genome.fa.s4.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A04
Parameters: 2 7 7 80 10 50 1000
Length:  81554553

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   

This is table  159  of  253  ( 30316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51361406--51361573	27	6.2	27	91	0	255	36	4	24	34	1.75
51361587--51361736	27	5.6	27	82	0	174	29	8	22	40	1.82
51361568--51361736	54	3.1	52	75	9	151	29	8	21	40	1.83
51366820--51366860	21	2.0	21	90	9	66	43	24	0	31	1.54
51369962--51370048	45	1.9	45	90	0	138	34	26	14	24	1.94
51371886--51372109	40	5.6	40	83	8	269	25	27	22	25	2.00
51371888--51372110	119	1.9	120	83	6	292	25	27	22	25	2.00
51381936--51381969	18	1.9	18	88	5	52	29	17	11	41	1.85
51383183--51383275	29	3.3	28	79	7	91	29	33	11	25	1.91
51383183--51383275	27	3.3	29	80	4	93	29	33	11	25	1.91
51386918--51386979	26	2.3	27	78	10	74	33	27	8	30	1.86
51387085--51387163	27	2.9	27	84	1	104	20	26	17	35	1.95
51390675--51390759	27	3.1	28	86	3	120	20	25	18	35	1.95
51391699--51392243	272	2.0	272	100	0	1090	21	32	16	29	1.95
51395870--51396074	40	5.2	40	88	2	281	26	27	21	23	1.99
51401958--51402019	29	2.1	29	84	0	79	24	25	25	24	2.00
51403234--51403344	43	2.6	42	73	12	109	32	23	19	24	1.98
51406618--51406728	28	4.0	28	83	5	127	27	29	14	27	1.95
51406623--51406730	56	1.9	56	85	7	148	26	30	14	27	1.95
51406944--51406997	16	3.4	16	85	10	74	11	24	20	44	1.83
51406944--51406996	24	2.2	24	86	0	70	11	24	18	45	1.82
51410553--51410776	40	5.7	40	85	6	287	24	22	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51410553--51410776	79	2.8	80	84	6	287	24	22	28	25	1.99
51410553--51410809	79	3.3	79	82	8	222	25	21	28	24	1.99
51418518--51418741	40	5.7	39	85	7	283	24	22	28	25	1.99
51418518--51418774	79	3.3	79	83	7	229	25	21	28	24	1.99
51423475--51423612	46	3.0	46	86	1	186	25	29	9	35	1.87
51423585--51424062	47	10.1	47	92	2	668	25	30	12	31	1.92
51428367--51428543	27	6.6	27	84	5	205	26	14	28	30	1.95
51428367--51428543	53	3.3	54	84	4	214	26	14	28	30	1.95
51432975--51433099	42	2.9	43	83	10	150	31	24	18	25	1.98
51434406--51434496	45	2.0	45	91	0	146	39	24	10	25	1.88
51435948--51436007	30	2.0	30	93	0	102	30	3	20	46	1.66
51436126--51436185	30	2.0	30	100	0	120	23	16	13	46	1.82
51439174--51439469	40	7.4	40	88	2	384	26	28	22	22	1.99
51440256--51440304	21	2.3	21	100	0	98	24	34	0	40	1.55
51442948--51443045	48	2.0	48	98	0	187	35	15	14	34	1.88
51446597--51446924	164	2.0	164	99	0	647	29	16	25	28	1.96
51449498--51449692	49	3.9	49	84	5	257	29	26	18	26	1.98
51449504--51449690	100	1.9	100	94	0	329	29	25	18	25	1.98
51451184--51451372	39	5.1	39	80	12	227	22	29	24	24	1.99
51451257--51451314	29	2.0	29	93	0	98	18	29	22	29	1.98
51451218--51451353	68	2.0	68	94	0	236	20	29	24	25	1.99
51456353--51456512	39	4.1	39	95	3	268	22	29	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51457997--51458035	14	2.6	16	88	8	55	35	20	2	41	1.66
51462584--51462682	49	2.0	49	98	0	189	32	12	13	42	1.81
51468559--51468591	11	2.9	12	86	13	52	66	0	0	33	0.92
51489686--51489739	6	9.0	6	87	0	63	14	7	1	75	1.09
51489686--51489739	18	3.0	18	83	0	72	14	7	1	75	1.09
51489771--51489802	16	2.0	16	100	0	64	50	31	6	12	1.65
51490879--51490928	16	3.2	16	75	13	50	48	18	22	12	1.80
51491150--51491241	29	3.2	29	86	7	134	28	13	28	30	1.94
51495212--51495254	16	2.7	16	85	0	59	51	18	20	9	1.74
51495463--51495575	29	4.0	28	86	2	136	26	14	30	29	1.95
51495476--51495586	58	1.9	57	87	1	159	26	13	30	29	1.94
51496115--51496153	21	1.9	20	85	15	53	20	5	51	23	1.67
51498542--51498599	30	1.9	30	89	6	91	20	41	25	12	1.87
51501296--51501494	84	2.4	84	78	6	192	31	12	9	47	1.72
