
37350707--37350803	10	9.9	10	72	10	58	68	0	4	27	1.08
37351172--37351324	76	2.0	76	92	2	254	30	21	11	36	1.88
37352021--37352049	8	3.8	8	95	4	51	37	20	0	41	1.53
37352283--37352330	20	2.4	21	79	6	55	50	2	20	27	1.60
37353135--37353165	7	4.3	7	95	4	53	48	0	25	25	1.52
37354184--37354266	42	2.0	42	87	0	121	30	19	28	21	1.98
37355514--37355639	45	2.8	45	83	4	139	21	23	12	42	1.87
37360014--37360334	46	7.0	46	90	0	464	38	13	24	23	1.91
37361741--37361963	40	5.6	40	92	0	365	22	28	21	27	1.99
37370146--37370366	40	5.6	40	90	2	347	23	28	20	27	1.99
37370142--37370366	79	2.8	80	90	2	355	23	28	20	27	1.99
37372677--37372725	24	2.0	24	96	0	89	28	6	20	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37375563--37375634	33	2.2	33	82	2	81	30	26	20	22	1.98
37375662--37375744	31	2.7	31	94	3	143	27	25	16	30	1.97
37375964--37376033	25	2.8	25	93	0	113	24	22	25	27	2.00
37376843--37376920	27	2.9	27	79	11	88	20	20	21	37	1.95
37376960--37377045	27	3.1	27	76	17	95	34	9	16	39	1.80
37377023--37377179	27	5.8	27	77	6	140	29	8	19	42	1.82
37377178--37377242	27	2.4	27	86	0	85	43	9	21	26	1.82
37382024--37382113	44	2.0	44	97	0	171	45	24	4	25	1.72
37383828--37383896	28	2.5	28	83	9	88	31	24	14	28	1.95
37392498--37392540	22	2.0	22	95	0	77	39	11	18	30	1.86
37398339--37398510	67	2.6	66	81	7	170	31	16	29	22	1.96
37398363--37398546	67	2.8	64	78	8	203	28	16	30	23	1.96
37402788--37402834	24	1.9	25	86	4	69	21	27	10	40	1.86
37404666--37404850	79	2.3	81	84	7	236	24	22	27	25	2.00
37404667--37404850	40	4.6	40	83	9	216	24	22	27	25	2.00
37404719--37404883	79	2.1	79	84	6	210	26	21	27	25	1.99
37412620--37412802	77	2.3	80	83	9	225	24	22	27	25	2.00
37412620--37412802	40	4.7	40	84	9	225	24	22	27	25	2.00
37412673--37412835	79	2.1	76	83	8	195	25	21	27	25	1.99
37417516--37417575	27	2.2	27	87	0	84	45	18	8	28	1.78
37420771--37420810	19	2.1	19	85	0	53	42	12	7	37	1.71
37421773--37421813	22	1.9	21	85	5	55	63	4	19	12	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37422445--37422518	18	4.2	18	67	10	53	8	16	0	75	1.02
37424616--37424769	27	5.7	27	83	7	188	29	10	20	39	1.86
37424614--37424769	53	2.9	54	84	5	217	29	10	20	39	1.87
37436468--37436499	16	2.0	16	93	0	55	56	15	0	28	1.40
37454822--37455102	50	5.7	50	81	9	337	24	29	18	27	1.98
37454822--37455091	144	1.9	145	88	3	411	24	29	19	27	1.98
37456704--37456732	14	2.1	14	100	0	58	37	0	6	55	1.27
37456703--37456749	18	2.9	16	84	15	62	34	0	8	57	1.29
37458062--37458106	14	2.7	18	77	16	53	2	20	4	73	1.11
37460551--37460667	43	2.8	42	81	10	148	28	26	15	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253