51504436--51504495	24	2.4	25	97	2	113	23	21	20	35	1.96
51516053--51516104	21	2.5	21	93	0	86	30	38	9	21	1.85
51517682--51517727	21	2.2	21	100	0	92	50	15	10	23	1.75
51532983--51533036	27	2.0	27	96	0	99	25	7	27	38	1.83
51545132--51545201	20	3.2	24	64	35	68	40	5	20	34	1.76
51545123--51545201	40	2.0	40	100	0	158	43	5	20	31	1.73
51548311--51548347	17	2.2	17	95	0	65	35	10	8	45	1.69
51549364--51549418	27	2.0	27	85	0	74	40	7	14	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51549666--51549904	51	4.7	51	85	4	281	25	17	24	32	1.97
51552971--51553175	27	7.6	27	85	4	252	26	15	28	29	1.96
51561011--51561217	27	7.6	27	83	6	238	26	14	28	29	1.96
51561011--51561196	82	2.3	81	85	5	239	26	15	27	30	1.96
51561011--51561217	82	2.5	79	82	6	234	26	14	28	29	1.96
51568062--51568179	43	2.8	42	79	7	139	30	16	23	28	1.97
51569859--51569900	20	2.1	20	100	0	84	45	0	26	28	1.54
51574227--51574265	21	1.9	20	84	5	51	35	0	17	46	1.49
51578373--51578397	13	1.9	13	100	0	50	32	28	40	0	1.57
51579478--51579516	20	2.0	20	89	0	60	33	0	20	46	1.51
51584484--51584577	47	2.0	47	97	0	179	37	14	26	21	1.92
51589653--51589828	46	3.8	46	79	14	209	20	20	29	29	1.98
51589650--51589821	93	1.8	93	95	2	310	20	20	29	28	1.98
51593977--51594154	90	2.0	90	85	6	245	29	25	18	26	1.98
51602917--51603015	48	2.1	48	98	0	189	25	20	24	30	1.99
51612813--51612990	27	6.6	27	83	3	205	26	15	28	29	1.96
51612814--51612969	82	1.9	81	88	3	233	26	15	28	29	1.96
51612810--51612990	82	2.2	81	83	2	229	27	15	27	29	1.96
51620447--51620587	25	5.6	26	70	16	91	24	14	29	31	1.95
51620523--51620604	25	3.2	25	75	14	87	21	12	31	34	1.91
51626513--51626684	93	1.8	93	93	2	301	28	29	20	21	1.98
51626506--51626681	46	3.8	46	78	14	200	29	29	19	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51627883--51627981	50	2.0	50	97	0	189	24	23	4	48	1.68
51628588--51628652	28	2.3	30	78	10	73	32	3	3	61	1.27
51629616--51629666	16	2.8	18	80	17	61	37	0	0	62	0.95
51636537--51636593	30	1.9	30	92	0	96	31	12	24	31	1.92
51636925--51637193	47	5.8	45	76	10	231	26	21	30	21	1.98
51636921--51637190	94	2.9	94	79	11	295	26	20	30	22	1.98
51645505--51645547	22	2.0	22	90	9	70	20	13	27	37	1.91
51653581--51653764	49	3.7	48	78	8	208	26	20	24	28	1.99
51653576--51653763	100	1.9	100	93	2	324	26	20	24	28	1.99
51682254--51682471	40	5.5	40	92	2	325	24	28	22	23	2.00
51685566--51685741	45	4.0	44	85	4	212	24	21	28	26	1.99
51697490--51697514	13	1.9	13	100	0	50	48	32	0	20	1.50
51699773--51700036	40	6.6	40	89	2	363	25	26	23	23	2.00
51699761--51700036	119	2.3	119	85	5	387	25	27	23	23	2.00
51708611--51708677	34	2.0	34	96	0	125	31	25	13	29	1.94
51711635--51711859	40	5.6	40	83	2	281	23	27	24	24	2.00
51719914--51720098	79	2.3	81	84	7	236	24	22	27	25	2.00
51719915--51720098	40	4.6	40	83	9	216	24	22	27	25	2.00
51719967--51720131	79	2.1	79	84	6	210	26	21	27	25	1.99
51727853--51728037	79	2.3	81	84	7	236	24	22	27	25	2.00
51727854--51728037	40	4.6	40	83	9	216	24	22	27	25	2.00
51727906--51728070	79	2.1	79	84	6	210	26	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51734684--51734708	7	3.6	7	100	0	50	28	28	0	44	1.55
51737263--51737445	79	2.3	81	84	7	232	25	27	22	24	2.00
51737242--51737445	40	5.1	40	82	8	238	25	27	22	24	2.00
51738596--51738774	85	2.1	85	100	0	358	26	27	8	37	1.85
51745249--51745431	40	4.6	40	80	11	198	25	28	21	24	1.99
51745249--51745431	79	2.3	80	80	10	205	25	28	21	24	1.99
51746601--51746778	85	2.1	84	98	1	347	26	27	8	37	1.85
51747618--51747912	144	2.0	149	88	5	451	41	14	17	25	1.88
51748072--51748388	47	6.7	48	79	12	266	25	31	16	26	1.97
51748165--51748388	46	4.7	47	77	13	185	25	32	16	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253